RNA–Protein interactions for RNA: ENST00000558518.5

LDLR-208, Transcript of low density lipoprotein receptor, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LDLR, Length 3,617 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-208ENST00000558518 GLE1Q53GS7 698 aaKnown RBP12.36□□□□□ -0.43
LDLR-208ENST00000558518 SGSM3Q96HU1 749 aa12.36□□□□□ -0.43
LDLR-208ENST00000558518 PSMD1Q99460 953 aa12.36□□□□□ -0.43
LDLR-208ENST00000558518 BCAS3Q9H6U6 928 aa12.36□□□□□ -0.43
LDLR-208ENST00000558518 A0A1B0GUA9 196 aa12.36□□□□□ -0.43
LDLR-208ENST00000558518 A0A1W2PQJ5 194 aa12.36□□□□□ -0.43
LDLR-208ENST00000558518 ENO4A6NNW6 628 aa12.36□□□□□ -0.43
LDLR-208ENST00000558518 RCAN1P53805 252 aa12.36□□□□□ -0.43
LDLR-208ENST00000558518 IFI35P80217 286 aaPredicted RBP12.36□□□□□ -0.43
LDLR-208ENST00000558518 CCDC26Q8TAB7 109 aa12.36□□□□□ -0.43
LDLR-208ENST00000558518 FMO2Q99518 471 aa12.36□□□□□ -0.43
LDLR-208ENST00000558518 INTS9Q9NV88 658 aaKnown RBP12.36□□□□□ -0.43
LDLR-208ENST00000558518 CEP72Q9P209 647 aa12.36□□□□□ -0.43
LDLR-208ENST00000558518 FLT1P17948 1338 aa12.36□□□□□ -0.43
LDLR-208ENST00000558518 A6NNZ2 444 aa12.36□□□□□ -0.43
LDLR-208ENST00000558518 CETN3O15182 167 aa12.36□□□□□ -0.43
LDLR-208ENST00000558518 LDHBP07195 334 aaKnown RBP12.36□□□□□ -0.43
LDLR-208ENST00000558518 ECM1Q16610 540 aa12.36□□□□□ -0.43
LDLR-208ENST00000558518 TUBB8Q3ZCM7 444 aa12.36□□□□□ -0.43
LDLR-208ENST00000558518 MEI1Q5TIA1 1274 aa12.36□□□□□ -0.43
LDLR-208ENST00000558518 ZNF571Q7Z3V5 609 aaPredicted RBP12.36□□□□□ -0.43
LDLR-208ENST00000558518 SPATS2Q86XZ4 545 aaKnown RBP12.36□□□□□ -0.43
LDLR-208ENST00000558518 GLYCTKQ8IVS8 523 aa12.36□□□□□ -0.43
LDLR-208ENST00000558518 NSMCE1Q8WV22 266 aa12.36□□□□□ -0.43
LDLR-208ENST00000558518 RSRC1Q96IZ7 334 aaKnown RBP12.36□□□□□ -0.43
LDLR-208ENST00000558518 DONSONQ9NYP3 566 aa12.36□□□□□ -0.43
LDLR-208ENST00000558518 ANAPC4Q9UJX5 808 aa12.36□□□□□ -0.43
LDLR-208ENST00000558518 TRIP13Q15645 432 aaPredicted RBP12.35□□□□□ -0.43
LDLR-208ENST00000558518 PHLDB2Q86SQ0 1253 aa12.35□□□□□ -0.43
LDLR-208ENST00000558518 LRRC34Q8IZ02 419 aa12.35□□□□□ -0.43
LDLR-208ENST00000558518 ZNF34Q8IZ26 560 aa12.35□□□□□ -0.43
LDLR-208ENST00000558518 INPP4AQ96PE3 977 aaPredicted RBP12.35□□□□□ -0.43
LDLR-208ENST00000558518 PNMA5Q96PV4 448 aa12.35□□□□□ -0.43
LDLR-208ENST00000558518 PCDHA12Q9UN75 941 aa12.35□□□□□ -0.43
LDLR-208ENST00000558518 ADAMTS2O95450 1211 aa12.35□□□□□ -0.43
LDLR-208ENST00000558518 PRLRP16471 622 aa12.35□□□□□ -0.43
LDLR-208ENST00000558518 GSCP56915 257 aaPredicted RBP12.35□□□□□ -0.43
LDLR-208ENST00000558518 EXOC3L4Q17RC7 722 aa12.35□□□□□ -0.43
LDLR-208ENST00000558518 DENND2CQ68D51 928 aa12.35□□□□□ -0.43
LDLR-208ENST00000558518 RNF10Q8N5U6 811 aaKnown RBP12.35□□□□□ -0.43
LDLR-208ENST00000558518 CTNNBL1Q8WYA6 563 aaPredicted RBP12.35□□□□□ -0.43
LDLR-208ENST00000558518 NOD2Q9HC29 1040 aa12.35□□□□□ -0.43
LDLR-208ENST00000558518 EMILIN3Q9NT22 766 aa12.35□□□□□ -0.43
LDLR-208ENST00000558518 HDAC9Q9UKV0 1011 aa12.35□□□□□ -0.43
LDLR-208ENST00000558518 THRAP3Q9Y2W1 955 aaKnown RBP12.35□□□□□ -0.43
LDLR-208ENST00000558518 MYH7P12883 1935 aa12.35□□□□□ -0.43
LDLR-208ENST00000558518 POTEFA5A3E0 1075 aa12.35□□□□□ -0.43
LDLR-208ENST00000558518 ACSL3O95573 720 aa12.35□□□□□ -0.43
LDLR-208ENST00000558518 H2AFZP0C0S5 128 aa12.35□□□□□ -0.43
LDLR-208ENST00000558518 POTEIP0CG38 1075 aa12.35□□□□□ -0.43
LDLR-208ENST00000558518 GRIK5Q16478 980 aa12.35□□□□□ -0.43
LDLR-208ENST00000558518 UBAP2Q5T6F2 1119 aaKnown RBP12.35□□□□□ -0.43
LDLR-208ENST00000558518 ZNF746Q6NUN9 644 aaPredicted RBP12.35□□□□□ -0.43
LDLR-208ENST00000558518 POTEGQ6S5H5 508 aa12.35□□□□□ -0.43
LDLR-208ENST00000558518 POTEEQ6S8J3 1075 aa12.35□□□□□ -0.43
LDLR-208ENST00000558518 CAPN12Q6ZSI9 719 aa12.35□□□□□ -0.43
LDLR-208ENST00000558518 H2AFVQ71UI9 128 aa12.35□□□□□ -0.43
LDLR-208ENST00000558518 VPS36Q86VN1 386 aa12.35□□□□□ -0.43
LDLR-208ENST00000558518 ZSCAN29Q8IWY8 852 aaPredicted RBP12.35□□□□□ -0.43
LDLR-208ENST00000558518 SPDL1Q96EA4 605 aa12.35□□□□□ -0.43
LDLR-208ENST00000558518 MTFR1LQ9H019 292 aa12.35□□□□□ -0.43
LDLR-208ENST00000558518 ISCUQ9H1K1 167 aa12.35□□□□□ -0.43
LDLR-208ENST00000558518 USP17L15C9J2P7 530 aa12.34□□□□□ -0.43
LDLR-208ENST00000558518 USP17L13C9JLJ4 530 aa12.34□□□□□ -0.43
LDLR-208ENST00000558518 USP17L11C9JVI0 530 aa12.34□□□□□ -0.43
LDLR-208ENST00000558518 USP17L18D6R9N7 530 aa12.34□□□□□ -0.43
LDLR-208ENST00000558518 USP17L22D6RA61 530 aa12.34□□□□□ -0.43
LDLR-208ENST00000558518 USP17L17D6RBQ6 530 aa12.34□□□□□ -0.43
LDLR-208ENST00000558518 USP17L19D6RCP7 530 aa12.34□□□□□ -0.43
LDLR-208ENST00000558518 USP17L20D6RJB6 530 aa12.34□□□□□ -0.43
LDLR-208ENST00000558518 TRAPPC3O43617 180 aa12.34□□□□□ -0.43
LDLR-208ENST00000558518 CHMP2AO43633 222 aa12.34□□□□□ -0.43
LDLR-208ENST00000558518 DIAPH2O60879 1101 aa12.34□□□□□ -0.43
LDLR-208ENST00000558518 NOL4O94818 638 aa12.34□□□□□ -0.43
LDLR-208ENST00000558518 ERFP50548 548 aa12.34□□□□□ -0.43
LDLR-208ENST00000558518 USP17L24Q0WX57 530 aa12.34□□□□□ -0.43
LDLR-208ENST00000558518 LRCH2Q5VUJ6 765 aa12.34□□□□□ -0.43
LDLR-208ENST00000558518 USP17L6PQ6QN14 398 aa12.34□□□□□ -0.43
LDLR-208ENST00000558518 CADPS2Q86UW7 1296 aa12.34□□□□□ -0.43
LDLR-208ENST00000558518 GUF1Q8N442 669 aaKnown RBP12.34□□□□□ -0.43
LDLR-208ENST00000558518 RAD54LQ92698 747 aa12.34□□□□□ -0.43
LDLR-208ENST00000558518 CHMP6Q96FZ7 201 aa12.34□□□□□ -0.43
LDLR-208ENST00000558518 CCDC87Q9NVE4 849 aa12.34□□□□□ -0.43
LDLR-208ENST00000558518 ARMCX3Q9UH62 379 aaPredicted RBP12.34□□□□□ -0.43
LDLR-208ENST00000558518 SCN11AQ9UI33 1791 aa12.34□□□□□ -0.43
LDLR-208ENST00000558518 A8MUI8 341 aa12.34□□□□□ -0.43
LDLR-208ENST00000558518 TRIM37O94972 964 aa12.34□□□□□ -0.43
LDLR-208ENST00000558518 TAL1P17542 331 aaPredicted RBP12.34□□□□□ -0.43
LDLR-208ENST00000558518 SNX1Q13596 522 aa12.34□□□□□ -0.43
LDLR-208ENST00000558518 TNIP1Q15025 636 aa12.34□□□□□ -0.43
LDLR-208ENST00000558518 KCTD1Q719H9 257 aa12.34□□□□□ -0.43
LDLR-208ENST00000558518 EPS8L3Q8TE67 593 aaKnown RBP12.34□□□□□ -0.43
LDLR-208ENST00000558518 DDX25Q9UHL0 483 aaKnown RBP12.34□□□□□ -0.43
LDLR-208ENST00000558518 TRIM33Q9UPN9 1127 aa12.34□□□□□ -0.43
LDLR-208ENST00000558518 ECM29Q5VYK3 1845 aa12.34□□□□□ -0.43
LDLR-208ENST00000558518 GCNT3O95395 438 aa12.34□□□□□ -0.43
LDLR-208ENST00000558518 PLCG2P16885 1265 aa12.34□□□□□ -0.43
LDLR-208ENST00000558518 KCNJ1P48048 391 aa12.34□□□□□ -0.43
LDLR-208ENST00000558518 ADCY7P51828 1080 aa12.34□□□□□ -0.43
LDLR-208ENST00000558518 ZFYVE27Q5T4F4 411 aa12.34□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms