RNA–Protein interactions for RNA: ENST00000562626.1

CLK3-208, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 812 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-208ENST00000562626 STBD1O95210 358 aa11.04□□□□□ -0.64
CLK3-208ENST00000562626 ATP2C1P98194 919 aaPredicted RBP11.04□□□□□ -0.64
CLK3-208ENST00000562626 KRT76Q01546 638 aa11.04□□□□□ -0.64
CLK3-208ENST00000562626 CEBPZQ03701 1054 aaKnown RBP11.04□□□□□ -0.64
CLK3-208ENST00000562626 ITGA7Q13683 1181 aa11.04□□□□□ -0.64
CLK3-208ENST00000562626 NCAPH2Q6IBW4 605 aa11.04□□□□□ -0.64
CLK3-208ENST00000562626 SWSAP1Q6NVH7 229 aa11.04□□□□□ -0.64
CLK3-208ENST00000562626 MIER3Q7Z3K6 550 aa11.04□□□□□ -0.64
CLK3-208ENST00000562626 BANK1Q8NDB2 785 aa11.04□□□□□ -0.64
CLK3-208ENST00000562626 TRAPPC12Q8WVT3 735 aa11.04□□□□□ -0.64
CLK3-208ENST00000562626 WNT8BQ93098 351 aa11.04□□□□□ -0.64
CLK3-208ENST00000562626 FAM20AQ96MK3 541 aa11.04□□□□□ -0.64
CLK3-208ENST00000562626 GLT1D1Q96MS3 346 aa11.04□□□□□ -0.64
CLK3-208ENST00000562626 NAP1L4Q99733 375 aaKnown RBP11.04□□□□□ -0.64
CLK3-208ENST00000562626 TUT1Q9H6E5 874 aaKnown RBP11.04□□□□□ -0.64
CLK3-208ENST00000562626 RGL1Q9NZL6 768 aa11.04□□□□□ -0.64
CLK3-208ENST00000562626 TFIP11Q9UBB9 837 aaKnown RBP11.04□□□□□ -0.64
CLK3-208ENST00000562626 HDAC6Q9UBN7 1215 aa11.04□□□□□ -0.64
CLK3-208ENST00000562626 GABBR1Q9UBS5 961 aa11.04□□□□□ -0.64
CLK3-208ENST00000562626 DAXXQ9UER7 740 aaPredicted RBP11.04□□□□□ -0.64
CLK3-208ENST00000562626 WDR64B1ANS9 1081 aa11.03□□□□□ -0.64
CLK3-208ENST00000562626 ZBTB42B2RXF5 422 aa11.03□□□□□ -0.64
CLK3-208ENST00000562626 ARVCFO00192 962 aa11.03□□□□□ -0.64
CLK3-208ENST00000562626 ZBTB39O15060 712 aa11.03□□□□□ -0.64
CLK3-208ENST00000562626 B4GALT4O60513 344 aa11.03□□□□□ -0.64
CLK3-208ENST00000562626 SMIM10L2AP0DMW4 78 aa11.03□□□□□ -0.64
CLK3-208ENST00000562626 SMIM10L2BP0DMW5 78 aa11.03□□□□□ -0.64
CLK3-208ENST00000562626 ANP32AP39687 249 aaKnown RBP11.03□□□□□ -0.64
CLK3-208ENST00000562626 TECP42680 631 aa11.03□□□□□ -0.64
CLK3-208ENST00000562626 TLE2Q04725 743 aa11.03□□□□□ -0.64
CLK3-208ENST00000562626 PLCB4Q15147 1175 aa11.03□□□□□ -0.64
CLK3-208ENST00000562626 GDF6Q6KF10 455 aaPredicted RBP11.03□□□□□ -0.64
CLK3-208ENST00000562626 SH3RF1Q7Z6J0 888 aa11.03□□□□□ -0.64
CLK3-208ENST00000562626 FAM126BQ8IXS8 530 aa11.03□□□□□ -0.64
CLK3-208ENST00000562626 VTI1AQ96AJ9 217 aa11.03□□□□□ -0.64
CLK3-208ENST00000562626 TRPV6Q9H1D0 765 aa11.03□□□□□ -0.64
CLK3-208ENST00000562626 TRMT13Q9NUP7 481 aaKnown RBP11.03□□□□□ -0.64
CLK3-208ENST00000562626 PCDHA12Q9UN75 941 aa11.03□□□□□ -0.64
CLK3-208ENST00000562626 ATP11BQ9Y2G3 1177 aa11.03□□□□□ -0.64
CLK3-208ENST00000562626 PCDHA10Q9Y5I2 948 aa11.03□□□□□ -0.64
CLK3-208ENST00000562626 MAFBQ9Y5Q3 323 aaPredicted RBP11.03□□□□□ -0.64
CLK3-208ENST00000562626 A0A0U1RQG5 324 aaPredicted RBP11.02□□□□□ -0.65
CLK3-208ENST00000562626 BACH1O14867 736 aa11.02□□□□□ -0.65
CLK3-208ENST00000562626 ZEB2O60315 1214 aa11.02□□□□□ -0.65
CLK3-208ENST00000562626 KPNA6O60684 536 aa11.02□□□□□ -0.65
CLK3-208ENST00000562626 PQBP1O60828 265 aaKnown RBP11.02□□□□□ -0.65
CLK3-208ENST00000562626 MED24O75448 989 aa11.02□□□□□ -0.65
CLK3-208ENST00000562626 CD4P01730 458 aa11.02□□□□□ -0.65
CLK3-208ENST00000562626 ITGB8P26012 769 aa11.02□□□□□ -0.65
CLK3-208ENST00000562626 CDC25AP30304 524 aa11.02□□□□□ -0.65
CLK3-208ENST00000562626 HOXC8P31273 242 aa11.02□□□□□ -0.65
CLK3-208ENST00000562626 STAT5BP51692 787 aa11.02□□□□□ -0.65
CLK3-208ENST00000562626 CYP4A11Q02928 519 aa11.02□□□□□ -0.65
CLK3-208ENST00000562626 DNM1Q05193 864 aaKnown RBP11.02□□□□□ -0.65
CLK3-208ENST00000562626 ORC2Q13416 577 aaPredicted RBP11.02□□□□□ -0.65
CLK3-208ENST00000562626 CTTNQ14247 550 aaKnown RBP11.02□□□□□ -0.65
CLK3-208ENST00000562626 ECM1Q16610 540 aa11.02□□□□□ -0.65
CLK3-208ENST00000562626 BRDTQ58F21 947 aaPredicted RBP11.02□□□□□ -0.65
CLK3-208ENST00000562626 FAM47CQ5HY64 1035 aa11.02□□□□□ -0.65
CLK3-208ENST00000562626 C1orf53Q5VUE5 145 aa11.02□□□□□ -0.65
CLK3-208ENST00000562626 MIS18BP1Q6P0N0 1132 aa11.02□□□□□ -0.65
CLK3-208ENST00000562626 TRMT1LQ7Z2T5 733 aaKnown RBP11.02□□□□□ -0.65
CLK3-208ENST00000562626 SMAP1Q8IYB5 467 aaPredicted RBP11.02□□□□□ -0.65
CLK3-208ENST00000562626 SLFN12Q8IYM2 578 aa11.02□□□□□ -0.65
CLK3-208ENST00000562626 ZNF579Q8NAF0 562 aaKnown RBP11.02□□□□□ -0.65
CLK3-208ENST00000562626 AFAP1L1Q8TED9 768 aa11.02□□□□□ -0.65
CLK3-208ENST00000562626 LRRC15Q8TF66 581 aa11.02□□□□□ -0.65
CLK3-208ENST00000562626 GLG1Q92896 1179 aa11.02□□□□□ -0.65
CLK3-208ENST00000562626 DYDC2Q96IM9 177 aa11.02□□□□□ -0.65
CLK3-208ENST00000562626 SH2D3AQ9BRG2 576 aa11.02□□□□□ -0.65
CLK3-208ENST00000562626 MMTAG2Q9BU76 263 aaKnown RBP11.02□□□□□ -0.65
CLK3-208ENST00000562626 ZSCAN16Q9H4T2 348 aaPredicted RBP11.02□□□□□ -0.65
CLK3-208ENST00000562626 ZNF302Q9NR11 478 aa11.02□□□□□ -0.65
CLK3-208ENST00000562626 SETD4Q9NVD3 440 aa11.02□□□□□ -0.65
CLK3-208ENST00000562626 SAMM50Q9Y512 469 aa11.02□□□□□ -0.65
CLK3-208ENST00000562626 CUL9Q8IWT3 2517 aa11.02□□□□□ -0.65
CLK3-208ENST00000562626 UMODL1Q5DID0 1318 aa11.02□□□□□ -0.65
CLK3-208ENST00000562626 VWA3AA6NCI4 1184 aa11.01□□□□□ -0.65
CLK3-208ENST00000562626 MARCH6O60337 910 aa11.01□□□□□ -0.65
CLK3-208ENST00000562626 CABYRO75952 493 aa11.01□□□□□ -0.65
CLK3-208ENST00000562626 SLITRK3O94933 977 aa11.01□□□□□ -0.65
CLK3-208ENST00000562626 BAG4O95429 457 aaKnown RBP11.01□□□□□ -0.65
CLK3-208ENST00000562626 PSAPP07602 524 aa11.01□□□□□ -0.65
CLK3-208ENST00000562626 SPATA31C1P0DKV0 1188 aa11.01□□□□□ -0.65
CLK3-208ENST00000562626 CAPN2P17655 700 aa11.01□□□□□ -0.65
CLK3-208ENST00000562626 MARCKSP29966 332 aaPredicted RBP11.01□□□□□ -0.65
CLK3-208ENST00000562626 NASPP49321 788 aaPredicted RBP11.01□□□□□ -0.65
CLK3-208ENST00000562626 FXR2P51116 673 aaKnown RBP eCLIP11.01□□□□□ -0.65
CLK3-208ENST00000562626 JAK3P52333 1124 aa11.01□□□□□ -0.65
CLK3-208ENST00000562626 ADAM17P78536 824 aa11.01□□□□□ -0.65
CLK3-208ENST00000562626 PRKCEQ02156 737 aa11.01□□□□□ -0.65
CLK3-208ENST00000562626 FAAP100Q0VG06 881 aa11.01□□□□□ -0.65
CLK3-208ENST00000562626 EPHA7Q15375 998 aa11.01□□□□□ -0.65
CLK3-208ENST00000562626 MARCH8Q5T0T0 291 aa11.01□□□□□ -0.65
CLK3-208ENST00000562626 PDXDC2PQ6P474 469 aa11.01□□□□□ -0.65
CLK3-208ENST00000562626 NFRKBQ6P4R8 1299 aa11.01□□□□□ -0.65
CLK3-208ENST00000562626 USP49Q70CQ1 688 aa11.01□□□□□ -0.65
CLK3-208ENST00000562626 PLPPR4Q7Z2D5 763 aa11.01□□□□□ -0.65
CLK3-208ENST00000562626 ANKRD33Q7Z3H0 272 aa11.01□□□□□ -0.65
CLK3-208ENST00000562626 SESTD1Q86VW0 696 aa11.01□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms