RNA–Protein interactions for RNA: ENST00000558285.5

USP3-208, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best) BASIC

Gene USP3, Length 1,742 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-208ENST00000558285 PKN1Q16512 942 aa9.81□□□□□ -0.84
USP3-208ENST00000558285 ODR4Q5SWX8 454 aa9.81□□□□□ -0.84
USP3-208ENST00000558285 TMEM63BQ5T3F8 832 aa9.81□□□□□ -0.84
USP3-208ENST00000558285 ZNF746Q6NUN9 644 aaPredicted RBP9.81□□□□□ -0.84
USP3-208ENST00000558285 LRRC8DQ7L1W4 858 aa9.81□□□□□ -0.84
USP3-208ENST00000558285 PLPPR4Q7Z2D5 763 aa9.81□□□□□ -0.84
USP3-208ENST00000558285 FAM184AQ8NB25 1140 aa9.81□□□□□ -0.84
USP3-208ENST00000558285 RDM1Q8NG50 284 aa9.81□□□□□ -0.84
USP3-208ENST00000558285 HERVK_113Q902F9 699 aa9.81□□□□□ -0.84
USP3-208ENST00000558285 GTF3C6Q969F1 213 aa9.81□□□□□ -0.84
USP3-208ENST00000558285 C16orf70Q9BSU1 422 aa9.81□□□□□ -0.84
USP3-208ENST00000558285 AGO4Q9HCK5 861 aaKnown RBP9.81□□□□□ -0.84
USP3-208ENST00000558285 PKD2L1Q9P0L9 805 aa9.81□□□□□ -0.84
USP3-208ENST00000558285 TPCN1Q9ULQ1 816 aa9.81□□□□□ -0.84
USP3-208ENST00000558285 TRPC6Q9Y210 931 aa9.81□□□□□ -0.84
USP3-208ENST00000558285 SAMM50Q9Y512 469 aa9.81□□□□□ -0.84
USP3-208ENST00000558285 GRIN2DO15399 1336 aa9.81□□□□□ -0.84
USP3-208ENST00000558285 WDR64B1ANS9 1081 aa9.8□□□□□ -0.84
USP3-208ENST00000558285 SORBS3O60504 671 aa9.8□□□□□ -0.84
USP3-208ENST00000558285 GAS7O60861 476 aa9.8□□□□□ -0.84
USP3-208ENST00000558285 BAG4O95429 457 aaKnown RBP9.8□□□□□ -0.84
USP3-208ENST00000558285 IQCF3P0C7M6 154 aa9.8□□□□□ -0.84
USP3-208ENST00000558285 CYP2C9P11712 490 aa9.8□□□□□ -0.84
USP3-208ENST00000558285 CIITAP33076 1130 aa9.8□□□□□ -0.84
USP3-208ENST00000558285 KRT2P35908 639 aa9.8□□□□□ -0.84
USP3-208ENST00000558285 STAT5BP51692 787 aa9.8□□□□□ -0.84
USP3-208ENST00000558285 JAK3P52333 1124 aa9.8□□□□□ -0.84
USP3-208ENST00000558285 CCL23P55773 120 aa9.8□□□□□ -0.84
USP3-208ENST00000558285 RBL2Q08999 1139 aa9.8□□□□□ -0.84
USP3-208ENST00000558285 SCRN1Q12765 414 aa9.8□□□□□ -0.84
USP3-208ENST00000558285 COL9A3Q14050 684 aaPredicted RBP9.8□□□□□ -0.84
USP3-208ENST00000558285 PRR16Q569H4 304 aa9.8□□□□□ -0.84
USP3-208ENST00000558285 TYW1BQ6NUM6 668 aa9.8□□□□□ -0.84
USP3-208ENST00000558285 CKAP2LQ8IYA6 745 aa9.8□□□□□ -0.84
USP3-208ENST00000558285 KAT2BQ92831 832 aa9.8□□□□□ -0.84
USP3-208ENST00000558285 SLC9A7Q96T83 725 aa9.8□□□□□ -0.84
USP3-208ENST00000558285 RIT2Q99578 217 aa9.8□□□□□ -0.84
USP3-208ENST00000558285 TMEM260Q9NX78 707 aa9.8□□□□□ -0.84
USP3-208ENST00000558285 THPOP40225 353 aa9.79□□□□□ -0.84
USP3-208ENST00000558285 ACTR2P61160 394 aa9.79□□□□□ -0.84
USP3-208ENST00000558285 IER5Q5VY09 327 aa9.79□□□□□ -0.84
USP3-208ENST00000558285 GDF6Q6KF10 455 aaPredicted RBP9.79□□□□□ -0.84
USP3-208ENST00000558285 ZNF365Q70YC5 407 aa9.79□□□□□ -0.84
USP3-208ENST00000558285 SERINC5Q86VE9 423 aa9.79□□□□□ -0.84
USP3-208ENST00000558285 PHOSPHO2Q8TCD6 241 aa9.79□□□□□ -0.84
USP3-208ENST00000558285 APBB2Q92870 758 aa9.79□□□□□ -0.84
USP3-208ENST00000558285 ZFP91Q96JP5 570 aaPredicted RBP9.79□□□□□ -0.84
USP3-208ENST00000558285 TEKT3Q9BXF9 490 aa9.79□□□□□ -0.84
USP3-208ENST00000558285 ZNF302Q9NR11 478 aa9.79□□□□□ -0.84
USP3-208ENST00000558285 PCDHA10Q9Y5I2 948 aa9.79□□□□□ -0.84
USP3-208ENST00000558285 COL1A2P08123 1366 aa9.79□□□□□ -0.84
USP3-208ENST00000558285 SCN10AQ9Y5Y9 1956 aa9.79□□□□□ -0.84
USP3-208ENST00000558285 ABHD14A-ACY1A0A1B0GW23 586 aa9.79□□□□□ -0.84
USP3-208ENST00000558285 RSPH10B2B2RC85 870 aa9.79□□□□□ -0.84
USP3-208ENST00000558285 HBP1O60381 514 aa9.79□□□□□ -0.84
USP3-208ENST00000558285 RSPH10BP0C881 870 aa9.79□□□□□ -0.84
USP3-208ENST00000558285 SEMA3FQ13275 785 aa9.79□□□□□ -0.84
USP3-208ENST00000558285 IKBKEQ14164 716 aa9.79□□□□□ -0.84
USP3-208ENST00000558285 TMEM240Q5SV17 173 aa9.79□□□□□ -0.84
USP3-208ENST00000558285 CNKSR3Q6P9H4 555 aa9.79□□□□□ -0.84
USP3-208ENST00000558285 NEK8Q86SG6 692 aa9.79□□□□□ -0.84
USP3-208ENST00000558285 EXOC8Q8IYI6 725 aa9.79□□□□□ -0.84
USP3-208ENST00000558285 USP38Q8NB14 1042 aa9.79□□□□□ -0.84
USP3-208ENST00000558285 TBCKQ8TEA7 893 aa9.79□□□□□ -0.84
USP3-208ENST00000558285 SEPT8Q92599 483 aa9.79□□□□□ -0.84
USP3-208ENST00000558285 PGBD1Q96JS3 809 aa9.79□□□□□ -0.84
USP3-208ENST00000558285 BUD13Q9BRD0 619 aaKnown RBP eCLIP9.79□□□□□ -0.843e-7■□□□□ 11.3
USP3-208ENST00000558285 NRBP2Q9NSY0 501 aa9.79□□□□□ -0.84
USP3-208ENST00000558285 TUBE1Q9UJT0 475 aa9.79□□□□□ -0.84
USP3-208ENST00000558285 TRIOBPQ9H2D6 2365 aa9.78□□□□□ -0.84
USP3-208ENST00000558285 POTEB3A0JP26 581 aa9.78□□□□□ -0.84
USP3-208ENST00000558285 LGR5O75473 907 aa9.78□□□□□ -0.84
USP3-208ENST00000558285 CKBP12277 381 aa9.78□□□□□ -0.84
USP3-208ENST00000558285 PTGS1P23219 599 aa9.78□□□□□ -0.84
USP3-208ENST00000558285 TMOD1P28289 359 aa9.78□□□□□ -0.84
USP3-208ENST00000558285 RBM25P49756 843 aaKnown RBP9.78□□□□□ -0.84
USP3-208ENST00000558285 GRIK4Q16099 956 aa9.78□□□□□ -0.84
USP3-208ENST00000558285 Q4G0T1 1027 aa9.78□□□□□ -0.84
USP3-208ENST00000558285 ZNF484Q5JVG2 852 aa9.78□□□□□ -0.84
USP3-208ENST00000558285 LRCH2Q5VUJ6 765 aa9.78□□□□□ -0.84
USP3-208ENST00000558285 PDXDC2PQ6P474 469 aa9.78□□□□□ -0.84
USP3-208ENST00000558285 POTEBQ6S5H4 581 aa9.78□□□□□ -0.84
USP3-208ENST00000558285 DEFB128Q7Z7B8 93 aa9.78□□□□□ -0.84
USP3-208ENST00000558285 SLFN12Q8IYM2 578 aa9.78□□□□□ -0.84
USP3-208ENST00000558285 NME8Q8N427 588 aa9.78□□□□□ -0.84
USP3-208ENST00000558285 DEFB123Q8N688 67 aa9.78□□□□□ -0.84
USP3-208ENST00000558285 FAM20AQ96MK3 541 aa9.78□□□□□ -0.84
USP3-208ENST00000558285 PHF20Q9BVI0 1012 aa9.78□□□□□ -0.84
USP3-208ENST00000558285 DDX25Q9UHL0 483 aaKnown RBP9.78□□□□□ -0.84
USP3-208ENST00000558285 CYP3A7-CYP3A51PA0A087WV96 503 aa9.77□□□□□ -0.85
USP3-208ENST00000558285 FAM86B1E9PN63 330 aa9.77□□□□□ -0.85
USP3-208ENST00000558285 DDX39AO00148 427 aaKnown RBP9.77□□□□□ -0.85
USP3-208ENST00000558285 TBX3O15119 743 aa9.77□□□□□ -0.85
USP3-208ENST00000558285 MAGEB2O15479 319 aa9.77□□□□□ -0.85
USP3-208ENST00000558285 ATP9AO75110 1047 aa9.77□□□□□ -0.85
USP3-208ENST00000558285 AMHP03971 560 aa9.77□□□□□ -0.85
USP3-208ENST00000558285 TPM2P07951 284 aa9.77□□□□□ -0.85
USP3-208ENST00000558285 FAM86B2P0C5J1 330 aa9.77□□□□□ -0.85
USP3-208ENST00000558285 ARP10275 920 aa9.77□□□□□ -0.85
USP3-208ENST00000558285 ACRP10323 421 aa9.77□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms