RNA–Protein interactions for RNA: ENST00000558013.5

LDLR-207, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LDLR, Length 3,144 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-207ENST00000558013 GUCY2DQ02846 1103 aa14.17□□□□□ -0.14
LDLR-207ENST00000558013 IKQ13123 557 aaPredicted RBP14.17□□□□□ -0.14
LDLR-207ENST00000558013 SLC18A3Q16572 532 aa14.17□□□□□ -0.14
LDLR-207ENST00000558013 HYIQ5T013 277 aa14.17□□□□□ -0.14
LDLR-207ENST00000558013 ZNF571Q7Z3V5 609 aaPredicted RBP14.17□□□□□ -0.14
LDLR-207ENST00000558013 GOLGA6L1Q8N7Z2 621 aa14.17□□□□□ -0.14
LDLR-207ENST00000558013 KRT12Q99456 494 aa14.17□□□□□ -0.14
LDLR-207ENST00000558013 LRRC27Q9C0I9 530 aa14.17□□□□□ -0.14
LDLR-207ENST00000558013 EPB41L5Q9HCM4 733 aa14.17□□□□□ -0.14
LDLR-207ENST00000558013 GOLGA6AQ9NYA3 693 aa14.17□□□□□ -0.14
LDLR-207ENST00000558013 SMCHD1A6NHR9 2005 aa14.17□□□□□ -0.14
LDLR-207ENST00000558013 G3V3G9 751 aa14.17□□□□□ -0.14
LDLR-207ENST00000558013 RBAK-RBAKDNI3L0D1 243 aa14.17□□□□□ -0.14
LDLR-207ENST00000558013 AKAP3O75969 853 aa14.17□□□□□ -0.14
LDLR-207ENST00000558013 EPS15P42566 896 aa14.17□□□□□ -0.14
LDLR-207ENST00000558013 CRKP46108 304 aa14.17□□□□□ -0.14
LDLR-207ENST00000558013 NAB2Q15742 525 aa14.17□□□□□ -0.14
LDLR-207ENST00000558013 DCAF8Q5TAQ9 597 aa14.17□□□□□ -0.14
LDLR-207ENST00000558013 PPP1R18Q6NYC8 613 aa14.17□□□□□ -0.14
LDLR-207ENST00000558013 ZNF572Q7Z3I7 529 aaPredicted RBP14.17□□□□□ -0.14
LDLR-207ENST00000558013 ETNPPLQ8TBG4 499 aa14.17□□□□□ -0.14
LDLR-207ENST00000558013 RBM46Q8TBY0 533 aaKnown RBP14.17□□□□□ -0.14
LDLR-207ENST00000558013 TEKT1Q969V4 418 aa14.17□□□□□ -0.14
LDLR-207ENST00000558013 LENG9Q96B70 501 aa14.17□□□□□ -0.14
LDLR-207ENST00000558013 IQCDQ96DY2 449 aa14.17□□□□□ -0.14
LDLR-207ENST00000558013 GRID2IPA4D2P6 1211 aa14.17□□□□□ -0.14
LDLR-207ENST00000558013 TRIM37O94972 964 aa14.17□□□□□ -0.14
LDLR-207ENST00000558013 HLA-DOAP06340 250 aa14.17□□□□□ -0.14
LDLR-207ENST00000558013 TCERG1LQ5VWI1 586 aa14.17□□□□□ -0.14
LDLR-207ENST00000558013 CCDC70Q6NSX1 233 aa14.17□□□□□ -0.14
LDLR-207ENST00000558013 DPY19L2P1Q6NXN4 242 aa14.17□□□□□ -0.14
LDLR-207ENST00000558013 PIGOQ8TEQ8 1089 aa14.17□□□□□ -0.14
LDLR-207ENST00000558013 RUSC1Q9BVN2 902 aa14.17□□□□□ -0.14
LDLR-207ENST00000558013 SWAP70Q9UH65 585 aa14.17□□□□□ -0.14
LDLR-207ENST00000558013 HDAC9Q9UKV0 1011 aa14.17□□□□□ -0.14
LDLR-207ENST00000558013 EML1O00423 815 aa14.16□□□□□ -0.14
LDLR-207ENST00000558013 GCFC2P16383 781 aaKnown RBP14.16□□□□□ -0.14
LDLR-207ENST00000558013 CERKLQ49MI3 558 aaPredicted RBP14.16□□□□□ -0.14
LDLR-207ENST00000558013 TTMPQ5BVD1 217 aa14.16□□□□□ -0.14
LDLR-207ENST00000558013 KLHL7Q8IXQ5 586 aa14.16□□□□□ -0.14
LDLR-207ENST00000558013 BHMT2Q9H2M3 363 aa14.16□□□□□ -0.14
LDLR-207ENST00000558013 FAM198AQ9UFP1 575 aa14.16□□□□□ -0.14
LDLR-207ENST00000558013 F5H6K3 240 aa14.16□□□□□ -0.14
LDLR-207ENST00000558013 HEXIM1O94992 359 aaKnown RBP14.16□□□□□ -0.14
LDLR-207ENST00000558013 ADRA2BP18089 450 aa14.16□□□□□ -0.14
LDLR-207ENST00000558013 UBXN2AP68543 259 aa14.16□□□□□ -0.14
LDLR-207ENST00000558013 KLRC3Q07444 240 aa14.16□□□□□ -0.14
LDLR-207ENST00000558013 CFAP221Q4G0U5 840 aa14.16□□□□□ -0.14
LDLR-207ENST00000558013 IRF2BP2Q7Z5L9 587 aa14.16□□□□□ -0.14
LDLR-207ENST00000558013 CEP63Q96MT8 703 aa14.16□□□□□ -0.14
LDLR-207ENST00000558013 CWC15Q9P013 229 aaKnown RBP14.16□□□□□ -0.14
LDLR-207ENST00000558013 BCS1LQ9Y276 419 aa14.16□□□□□ -0.14
LDLR-207ENST00000558013 OPLAHO14841 1288 aa14.15□□□□□ -0.14
LDLR-207ENST00000558013 CETN3O15182 167 aa14.15□□□□□ -0.14
LDLR-207ENST00000558013 RRP1BQ14684 758 aaKnown RBP14.15□□□□□ -0.14
LDLR-207ENST00000558013 SAMD1Q6SPF0 538 aaPredicted RBP14.15□□□□□ -0.14
LDLR-207ENST00000558013 FAM76AQ8TAV0 307 aa14.15□□□□□ -0.14
LDLR-207ENST00000558013 KDM3AQ9Y4C1 1321 aa14.15□□□□□ -0.14
LDLR-207ENST00000558013 ARFGEF1Q9Y6D6 1849 aa14.15□□□□□ -0.14
LDLR-207ENST00000558013 VGLL3A8MV65 326 aa14.15□□□□□ -0.14
LDLR-207ENST00000558013 UCHL3P15374 230 aa14.15□□□□□ -0.14
LDLR-207ENST00000558013 ASIC2Q16515 512 aa14.15□□□□□ -0.14
LDLR-207ENST00000558013 CRYGNQ8WXF5 182 aa14.15□□□□□ -0.14
LDLR-207ENST00000558013 ZIM3Q96PE6 472 aa14.15□□□□□ -0.14
LDLR-207ENST00000558013 PCDHB13Q9Y5F0 798 aa14.15□□□□□ -0.14
LDLR-207ENST00000558013 PON1P27169 355 aa14.15□□□□□ -0.14
LDLR-207ENST00000558013 MEI1Q5TIA1 1274 aa14.15□□□□□ -0.14
LDLR-207ENST00000558013 RNF10Q8N5U6 811 aaKnown RBP14.15□□□□□ -0.14
LDLR-207ENST00000558013 EDEM3Q9BZQ6 932 aa14.15□□□□□ -0.14
LDLR-207ENST00000558013 ARMCX3Q9UH62 379 aaPredicted RBP14.15□□□□□ -0.14
LDLR-207ENST00000558013 FRMD3A2A2Y4 597 aa14.14□□□□□ -0.15
LDLR-207ENST00000558013 KLRG2A4D1S0 409 aaPredicted RBP14.14□□□□□ -0.15
LDLR-207ENST00000558013 KCNK3O14649 394 aa14.14□□□□□ -0.15
LDLR-207ENST00000558013 MSH4O15457 936 aa14.14□□□□□ -0.15
LDLR-207ENST00000558013 CHMP2AO43633 222 aa14.14□□□□□ -0.15
LDLR-207ENST00000558013 ATP1A2P50993 1020 aa14.14□□□□□ -0.15
LDLR-207ENST00000558013 IRAK1P51617 712 aa14.14□□□□□ -0.15
LDLR-207ENST00000558013 USP11P51784 963 aa14.14□□□□□ -0.15
LDLR-207ENST00000558013 ICA1Q05084 483 aa14.14□□□□□ -0.15
LDLR-207ENST00000558013 ITIH3Q06033 890 aa14.14□□□□□ -0.15
LDLR-207ENST00000558013 CTTNQ14247 550 aaKnown RBP14.14□□□□□ -0.15
LDLR-207ENST00000558013 ZC2HC1CQ53FD0 456 aaPredicted RBP14.14□□□□□ -0.15
LDLR-207ENST00000558013 INPP4AQ96PE3 977 aaPredicted RBP14.14□□□□□ -0.15
LDLR-207ENST00000558013 SPAG5Q96R06 1193 aa14.14□□□□□ -0.15
LDLR-207ENST00000558013 AP1M1Q9BXS5 423 aa14.14□□□□□ -0.15
LDLR-207ENST00000558013 AIPL1Q9NZN9 384 aa14.14□□□□□ -0.15
LDLR-207ENST00000558013 DNM3Q9UQ16 869 aa14.14□□□□□ -0.15
LDLR-207ENST00000558013 LY75O60449 1722 aa14.14□□□□□ -0.15
LDLR-207ENST00000558013 RPS6KA5O75582 802 aa14.14□□□□□ -0.15
LDLR-207ENST00000558013 NOP2P46087 812 aaKnown RBP14.14□□□□□ -0.15
LDLR-207ENST00000558013 MARSP56192 900 aaKnown RBP14.14□□□□□ -0.15
LDLR-207ENST00000558013 COG2Q14746 738 aa14.14□□□□□ -0.15
LDLR-207ENST00000558013 KNOP1Q1ED39 458 aaKnown RBP14.14□□□□□ -0.15
LDLR-207ENST00000558013 DDX42Q86XP3 938 aaKnown RBP eCLIP14.14□□□□□ -0.151e-7■■■□□ 15
LDLR-207ENST00000558013 CASKIN2Q8WXE0 1202 aa14.14□□□□□ -0.15
LDLR-207ENST00000558013 CCDC43Q96MW1 224 aaKnown RBP14.14□□□□□ -0.15
LDLR-207ENST00000558013 FRMD4AQ9P2Q2 1039 aaPredicted RBP14.14□□□□□ -0.15
LDLR-207ENST00000558013 MYH4Q9Y623 1939 aa14.14□□□□□ -0.15
LDLR-207ENST00000558013 A0A1W2PRG0 241 aa14.13□□□□□ -0.15
LDLR-207ENST00000558013 RAD51CO43502 376 aa14.13□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms