RNA–Protein interactions for RNA: ENST00000559340.1

LDLR-210, Transcript of low density lipoprotein receptor, humanhuman

TSL 5

Gene LDLR, Length 605 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-210ENST00000559340 VTI1AQ96AJ9 217 aa10.37□□□□□ -0.75
LDLR-210ENST00000559340 UIMC1Q96RL1 719 aa10.37□□□□□ -0.75
LDLR-210ENST00000559340 MTG1Q9BT17 334 aaPredicted RBP10.37□□□□□ -0.75
LDLR-210ENST00000559340 TUFT1Q9NNX1 390 aa10.37□□□□□ -0.75
LDLR-210ENST00000559340 ZNF302Q9NR11 478 aa10.37□□□□□ -0.75
LDLR-210ENST00000559340 NRBP2Q9NSY0 501 aa10.37□□□□□ -0.75
LDLR-210ENST00000559340 VAV3Q9UKW4 847 aa10.37□□□□□ -0.75
LDLR-210ENST00000559340 MYH11P35749 1972 aa10.37□□□□□ -0.75
LDLR-210ENST00000559340 ADCY6O43306 1168 aa10.36□□□□□ -0.75
LDLR-210ENST00000559340 SORBS3O60504 671 aa10.36□□□□□ -0.75
LDLR-210ENST00000559340 LGR5O75473 907 aa10.36□□□□□ -0.75
LDLR-210ENST00000559340 QARSP47897 775 aaKnown RBP10.36□□□□□ -0.75
LDLR-210ENST00000559340 PSMC5P62195 406 aa10.36□□□□□ -0.75
LDLR-210ENST00000559340 KCNA10Q16322 511 aa10.36□□□□□ -0.75
LDLR-210ENST00000559340 SWSAP1Q6NVH7 229 aa10.36□□□□□ -0.75
LDLR-210ENST00000559340 PDXDC2PQ6P474 469 aa10.36□□□□□ -0.75
LDLR-210ENST00000559340 B3GNT9Q6UX72 402 aa10.36□□□□□ -0.75
LDLR-210ENST00000559340 OTUD6AQ7L8S5 288 aa10.36□□□□□ -0.75
LDLR-210ENST00000559340 IGSF22Q8N9C0 903 aa10.36□□□□□ -0.75
LDLR-210ENST00000559340 AFAP1L1Q8TED9 768 aa10.36□□□□□ -0.75
LDLR-210ENST00000559340 LEO1Q8WVC0 666 aaPredicted RBP10.36□□□□□ -0.75
LDLR-210ENST00000559340 CALML4Q96GE6 196 aa10.36□□□□□ -0.75
LDLR-210ENST00000559340 CDK5RAP3Q96JB5 506 aa10.36□□□□□ -0.75
LDLR-210ENST00000559340 FAM167AQ96KS9 214 aa10.36□□□□□ -0.75
LDLR-210ENST00000559340 GLT1D1Q96MS3 346 aa10.36□□□□□ -0.75
LDLR-210ENST00000559340 PYM1Q9BRP8 204 aaKnown RBP10.36□□□□□ -0.75
LDLR-210ENST00000559340 POLR3CQ9BUI4 534 aaPredicted RBP10.36□□□□□ -0.75
LDLR-210ENST00000559340 NT5C3AQ9H0P0 336 aa10.36□□□□□ -0.75
LDLR-210ENST00000559340 ZSWIM4Q9H7M6 989 aa10.36□□□□□ -0.75
LDLR-210ENST00000559340 FAM13BQ9NYF5 915 aa10.36□□□□□ -0.75
LDLR-210ENST00000559340 ERAP1Q9NZ08 941 aa10.36□□□□□ -0.75
LDLR-210ENST00000559340 CCDC39Q9UFE4 941 aa10.36□□□□□ -0.75
LDLR-210ENST00000559340 EMSYQ7Z589 1322 aa10.35□□□□□ -0.75
LDLR-210ENST00000559340 KDM3AQ9Y4C1 1321 aa10.35□□□□□ -0.75
LDLR-210ENST00000559340 IGKV6D-21A0A0A0MT36 114 aa10.35□□□□□ -0.75
LDLR-210ENST00000559340 H3BRB1 525 aa10.35□□□□□ -0.75
LDLR-210ENST00000559340 CCNE2O96020 404 aa10.35□□□□□ -0.75
LDLR-210ENST00000559340 LGALS2P05162 132 aa10.35□□□□□ -0.75
LDLR-210ENST00000559340 ASGR1P07306 291 aa10.35□□□□□ -0.75
LDLR-210ENST00000559340 GNAT1P11488 350 aa10.35□□□□□ -0.75
LDLR-210ENST00000559340 XRCC6P12956 609 aaKnown RBP eCLIP10.35□□□□□ -0.75
LDLR-210ENST00000559340 EN2P19622 333 aaPredicted RBP10.35□□□□□ -0.75
LDLR-210ENST00000559340 RPA1P27694 616 aa10.35□□□□□ -0.75
LDLR-210ENST00000559340 CCT6AP40227 531 aaKnown RBP10.35□□□□□ -0.75
LDLR-210ENST00000559340 BEX3Q00994 111 aa10.35□□□□□ -0.75
LDLR-210ENST00000559340 TMEM63BQ5T3F8 832 aa10.35□□□□□ -0.75
LDLR-210ENST00000559340 ADALQ6DHV7 355 aa10.35□□□□□ -0.75
LDLR-210ENST00000559340 CKAP2LQ8IYA6 745 aa10.35□□□□□ -0.75
LDLR-210ENST00000559340 EXOC8Q8IYI6 725 aa10.35□□□□□ -0.75
LDLR-210ENST00000559340 RASSF8Q8NHQ8 419 aa10.35□□□□□ -0.75
LDLR-210ENST00000559340 GJA10Q969M2 543 aa10.35□□□□□ -0.75
LDLR-210ENST00000559340 LENG1Q96BZ8 264 aaPredicted RBP10.35□□□□□ -0.75
LDLR-210ENST00000559340 NACC1Q96RE7 527 aa10.35□□□□□ -0.75
LDLR-210ENST00000559340 EIF2AK1Q9BQI3 630 aaKnown RBP10.35□□□□□ -0.75
LDLR-210ENST00000559340 FTOQ9C0B1 505 aaKnown RBP eCLIP10.35□□□□□ -0.75
LDLR-210ENST00000559340 CCSER1Q9C0I3 900 aa10.35□□□□□ -0.75
LDLR-210ENST00000559340 TUT1Q9H6E5 874 aaKnown RBP10.35□□□□□ -0.75
LDLR-210ENST00000559340 BCAS3Q9H6U6 928 aa10.35□□□□□ -0.75
LDLR-210ENST00000559340 GABBR1Q9UBS5 961 aa10.35□□□□□ -0.75
LDLR-210ENST00000559340 FBXO2Q9UK22 296 aaPredicted RBP10.35□□□□□ -0.75
LDLR-210ENST00000559340 PHF24Q9UPV7 400 aa10.35□□□□□ -0.75
LDLR-210ENST00000559340 MAFBQ9Y5Q3 323 aaPredicted RBP10.35□□□□□ -0.75
LDLR-210ENST00000559340 POTEMA6NI47 508 aa10.34□□□□□ -0.75
LDLR-210ENST00000559340 EML1O00423 815 aa10.34□□□□□ -0.75
LDLR-210ENST00000559340 CTAGE5O15320 804 aa10.34□□□□□ -0.75
LDLR-210ENST00000559340 HBP1O60381 514 aa10.34□□□□□ -0.75
LDLR-210ENST00000559340 PSEN2P49810 448 aa10.34□□□□□ -0.75
LDLR-210ENST00000559340 ACLYP53396 1101 aa10.34□□□□□ -0.75
LDLR-210ENST00000559340 PURAQ00577 322 aaKnown RBP10.34□□□□□ -0.75
LDLR-210ENST00000559340 PTPN11Q06124 597 aaPredicted RBP10.34□□□□□ -0.75
LDLR-210ENST00000559340 SPIRE1Q08AE8 756 aa10.34□□□□□ -0.75
LDLR-210ENST00000559340 XKR3Q5GH77 459 aa10.34□□□□□ -0.75
LDLR-210ENST00000559340 CLEC17AQ6ZS10 378 aa10.34□□□□□ -0.75
LDLR-210ENST00000559340 NECAB2Q7Z6G3 386 aa10.34□□□□□ -0.75
LDLR-210ENST00000559340 CABP7Q86V35 215 aa10.34□□□□□ -0.75
LDLR-210ENST00000559340 TPH2Q8IWU9 490 aa10.34□□□□□ -0.75
LDLR-210ENST00000559340 C4orf19Q8IY42 314 aa10.34□□□□□ -0.75
LDLR-210ENST00000559340 SNX29Q8TEQ0 813 aa10.34□□□□□ -0.75
LDLR-210ENST00000559340 BBXQ8WY36 941 aaPredicted RBP10.34□□□□□ -0.75
LDLR-210ENST00000559340 CCDC34Q96HJ3 373 aa10.34□□□□□ -0.75
LDLR-210ENST00000559340 CCDC43Q96MW1 224 aaKnown RBP10.34□□□□□ -0.75
LDLR-210ENST00000559340 CSRNP2Q9H175 543 aa10.34□□□□□ -0.75
LDLR-210ENST00000559340 STARD7Q9NQZ5 370 aa10.34□□□□□ -0.75
LDLR-210ENST00000559340 PCDHA7Q9UN72 937 aa10.34□□□□□ -0.75
LDLR-210ENST00000559340 PPME1Q9Y570 386 aa10.34□□□□□ -0.75
LDLR-210ENST00000559340 A0A0U1RQG5 324 aaPredicted RBP10.33□□□□□ -0.76
LDLR-210ENST00000559340 A0A1W2PQ27 194 aa10.33□□□□□ -0.76
LDLR-210ENST00000559340 A0A1W2PQ64 194 aa10.33□□□□□ -0.76
LDLR-210ENST00000559340 A0A1W2PQD8 194 aa10.33□□□□□ -0.76
LDLR-210ENST00000559340 RRN3P2A6NIE6 340 aa10.33□□□□□ -0.76
LDLR-210ENST00000559340 SLITRK3O94933 977 aa10.33□□□□□ -0.76
LDLR-210ENST00000559340 LYPLA2O95372 231 aa10.33□□□□□ -0.76
LDLR-210ENST00000559340 F2P00734 622 aa10.33□□□□□ -0.76
LDLR-210ENST00000559340 CMA1P23946 247 aa10.33□□□□□ -0.76
LDLR-210ENST00000559340 MFSD10Q14728 455 aa10.33□□□□□ -0.76
LDLR-210ENST00000559340 IL17AQ16552 155 aa10.33□□□□□ -0.76
LDLR-210ENST00000559340 KIAA0753Q2KHM9 967 aa10.33□□□□□ -0.76
LDLR-210ENST00000559340 ZNF484Q5JVG2 852 aa10.33□□□□□ -0.76
LDLR-210ENST00000559340 CCSAPQ6IQ19 270 aaPredicted RBP10.33□□□□□ -0.76
LDLR-210ENST00000559340 CXCL17Q6UXB2 119 aa10.33□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms