RNA–Protein interactions for RNA: ENST00000559257.5

USP3-211, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 2,217 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-211ENST00000559257 GAKO14976 1311 aa9.16□□□□□ -0.94
USP3-211ENST00000559257 ZNF233A6NK53 670 aa9.16□□□□□ -0.94
USP3-211ENST00000559257 VAMP4O75379 141 aa9.16□□□□□ -0.94
USP3-211ENST00000559257 SERPINC1P01008 464 aa9.16□□□□□ -0.94
USP3-211ENST00000559257 CYP1A1P04798 512 aaPredicted RBP9.16□□□□□ -0.94
USP3-211ENST00000559257 ZFYP08048 801 aaPredicted RBP9.16□□□□□ -0.94
USP3-211ENST00000559257 RARAP10276 462 aa9.16□□□□□ -0.94
USP3-211ENST00000559257 CETN2P41208 172 aa9.16□□□□□ -0.94
USP3-211ENST00000559257 TNNI2P48788 182 aa9.16□□□□□ -0.94
USP3-211ENST00000559257 CDK7P50613 346 aa9.16□□□□□ -0.94
USP3-211ENST00000559257 THOP1P52888 689 aa9.16□□□□□ -0.94
USP3-211ENST00000559257 ARFIP2P53365 341 aa9.16□□□□□ -0.94
USP3-211ENST00000559257 IKQ13123 557 aaPredicted RBP9.16□□□□□ -0.94
USP3-211ENST00000559257 TTLL12Q14166 644 aaPredicted RBP9.16□□□□□ -0.94
USP3-211ENST00000559257 TTC23LQ6PF05 361 aa9.16□□□□□ -0.94
USP3-211ENST00000559257 LRIG3Q6UXM1 1119 aa9.16□□□□□ -0.94
USP3-211ENST00000559257 PIGWQ7Z7B1 504 aa9.16□□□□□ -0.94
USP3-211ENST00000559257 PATL1Q86TB9 770 aaKnown RBP9.16□□□□□ -0.94
USP3-211ENST00000559257 ZBED8Q8IZ13 594 aa9.16□□□□□ -0.94
USP3-211ENST00000559257 CYP4X1Q8N118 509 aa9.16□□□□□ -0.94
USP3-211ENST00000559257 FAM133AQ8N9E0 248 aa9.16□□□□□ -0.94
USP3-211ENST00000559257 DESI2Q9BSY9 194 aa9.16□□□□□ -0.94
USP3-211ENST00000559257 TSKSQ9UJT2 592 aa9.16□□□□□ -0.94
USP3-211ENST00000559257 USH1CQ9Y6N9 552 aa9.16□□□□□ -0.94
USP3-211ENST00000559257 ATP7AQ04656 1500 aa9.16□□□□□ -0.94
USP3-211ENST00000559257 SIGLEC16A6NMB1 481 aa9.16□□□□□ -0.94
USP3-211ENST00000559257 NOTOA8MTQ0 251 aa9.16□□□□□ -0.94
USP3-211ENST00000559257 ERVV-2B6SEH9 535 aa9.16□□□□□ -0.94
USP3-211ENST00000559257 RASA4BC9J798 803 aa9.16□□□□□ -0.94
USP3-211ENST00000559257 F8W031 263 aaPredicted RBP9.16□□□□□ -0.94
USP3-211ENST00000559257 PSMD14O00487 310 aa9.16□□□□□ -0.94
USP3-211ENST00000559257 NVLO15381 856 aaKnown RBP9.16□□□□□ -0.94
USP3-211ENST00000559257 RASA4O43374 803 aa9.16□□□□□ -0.94
USP3-211ENST00000559257 KRT16P08779 473 aa9.16□□□□□ -0.94
USP3-211ENST00000559257 ATP5DP30049 168 aa9.16□□□□□ -0.94
USP3-211ENST00000559257 HMOX2P30519 316 aa9.16□□□□□ -0.94
USP3-211ENST00000559257 TXKP42681 527 aa9.16□□□□□ -0.94
USP3-211ENST00000559257 EXOSC9Q06265 439 aaKnown RBP9.16□□□□□ -0.94
USP3-211ENST00000559257 PRKG1Q13976 671 aa9.16□□□□□ -0.94
USP3-211ENST00000559257 PLS1Q14651 629 aa9.16□□□□□ -0.94
USP3-211ENST00000559257 NONOQ15233 471 aaKnown RBP eCLIP9.16□□□□□ -0.94
USP3-211ENST00000559257 MYLK3Q32MK0 819 aa9.16□□□□□ -0.94
USP3-211ENST00000559257 PAPD7Q5XG87 772 aaKnown RBP9.16□□□□□ -0.94
USP3-211ENST00000559257 SPECC1LQ69YQ0 1117 aa9.16□□□□□ -0.94
USP3-211ENST00000559257 ASRGL1Q7L266 308 aa9.16□□□□□ -0.94
USP3-211ENST00000559257 MAEAQ7L5Y9 396 aa9.16□□□□□ -0.94
USP3-211ENST00000559257 ZNF572Q7Z3I7 529 aaPredicted RBP9.16□□□□□ -0.94
USP3-211ENST00000559257 GSPT2Q8IYD1 628 aaKnown RBP9.16□□□□□ -0.94
USP3-211ENST00000559257 SIX5Q8N196 739 aa9.16□□□□□ -0.94
USP3-211ENST00000559257 OR7G1Q8NGA0 311 aa9.16□□□□□ -0.94
USP3-211ENST00000559257 FRS2Q8WU20 508 aa9.16□□□□□ -0.94
USP3-211ENST00000559257 GAB3Q8WWW8 586 aa9.16□□□□□ -0.94
USP3-211ENST00000559257 SGCDQ92629 289 aa9.16□□□□□ -0.94
USP3-211ENST00000559257 CCDC127Q96BQ5 260 aa9.16□□□□□ -0.94
USP3-211ENST00000559257 KLHL29Q96CT2 875 aa9.16□□□□□ -0.94
USP3-211ENST00000559257 CHMP6Q96FZ7 201 aa9.16□□□□□ -0.94
USP3-211ENST00000559257 UROC1Q96N76 676 aa9.16□□□□□ -0.94
USP3-211ENST00000559257 NSRP1Q9H0G5 558 aaKnown RBP9.16□□□□□ -0.94
USP3-211ENST00000559257 HSD3B7Q9H2F3 369 aa9.16□□□□□ -0.94
USP3-211ENST00000559257 ANO2Q9NQ90 1003 aa9.16□□□□□ -0.94
USP3-211ENST00000559257 PLAAQ9Y263 795 aa9.16□□□□□ -0.94
USP3-211ENST00000559257 ABCA9Q8IUA7 1624 aa9.15□□□□□ -0.94
USP3-211ENST00000559257 A0A0B4J203 849 aa9.15□□□□□ -0.94
USP3-211ENST00000559257 CCDC194A0A1B0GVG4 234 aa9.15□□□□□ -0.94
USP3-211ENST00000559257 TMEM114B3SHH9 223 aa9.15□□□□□ -0.94
USP3-211ENST00000559257 COL6A2P12110 1019 aa9.15□□□□□ -0.94
USP3-211ENST00000559257 FECHP22830 423 aa9.15□□□□□ -0.94
USP3-211ENST00000559257 VHLP40337 213 aa9.15□□□□□ -0.94
USP3-211ENST00000559257 CTC1Q2NKJ3 1217 aa9.15□□□□□ -0.94
USP3-211ENST00000559257 PARP6Q2NL67 630 aa9.15□□□□□ -0.94
USP3-211ENST00000559257 DPCR1Q3MIW9 517 aa9.15□□□□□ -0.94
USP3-211ENST00000559257 SNRNP48Q6IEG0 339 aaKnown RBP9.15□□□□□ -0.94
USP3-211ENST00000559257 FIP1L1Q6UN15 594 aaKnown RBP9.15□□□□□ -0.94
USP3-211ENST00000559257 UNC13DQ70J99 1090 aa9.15□□□□□ -0.94
USP3-211ENST00000559257 MARK2Q7KZI7 788 aaKnown RBP9.15□□□□□ -0.94
USP3-211ENST00000559257 KRT77Q7Z794 578 aa9.15□□□□□ -0.94
USP3-211ENST00000559257 DDX42Q86XP3 938 aaKnown RBP eCLIP9.15□□□□□ -0.94
USP3-211ENST00000559257 DDX55Q8NHQ9 600 aaKnown RBP eCLIP9.15□□□□□ -0.94
USP3-211ENST00000559257 PLEKHO2Q8TD55 490 aa9.15□□□□□ -0.94
USP3-211ENST00000559257 RAPGEF5Q92565 580 aa9.15□□□□□ -0.94
USP3-211ENST00000559257 ASIC4Q96FT7 647 aa9.15□□□□□ -0.94
USP3-211ENST00000559257 COG3Q96JB2 828 aa9.15□□□□□ -0.94
USP3-211ENST00000559257 HEPHQ9BQS7 1158 aa9.15□□□□□ -0.94
USP3-211ENST00000559257 PPP1R12CQ9BZL4 782 aa9.15□□□□□ -0.94
USP3-211ENST00000559257 ECT2Q9H8V3 914 aa9.15□□□□□ -0.94
USP3-211ENST00000559257 TMBIM4Q9HC24 238 aa9.15□□□□□ -0.94
USP3-211ENST00000559257 FAM114A2Q9NRY5 505 aa9.15□□□□□ -0.94
USP3-211ENST00000559257 ATPIF1Q9UII2 106 aa9.15□□□□□ -0.94
USP3-211ENST00000559257 ZBTB1Q9Y2K1 713 aa9.15□□□□□ -0.94
USP3-211ENST00000559257 PCDHGB3Q9Y5G1 929 aa9.15□□□□□ -0.94
USP3-211ENST00000559257 CDK2AP1O14519 115 aa9.15□□□□□ -0.95
USP3-211ENST00000559257 PEX11AO75192 247 aa9.15□□□□□ -0.95
USP3-211ENST00000559257 CHRNB1P11230 501 aa9.15□□□□□ -0.95
USP3-211ENST00000559257 CDK4P11802 303 aa9.15□□□□□ -0.95
USP3-211ENST00000559257 BTF3P20290 206 aaKnown RBP9.15□□□□□ -0.95
USP3-211ENST00000559257 GALK1P51570 392 aa9.15□□□□□ -0.95
USP3-211ENST00000559257 COPS2P61201 443 aa9.15□□□□□ -0.95
USP3-211ENST00000559257 RASSF7Q02833 373 aa9.15□□□□□ -0.95
USP3-211ENST00000559257 BNIP1Q12981 228 aa9.15□□□□□ -0.95
USP3-211ENST00000559257 MTX1Q13505 466 aa9.15□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms