RNA–Protein interactions for RNA: ENST00000561065.1

LMX1B-204, Transcript of LIM homeobox transcription factor 1 beta, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LMX1B, Length 1,300 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1B-204ENST00000561065 ACTR2P61160 394 aa18.21■□□□□ 0.51
LMX1B-204ENST00000561065 CCT2P78371 535 aaKnown RBP18.21■□□□□ 0.51
LMX1B-204ENST00000561065 AKAP17AQ02040 695 aaKnown RBP18.21■□□□□ 0.51
LMX1B-204ENST00000561065 GRIK4Q16099 956 aa18.21■□□□□ 0.51
LMX1B-204ENST00000561065 MARCH8Q5T0T0 291 aa18.21■□□□□ 0.51
LMX1B-204ENST00000561065 PPM1EQ8WY54 764 aa18.21■□□□□ 0.51
LMX1B-204ENST00000561065 UPF3BQ9BZI7 483 aaKnown RBP18.21■□□□□ 0.51
LMX1B-204ENST00000561065 NLRC5Q86WI3 1866 aa18.2■□□□□ 0.5
LMX1B-204ENST00000561065 MBLAC1A4D2B0 266 aaPredicted RBP18.2■□□□□ 0.5
LMX1B-204ENST00000561065 CCNE2O96020 404 aa18.2■□□□□ 0.5
LMX1B-204ENST00000561065 GNAT1P11488 350 aa18.2■□□□□ 0.5
LMX1B-204ENST00000561065 IFNAR1P17181 557 aa18.2■□□□□ 0.5
LMX1B-204ENST00000561065 MGAT3Q09327 533 aa18.2■□□□□ 0.5
LMX1B-204ENST00000561065 IKBKEQ14164 716 aa18.2■□□□□ 0.5
LMX1B-204ENST00000561065 FAM26DQ5JW98 314 aa18.2■□□□□ 0.5
LMX1B-204ENST00000561065 KRT40Q6A162 431 aa18.2■□□□□ 0.5
LMX1B-204ENST00000561065 GLG1Q92896 1179 aa18.2■□□□□ 0.5
LMX1B-204ENST00000561065 UIMC1Q96RL1 719 aa18.2■□□□□ 0.5
LMX1B-204ENST00000561065 LARP6Q9BRS8 491 aaKnown RBP18.2■□□□□ 0.5
LMX1B-204ENST00000561065 SLC26A6Q9BXS9 759 aa18.2■□□□□ 0.5
LMX1B-204ENST00000561065 RNF26Q9BY78 433 aaPredicted RBP18.2■□□□□ 0.5
LMX1B-204ENST00000561065 VPS54Q9P1Q0 977 aa18.2■□□□□ 0.5
LMX1B-204ENST00000561065 TUBE1Q9UJT0 475 aa18.2■□□□□ 0.5
LMX1B-204ENST00000561065 COL4A6Q14031 1691 aa18.19■□□□□ 0.5
LMX1B-204ENST00000561065 EDIL3O43854 480 aa18.19■□□□□ 0.5
LMX1B-204ENST00000561065 CHRNA1P02708 482 aa18.19■□□□□ 0.5
LMX1B-204ENST00000561065 ANAPC15P60006 121 aa18.19■□□□□ 0.5
LMX1B-204ENST00000561065 CCDC85BQ15834 202 aaPredicted RBP18.19■□□□□ 0.5
LMX1B-204ENST00000561065 FAM117BQ6P1L5 589 aa18.19■□□□□ 0.5
LMX1B-204ENST00000561065 NIPA1Q7RTP0 329 aa18.19■□□□□ 0.5
LMX1B-204ENST00000561065 REXO1Q8N1G1 1221 aaKnown RBP18.19■□□□□ 0.5
LMX1B-204ENST00000561065 ARNTL2Q8WYA1 636 aa18.19■□□□□ 0.5
LMX1B-204ENST00000561065 SDF4Q9BRK5 362 aa18.19■□□□□ 0.5
LMX1B-204ENST00000561065 SMARCAD1Q9H4L7 1026 aa18.19■□□□□ 0.5
LMX1B-204ENST00000561065 KIF28PB7ZC32 967 aa18.18■□□□□ 0.5
LMX1B-204ENST00000561065 DDX39AO00148 427 aaKnown RBP18.18■□□□□ 0.5
LMX1B-204ENST00000561065 DHX15O43143 795 aaKnown RBP18.18■□□□□ 0.5
LMX1B-204ENST00000561065 LPXNO60711 386 aa18.18■□□□□ 0.5
LMX1B-204ENST00000561065 EFCAB14O75071 495 aa18.18■□□□□ 0.5
LMX1B-204ENST00000561065 CYP3A4P08684 503 aa18.18■□□□□ 0.5
LMX1B-204ENST00000561065 PLCB4Q15147 1175 aa18.18■□□□□ 0.5
LMX1B-204ENST00000561065 CPLX2Q6PUV4 134 aaKnown RBP18.18■□□□□ 0.5
LMX1B-204ENST00000561065 RPAINQ86UA6 219 aa18.18■□□□□ 0.5
LMX1B-204ENST00000561065 PLA2G4DQ86XP0 818 aa18.18■□□□□ 0.5
LMX1B-204ENST00000561065 CCDC12Q8WUD4 166 aaPredicted RBP18.18■□□□□ 0.5
LMX1B-204ENST00000561065 TRAPPC12Q8WVT3 735 aa18.18■□□□□ 0.5
LMX1B-204ENST00000561065 ATG2AQ2TAZ0 1938 aa18.18■□□□□ 0.5
LMX1B-204ENST00000561065 MYH9P35579 1960 aaKnown RBP18.18■□□□□ 0.5
LMX1B-204ENST00000561065 TTC28Q96AY4 2481 aa18.17■□□□□ 0.5
LMX1B-204ENST00000561065 IGKV6D-21A0A0A0MT36 114 aa18.17■□□□□ 0.5
LMX1B-204ENST00000561065 LOC101059915A0A1B0GWI6 518 aaPredicted RBP18.17■□□□□ 0.5
LMX1B-204ENST00000561065 ATG7O95352 703 aa18.17■□□□□ 0.5
LMX1B-204ENST00000561065 INSRRP14616 1297 aa18.17■□□□□ 0.5
LMX1B-204ENST00000561065 IGBP1P78318 339 aa18.17■□□□□ 0.5
LMX1B-204ENST00000561065 MCTP2Q6DN12 878 aa18.17■□□□□ 0.5
LMX1B-204ENST00000561065 TAF2Q6P1X5 1199 aa18.17■□□□□ 0.5
LMX1B-204ENST00000561065 CCDC60Q8IWA6 550 aaPredicted RBP18.17■□□□□ 0.5
LMX1B-204ENST00000561065 MYOCDQ8IZQ8 938 aa18.17■□□□□ 0.5
LMX1B-204ENST00000561065 LENG9Q96B70 501 aa18.17■□□□□ 0.5
LMX1B-204ENST00000561065 C6orf50Q9HD87 102 aa18.17■□□□□ 0.5
LMX1B-204ENST00000561065 MTCH2Q9Y6C9 303 aa18.17■□□□□ 0.5
LMX1B-204ENST00000561065 LINC01553A4QN01 128 aa18.16■□□□□ 0.5
LMX1B-204ENST00000561065 GHRP10912 638 aa18.16■□□□□ 0.5
LMX1B-204ENST00000561065 ZNF76P36508 570 aa18.16■□□□□ 0.5
LMX1B-204ENST00000561065 GRB10Q13322 594 aa18.16■□□□□ 0.5
LMX1B-204ENST00000561065 ANKRD1Q15327 319 aa18.16■□□□□ 0.5
LMX1B-204ENST00000561065 RALGAPA2Q2PPJ7 1873 aa18.16■□□□□ 0.5
LMX1B-204ENST00000561065 MICALL1Q8N3F8 863 aa18.16■□□□□ 0.5
LMX1B-204ENST00000561065 GDPD5Q8WTR4 605 aa18.16■□□□□ 0.5
LMX1B-204ENST00000561065 DNAJB3Q8WWF6 145 aa18.16■□□□□ 0.5
LMX1B-204ENST00000561065 SEPT8Q92599 483 aa18.16■□□□□ 0.5
LMX1B-204ENST00000561065 EVPLQ92817 2033 aa18.16■□□□□ 0.5
LMX1B-204ENST00000561065 RAD9AQ99638 391 aa18.16■□□□□ 0.5
LMX1B-204ENST00000561065 ZBED2Q9BTP6 218 aa18.16■□□□□ 0.5
LMX1B-204ENST00000561065 IFIH1Q9BYX4 1025 aaKnown RBP18.16■□□□□ 0.5
LMX1B-204ENST00000561065 POU3F3P20264 500 aaPredicted RBP18.15■□□□□ 0.5
LMX1B-204ENST00000561065 HTRA4P83105 476 aaPredicted RBP18.15■□□□□ 0.5
LMX1B-204ENST00000561065 LPIN1Q14693 890 aa18.15■□□□□ 0.5
LMX1B-204ENST00000561065 ABHD15Q6UXT9 468 aa18.15■□□□□ 0.5
LMX1B-204ENST00000561065 PLPPR4Q7Z2D5 763 aa18.15■□□□□ 0.5
LMX1B-204ENST00000561065 CCDC148Q8NFR7 591 aa18.15■□□□□ 0.5
LMX1B-204ENST00000561065 AIFM3Q96NN9 605 aa18.15■□□□□ 0.5
LMX1B-204ENST00000561065 AZI2Q9H6S1 392 aa18.15■□□□□ 0.5
LMX1B-204ENST00000561065 PDRG1Q9NUG6 133 aa18.15■□□□□ 0.5
LMX1B-204ENST00000561065 TRPC6Q9Y210 931 aa18.15■□□□□ 0.5
LMX1B-204ENST00000561065 CDY2AQ9Y6F7 541 aa18.15■□□□□ 0.5
LMX1B-204ENST00000561065 KIAA1671Q9BY89 1806 aa18.14■□□□□ 0.5
LMX1B-204ENST00000561065 IPO5O00410 1097 aaKnown RBP18.14■□□□□ 0.49
LMX1B-204ENST00000561065 CPLX1O14810 134 aa18.14■□□□□ 0.49
LMX1B-204ENST00000561065 AMHP03971 560 aa18.14■□□□□ 0.49
LMX1B-204ENST00000561065 GNA11P29992 359 aa18.14■□□□□ 0.49
LMX1B-204ENST00000561065 CIITAP33076 1130 aa18.14■□□□□ 0.49
LMX1B-204ENST00000561065 STAT5BP51692 787 aa18.14■□□□□ 0.49
LMX1B-204ENST00000561065 STK3Q13188 491 aa18.14■□□□□ 0.49
LMX1B-204ENST00000561065 NPY5RQ15761 445 aa18.14■□□□□ 0.49
LMX1B-204ENST00000561065 FBXO47Q5MNV8 452 aa18.14■□□□□ 0.49
LMX1B-204ENST00000561065 TRIM22Q8IYM9 498 aa18.14■□□□□ 0.49
LMX1B-204ENST00000561065 SP7Q8TDD2 431 aaPredicted RBP18.14■□□□□ 0.49
LMX1B-204ENST00000561065 ZNF274Q96GC6 653 aaPredicted RBP18.14■□□□□ 0.49
LMX1B-204ENST00000561065 FAM49AQ9H0Q0 323 aaPredicted RBP18.14■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 10.4 ms