RNA–Protein interactions for RNA: ENST00000558469.5

CUX1-216, Transcript of cut like homeobox 1, humanhuman

TSL 4

Gene CUX1, Length 588 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-216ENST00000558469 SNX29Q8TEQ0 813 aa10.79□□□□□ -0.68
CUX1-216ENST00000558469 AFG1LQ8WV93 481 aa10.79□□□□□ -0.68
CUX1-216ENST00000558469 SEPT1Q8WYJ6 367 aa10.79□□□□□ -0.68
CUX1-216ENST00000558469 DYDC2Q96IM9 177 aa10.79□□□□□ -0.68
CUX1-216ENST00000558469 EIF2AK1Q9BQI3 630 aaKnown RBP10.79□□□□□ -0.68
CUX1-216ENST00000558469 MMTAG2Q9BU76 263 aaKnown RBP10.79□□□□□ -0.68
CUX1-216ENST00000558469 PANK2Q9BZ23 570 aa10.79□□□□□ -0.68
CUX1-216ENST00000558469 UNC93B1Q9H1C4 597 aa10.79□□□□□ -0.68
CUX1-216ENST00000558469 FAM13BQ9NYF5 915 aa10.79□□□□□ -0.68
CUX1-216ENST00000558469 DDX20Q9UHI6 824 aaKnown RBP10.79□□□□□ -0.68
CUX1-216ENST00000558469 MYH11P35749 1972 aa10.79□□□□□ -0.68
CUX1-216ENST00000558469 SYNRGQ9UMZ2 1314 aa10.79□□□□□ -0.68
CUX1-216ENST00000558469 BACH1O14867 736 aa10.78□□□□□ -0.68
CUX1-216ENST00000558469 MED24O75448 989 aa10.78□□□□□ -0.68
CUX1-216ENST00000558469 PGK1P00558 417 aa10.78□□□□□ -0.68
CUX1-216ENST00000558469 P4HBP07237 508 aaKnown RBP10.78□□□□□ -0.68
CUX1-216ENST00000558469 MMP3P08254 477 aa10.78□□□□□ -0.68
CUX1-216ENST00000558469 C6orf222P0C671 652 aaPredicted RBP10.78□□□□□ -0.68
CUX1-216ENST00000558469 CCL5P13501 91 aa10.78□□□□□ -0.68
CUX1-216ENST00000558469 RPA1P27694 616 aa10.78□□□□□ -0.68
CUX1-216ENST00000558469 TXLNAP40222 546 aa10.78□□□□□ -0.68
CUX1-216ENST00000558469 GJA9P57773 515 aa10.78□□□□□ -0.68
CUX1-216ENST00000558469 UBE2HP62256 183 aa10.78□□□□□ -0.68
CUX1-216ENST00000558469 IRX5P78411 483 aaPredicted RBP10.78□□□□□ -0.68
CUX1-216ENST00000558469 BEX3Q00994 111 aa10.78□□□□□ -0.68
CUX1-216ENST00000558469 CYP4A11Q02928 519 aa10.78□□□□□ -0.68
CUX1-216ENST00000558469 CTTNQ14247 550 aaKnown RBP10.78□□□□□ -0.68
CUX1-216ENST00000558469 KARSQ15046 597 aaKnown RBP10.78□□□□□ -0.68
CUX1-216ENST00000558469 MTFR1Q15390 333 aa10.78□□□□□ -0.68
CUX1-216ENST00000558469 UTP14CQ5TAP6 766 aaKnown RBP10.78□□□□□ -0.68
CUX1-216ENST00000558469 HAUS3Q68CZ6 603 aa10.78□□□□□ -0.68
CUX1-216ENST00000558469 SWSAP1Q6NVH7 229 aa10.78□□□□□ -0.68
CUX1-216ENST00000558469 TPH2Q8IWU9 490 aa10.78□□□□□ -0.68
CUX1-216ENST00000558469 RASSF8Q8NHQ8 419 aa10.78□□□□□ -0.68
CUX1-216ENST00000558469 MRPS27Q92552 414 aaKnown RBP10.78□□□□□ -0.68
CUX1-216ENST00000558469 CALML4Q96GE6 196 aa10.78□□□□□ -0.68
CUX1-216ENST00000558469 CDK5RAP3Q96JB5 506 aa10.78□□□□□ -0.68
CUX1-216ENST00000558469 PLIN2Q99541 437 aa10.78□□□□□ -0.68
CUX1-216ENST00000558469 HSD17B14Q9BPX1 270 aa10.78□□□□□ -0.68
CUX1-216ENST00000558469 POLR3CQ9BUI4 534 aaPredicted RBP10.78□□□□□ -0.68
CUX1-216ENST00000558469 CCSER1Q9C0I3 900 aa10.78□□□□□ -0.68
CUX1-216ENST00000558469 XRN2Q9H0D6 950 aaKnown RBP eCLIP10.78□□□□□ -0.681e-6■■■■□ 21
CUX1-216ENST00000558469 RNF208Q9H0X6 261 aa10.78□□□□□ -0.68
CUX1-216ENST00000558469 GOLPH3LQ9H4A5 285 aa10.78□□□□□ -0.68
CUX1-216ENST00000558469 SPC25Q9HBM1 224 aa10.78□□□□□ -0.68
CUX1-216ENST00000558469 XPNPEP3Q9NQH7 507 aa10.78□□□□□ -0.68
CUX1-216ENST00000558469 RGL1Q9NZL6 768 aa10.78□□□□□ -0.68
CUX1-216ENST00000558469 GABBR1Q9UBS5 961 aa10.78□□□□□ -0.68
CUX1-216ENST00000558469 PCDHB13Q9Y5F0 798 aa10.78□□□□□ -0.68
CUX1-216ENST00000558469 STK24Q9Y6E0 443 aa10.78□□□□□ -0.68
CUX1-216ENST00000558469 TRIP12Q14669 1992 aaPredicted RBP10.77□□□□□ -0.68
CUX1-216ENST00000558469 EVPLQ92817 2033 aa10.77□□□□□ -0.68
CUX1-216ENST00000558469 POTEB3A0JP26 581 aa10.77□□□□□ -0.69
CUX1-216ENST00000558469 A6NJR5 290 aa10.77□□□□□ -0.69
CUX1-216ENST00000558469 MSCO60682 206 aa10.77□□□□□ -0.69
CUX1-216ENST00000558469 PPFIA4O75335 1185 aa10.77□□□□□ -0.69
CUX1-216ENST00000558469 SLITRK3O94933 977 aa10.77□□□□□ -0.69
CUX1-216ENST00000558469 SPATA31C1P0DKV0 1188 aa10.77□□□□□ -0.69
CUX1-216ENST00000558469 PYGBP11216 843 aa10.77□□□□□ -0.69
CUX1-216ENST00000558469 PFKFB1P16118 471 aa10.77□□□□□ -0.69
CUX1-216ENST00000558469 CPT1AP50416 773 aa10.77□□□□□ -0.69
CUX1-216ENST00000558469 NDUFA8P51970 172 aa10.77□□□□□ -0.69
CUX1-216ENST00000558469 GSE1Q14687 1217 aa10.77□□□□□ -0.69
CUX1-216ENST00000558469 FSCN1Q16658 493 aaKnown RBP10.77□□□□□ -0.69
CUX1-216ENST00000558469 UGCGQ16739 394 aa10.77□□□□□ -0.69
CUX1-216ENST00000558469 DGKDQ16760 1214 aa10.77□□□□□ -0.69
CUX1-216ENST00000558469 BRDTQ58F21 947 aaPredicted RBP10.77□□□□□ -0.69
CUX1-216ENST00000558469 GNASQ5JWF2 1037 aa10.77□□□□□ -0.69
CUX1-216ENST00000558469 FAM160B1Q5W0V3 765 aa10.77□□□□□ -0.69
CUX1-216ENST00000558469 LHX8Q68G74 356 aa10.77□□□□□ -0.69
CUX1-216ENST00000558469 POTEBQ6S5H4 581 aa10.77□□□□□ -0.69
CUX1-216ENST00000558469 CATSPER3Q86XQ3 398 aa10.77□□□□□ -0.69
CUX1-216ENST00000558469 CCDC60Q8IWA6 550 aaPredicted RBP10.77□□□□□ -0.69
CUX1-216ENST00000558469 PDILTQ8N807 584 aa10.77□□□□□ -0.69
CUX1-216ENST00000558469 GLG1Q92896 1179 aa10.77□□□□□ -0.69
CUX1-216ENST00000558469 LXNQ9BS40 222 aa10.77□□□□□ -0.69
CUX1-216ENST00000558469 UPF3AQ9H1J1 476 aaKnown RBP10.77□□□□□ -0.69
CUX1-216ENST00000558469 AZI2Q9H6S1 392 aa10.77□□□□□ -0.69
CUX1-216ENST00000558469 TUFT1Q9NNX1 390 aa10.77□□□□□ -0.69
CUX1-216ENST00000558469 ZNF302Q9NR11 478 aa10.77□□□□□ -0.69
CUX1-216ENST00000558469 CCDC39Q9UFE4 941 aa10.77□□□□□ -0.69
CUX1-216ENST00000558469 KCNH3Q9ULD8 1083 aa10.77□□□□□ -0.69
CUX1-216ENST00000558469 KIAA1024Q9UPX6 916 aa10.77□□□□□ -0.69
CUX1-216ENST00000558469 KDM3AQ9Y4C1 1321 aa10.77□□□□□ -0.69
CUX1-216ENST00000558469 A0A087WWV3 80 aa10.76□□□□□ -0.69
CUX1-216ENST00000558469 A0A087X0B3 334 aa10.76□□□□□ -0.69
CUX1-216ENST00000558469 IGKV6D-21A0A0A0MT36 114 aa10.76□□□□□ -0.69
CUX1-216ENST00000558469 MYADML2A6NDP7 307 aa10.76□□□□□ -0.69
CUX1-216ENST00000558469 DDX11L8A8MPP1 907 aa10.76□□□□□ -0.69
CUX1-216ENST00000558469 CTAGE5O15320 804 aa10.76□□□□□ -0.69
CUX1-216ENST00000558469 POLR2DO15514 142 aaKnown RBP10.76□□□□□ -0.69
CUX1-216ENST00000558469 LGR5O75473 907 aa10.76□□□□□ -0.69
CUX1-216ENST00000558469 LGALS2P05162 132 aa10.76□□□□□ -0.69
CUX1-216ENST00000558469 MYL3P08590 195 aa10.76□□□□□ -0.69
CUX1-216ENST00000558469 ZNF286BP0CG31 522 aa10.76□□□□□ -0.69
CUX1-216ENST00000558469 QARSP47897 775 aaKnown RBP10.76□□□□□ -0.69
CUX1-216ENST00000558469 STAT5BP51692 787 aa10.76□□□□□ -0.69
CUX1-216ENST00000558469 PSMC5P62195 406 aa10.76□□□□□ -0.69
CUX1-216ENST00000558469 GRB10Q13322 594 aa10.76□□□□□ -0.69
CUX1-216ENST00000558469 ECM1Q16610 540 aa10.76□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms