RNA–Protein interactions for RNA: ENST00000559989.1

CSPG4P12-202, Transcript of chondroitin sulfate proteoglycan 4 pseudogene 12, humanhuman

TSL 1 (best) BASIC

Gene CSPG4P12, Length 7,790 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4P12-202ENST00000559989 FTOQ9C0B1 505 aaKnown RBP eCLIP14.84□□□□□ -0.03
CSPG4P12-202ENST00000559989 SYBUQ9NX95 663 aa14.84□□□□□ -0.03
CSPG4P12-202ENST00000559989 WASLO00401 505 aaPredicted RBP14.84□□□□□ -0.03
CSPG4P12-202ENST00000559989 RNF219Q5W0B1 726 aaPredicted RBP14.84□□□□□ -0.03
CSPG4P12-202ENST00000559989 CAPRIN2Q6IMN6 1127 aaKnown RBP14.84□□□□□ -0.03
CSPG4P12-202ENST00000559989 ARHGEF25Q86VW2 580 aa14.84□□□□□ -0.03
CSPG4P12-202ENST00000559989 FAF2Q96CS3 445 aa14.84□□□□□ -0.03
CSPG4P12-202ENST00000559989 COQ7Q99807 217 aa14.84□□□□□ -0.03
CSPG4P12-202ENST00000559989 LRRC4Q9HBW1 653 aa14.84□□□□□ -0.03
CSPG4P12-202ENST00000559989 NCOA5Q9HCD5 579 aaKnown RBP14.84□□□□□ -0.03
CSPG4P12-202ENST00000559989 GGA1Q9UJY5 639 aa14.84□□□□□ -0.03
CSPG4P12-202ENST00000559989 ZNF215Q9UL58 517 aaPredicted RBP14.84□□□□□ -0.03
CSPG4P12-202ENST00000559989 ZNF500O60304 480 aaPredicted RBP14.83□□□□□ -0.03
CSPG4P12-202ENST00000559989 ZBED1O96006 694 aa14.83□□□□□ -0.03
CSPG4P12-202ENST00000559989 AHI1Q8N157 1196 aa14.83□□□□□ -0.03
CSPG4P12-202ENST00000559989 DIS3Q9Y2L1 958 aaKnown RBP14.83□□□□□ -0.03
CSPG4P12-202ENST00000559989 FAM83GA6ND36 823 aa14.83□□□□□ -0.03
CSPG4P12-202ENST00000559989 POLR2MP0CAP2 368 aa14.83□□□□□ -0.03
CSPG4P12-202ENST00000559989 TTLL7Q6ZT98 887 aa14.83□□□□□ -0.03
CSPG4P12-202ENST00000559989 CALR3Q96L12 384 aaKnown RBP14.83□□□□□ -0.03
CSPG4P12-202ENST00000559989 SIKE1Q9BRV8 207 aa14.83□□□□□ -0.03
CSPG4P12-202ENST00000559989 OSBPL1AQ9BXW6 950 aa14.83□□□□□ -0.03
CSPG4P12-202ENST00000559989 INPP5FQ9Y2H2 1132 aa14.83□□□□□ -0.03
CSPG4P12-202ENST00000559989 CFAP73A6NFT4 308 aa14.83□□□□□ -0.04
CSPG4P12-202ENST00000559989 PRPF4O43172 522 aaKnown RBP eCLIP14.83□□□□□ -0.04
CSPG4P12-202ENST00000559989 GPAA1O43292 621 aa14.83□□□□□ -0.04
CSPG4P12-202ENST00000559989 ANXA1P04083 346 aa14.83□□□□□ -0.04
CSPG4P12-202ENST00000559989 KITP10721 976 aa14.83□□□□□ -0.04
CSPG4P12-202ENST00000559989 INPP5AQ14642 412 aa14.83□□□□□ -0.04
CSPG4P12-202ENST00000559989 RAB42Q8N4Z0 105 aa14.83□□□□□ -0.04
CSPG4P12-202ENST00000559989 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP14.83□□□□□ -0.04
CSPG4P12-202ENST00000559989 CNOT6LQ96LI5 555 aaKnown RBP14.83□□□□□ -0.04
CSPG4P12-202ENST00000559989 ELAC2Q9BQ52 826 aaKnown RBP14.83□□□□□ -0.04
CSPG4P12-202ENST00000559989 GID8Q9NWU2 228 aa14.83□□□□□ -0.04
CSPG4P12-202ENST00000559989 BLOC1S6Q9UL45 172 aa14.83□□□□□ -0.04
CSPG4P12-202ENST00000559989 SOX13Q9UN79 622 aa14.83□□□□□ -0.04
CSPG4P12-202ENST00000559989 GTPBP6O43824 516 aaPredicted RBP14.83□□□□□ -0.04
CSPG4P12-202ENST00000559989 CAPZA2P47755 286 aa14.83□□□□□ -0.04
CSPG4P12-202ENST00000559989 RETREG2Q8NC44 543 aa14.83□□□□□ -0.04
CSPG4P12-202ENST00000559989 TTC17Q96AE7 1141 aa14.83□□□□□ -0.04
CSPG4P12-202ENST00000559989 CUEDC2Q9H467 287 aa14.83□□□□□ -0.04
CSPG4P12-202ENST00000559989 HPCAL4Q9UM19 191 aa14.83□□□□□ -0.04
CSPG4P12-202ENST00000559989 MYO1EQ12965 1108 aa14.83□□□□□ -0.04
CSPG4P12-202ENST00000559989 TP53BP2Q13625 1128 aa14.83□□□□□ -0.04
CSPG4P12-202ENST00000559989 PLEKHM2Q8IWE5 1019 aa14.83□□□□□ -0.04
CSPG4P12-202ENST00000559989 PDIK1LQ8N165 341 aa14.83□□□□□ -0.04
CSPG4P12-202ENST00000559989 SLC35F6Q8N357 371 aa14.83□□□□□ -0.04
CSPG4P12-202ENST00000559989 AGBL1Q96MI9 1066 aa14.83□□□□□ -0.04
CSPG4P12-202ENST00000559989 FSD1LQ9BXM9 530 aa14.83□□□□□ -0.04
CSPG4P12-202ENST00000559989 VPS54Q9P1Q0 977 aa14.83□□□□□ -0.04
CSPG4P12-202ENST00000559989 H0Y3Z8 333 aa14.83□□□□□ -0.04
CSPG4P12-202ENST00000559989 PODXLO00592 558 aa14.83□□□□□ -0.04
CSPG4P12-202ENST00000559989 KRT16P08779 473 aa14.83□□□□□ -0.04
CSPG4P12-202ENST00000559989 KIAA1755Q5JYT7 1200 aa14.83□□□□□ -0.04
CSPG4P12-202ENST00000559989 SUPT20HQ8NEM7 779 aa14.83□□□□□ -0.04
CSPG4P12-202ENST00000559989 LARP4BQ92615 738 aaKnown RBP14.83□□□□□ -0.04
CSPG4P12-202ENST00000559989 BTBD6Q96KE9 485 aa14.83□□□□□ -0.04
CSPG4P12-202ENST00000559989 CNGB3Q9NQW8 809 aa14.83□□□□□ -0.04
CSPG4P12-202ENST00000559989 E5RI56 91 aa14.82□□□□□ -0.04
CSPG4P12-202ENST00000559989 MTRF1O75570 445 aaKnown RBP14.82□□□□□ -0.04
CSPG4P12-202ENST00000559989 PCDHGB4Q9UN71 923 aa14.82□□□□□ -0.04
CSPG4P12-202ENST00000559989 ZNF18P17022 549 aa14.82□□□□□ -0.04
CSPG4P12-202ENST00000559989 CYTH1Q15438 398 aa14.82□□□□□ -0.04
CSPG4P12-202ENST00000559989 CCDC127Q96BQ5 260 aa14.82□□□□□ -0.04
CSPG4P12-202ENST00000559989 ECT2Q9H8V3 914 aa14.82□□□□□ -0.04
CSPG4P12-202ENST00000559989 PSTPIP2Q9H939 334 aa14.82□□□□□ -0.04
CSPG4P12-202ENST00000559989 GINM1Q9NU53 330 aa14.82□□□□□ -0.04
CSPG4P12-202ENST00000559989 TMEM161AQ9NX61 479 aa14.82□□□□□ -0.04
CSPG4P12-202ENST00000559989 USE1Q9NZ43 259 aa14.82□□□□□ -0.04
CSPG4P12-202ENST00000559989 CTIFO43310 598 aaKnown RBP14.82□□□□□ -0.04
CSPG4P12-202ENST00000559989 C8orf34Q49A92 452 aa14.82□□□□□ -0.04
CSPG4P12-202ENST00000559989 WDR3Q9UNX4 943 aaKnown RBP eCLIP14.82□□□□□ -0.04
CSPG4P12-202ENST00000559989 PABPC4Q13310 644 aaKnown RBP eCLIP14.82□□□□□ -0.04
CSPG4P12-202ENST00000559989 KRT40Q6A162 431 aa14.82□□□□□ -0.04
CSPG4P12-202ENST00000559989 KRT77Q7Z794 578 aa14.82□□□□□ -0.04
CSPG4P12-202ENST00000559989 RTL3Q8N8U3 475 aaKnown RBP14.82□□□□□ -0.04
CSPG4P12-202ENST00000559989 DCTPP1Q9H773 170 aa14.82□□□□□ -0.04
CSPG4P12-202ENST00000559989 LCMT1Q9UIC8 334 aa14.82□□□□□ -0.04
CSPG4P12-202ENST00000559989 GOLGA8IPA6NC78 632 aa14.82□□□□□ -0.04
CSPG4P12-202ENST00000559989 GRK2P25098 689 aa14.82□□□□□ -0.04
CSPG4P12-202ENST00000559989 PDE6BP35913 854 aa14.82□□□□□ -0.04
CSPG4P12-202ENST00000559989 ICE2Q659A1 982 aa14.82□□□□□ -0.04
CSPG4P12-202ENST00000559989 SREK1IP1Q8N9Q2 155 aaPredicted RBP14.82□□□□□ -0.04
CSPG4P12-202ENST00000559989 LINS1Q8NG48 757 aa14.82□□□□□ -0.04
CSPG4P12-202ENST00000559989 TUBGCP2Q9BSJ2 902 aa14.82□□□□□ -0.04
CSPG4P12-202ENST00000559989 KRT17Q04695 432 aa14.82□□□□□ -0.04
CSPG4P12-202ENST00000559989 CNGA2Q16280 664 aa14.82□□□□□ -0.04
CSPG4P12-202ENST00000559989 CCDC103Q8IW40 242 aa14.82□□□□□ -0.04
CSPG4P12-202ENST00000559989 STAMQ92783 540 aa14.82□□□□□ -0.04
CSPG4P12-202ENST00000559989 FAM149B1Q96BN6 582 aa14.82□□□□□ -0.04
CSPG4P12-202ENST00000559989 KCNJ14Q9UNX9 436 aa14.82□□□□□ -0.04
CSPG4P12-202ENST00000559989 KIF14Q15058 1648 aa14.82□□□□□ -0.04
CSPG4P12-202ENST00000559989 PIK3R2O00459 728 aa14.81□□□□□ -0.04
CSPG4P12-202ENST00000559989 TEX28O15482 410 aa14.81□□□□□ -0.04
CSPG4P12-202ENST00000559989 OR52Z1P0C646 297 aa14.81□□□□□ -0.04
CSPG4P12-202ENST00000559989 LAMC2Q13753 1193 aa14.81□□□□□ -0.04
CSPG4P12-202ENST00000559989 CENPPQ6IPU0 288 aa14.81□□□□□ -0.04
CSPG4P12-202ENST00000559989 CASS4Q9NQ75 786 aa14.81□□□□□ -0.04
CSPG4P12-202ENST00000559989 AKT3Q9Y243 479 aa14.81□□□□□ -0.04
CSPG4P12-202ENST00000559989 RALBP11234 206 aa14.81□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms