RNA–Protein interactions for RNA: ENST00000557740.5

SHMT2-235, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 569 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-235ENST00000557740 HLA-CQ95604 372 aa16.7■□□□□ 0.26
SHMT2-235ENST00000557740 OSBPL7Q9BZF2 842 aa16.7■□□□□ 0.26
SHMT2-235ENST00000557740 SUGCTQ9HAC7 445 aa16.7■□□□□ 0.26
SHMT2-235ENST00000557740 MBLAC1A4D2B0 266 aaPredicted RBP16.69■□□□□ 0.26
SHMT2-235ENST00000557740 RRN3P2A6NIE6 340 aa16.69■□□□□ 0.26
SHMT2-235ENST00000557740 CHRNA1P02708 482 aa16.69■□□□□ 0.26
SHMT2-235ENST00000557740 RPLP2P05387 115 aaKnown RBP16.69■□□□□ 0.26
SHMT2-235ENST00000557740 CPA1P15085 419 aa16.69■□□□□ 0.26
SHMT2-235ENST00000557740 ACTR2P61160 394 aa16.69■□□□□ 0.26
SHMT2-235ENST00000557740 APOBRQ0VD83 1088 aa16.69■□□□□ 0.26
SHMT2-235ENST00000557740 BLOC1S2Q6QNY1 142 aa16.69■□□□□ 0.26
SHMT2-235ENST00000557740 Q6ZUG5 572 aa16.69■□□□□ 0.26
SHMT2-235ENST00000557740 CYP2W1Q8TAV3 490 aa16.69■□□□□ 0.26
SHMT2-235ENST00000557740 SP7Q8TDD2 431 aaPredicted RBP16.69■□□□□ 0.26
SHMT2-235ENST00000557740 CCDC12Q8WUD4 166 aaPredicted RBP16.69■□□□□ 0.26
SHMT2-235ENST00000557740 BRF1Q92994 677 aa16.69■□□□□ 0.26
SHMT2-235ENST00000557740 PCYT2Q99447 389 aa16.69■□□□□ 0.26
SHMT2-235ENST00000557740 C17orf80Q9BSJ5 609 aa16.69■□□□□ 0.26
SHMT2-235ENST00000557740 FAM217BQ9NTX9 383 aaPredicted RBP16.69■□□□□ 0.26
SHMT2-235ENST00000557740 TMEM260Q9NX78 707 aa16.69■□□□□ 0.26
SHMT2-235ENST00000557740 NCOR1O75376 2440 aa16.69■□□□□ 0.26
SHMT2-235ENST00000557740 MICAL3Q7RTP6 2002 aa16.69■□□□□ 0.26
SHMT2-235ENST00000557740 LOC101059915A0A1B0GWI6 518 aaPredicted RBP16.68■□□□□ 0.26
SHMT2-235ENST00000557740 REC8O95072 547 aa16.68■□□□□ 0.26
SHMT2-235ENST00000557740 ARP10275 920 aa16.68■□□□□ 0.26
SHMT2-235ENST00000557740 SCG2P13521 617 aa16.68■□□□□ 0.26
SHMT2-235ENST00000557740 INSRRP14616 1297 aa16.68■□□□□ 0.26
SHMT2-235ENST00000557740 HSPA4P34932 840 aa16.68■□□□□ 0.26
SHMT2-235ENST00000557740 KCNQ1P51787 676 aa16.68■□□□□ 0.26
SHMT2-235ENST00000557740 MRPS6P82932 125 aaKnown RBP16.68■□□□□ 0.26
SHMT2-235ENST00000557740 PFKFB3Q16875 520 aaPredicted RBP16.68■□□□□ 0.26
SHMT2-235ENST00000557740 JAKMIP3Q5VZ66 844 aa16.68■□□□□ 0.26
SHMT2-235ENST00000557740 DNAJB3Q8WWF6 145 aa16.68■□□□□ 0.26
SHMT2-235ENST00000557740 KCNB2Q92953 911 aa16.68■□□□□ 0.26
SHMT2-235ENST00000557740 TOP1MTQ969P6 601 aa16.68■□□□□ 0.26
SHMT2-235ENST00000557740 SAMD11Q96NU1 681 aa16.68■□□□□ 0.26
SHMT2-235ENST00000557740 FAM49AQ9H0Q0 323 aaPredicted RBP16.68■□□□□ 0.26
SHMT2-235ENST00000557740 AGO4Q9HCK5 861 aaKnown RBP16.68■□□□□ 0.26
SHMT2-235ENST00000557740 SNX14Q9Y5W7 946 aa16.68■□□□□ 0.26
SHMT2-235ENST00000557740 M0QZ92 97 aa16.67■□□□□ 0.26
SHMT2-235ENST00000557740 MEIS1O00470 390 aa16.67■□□□□ 0.26
SHMT2-235ENST00000557740 PSMA5P28066 241 aa16.67■□□□□ 0.26
SHMT2-235ENST00000557740 ADD1P35611 737 aaKnown RBP16.67■□□□□ 0.26
SHMT2-235ENST00000557740 CLK2P49760 499 aaKnown RBP16.67■□□□□ 0.26
SHMT2-235ENST00000557740 STAT5BP51692 787 aa16.67■□□□□ 0.26
SHMT2-235ENST00000557740 MGAT3Q09327 533 aa16.67■□□□□ 0.26
SHMT2-235ENST00000557740 ITGB3BPQ13352 177 aaPredicted RBP16.67■□□□□ 0.26
SHMT2-235ENST00000557740 LPIN1Q14693 890 aa16.67■□□□□ 0.26
SHMT2-235ENST00000557740 MARCH8Q5T0T0 291 aa16.67■□□□□ 0.26
SHMT2-235ENST00000557740 NIPA1Q7RTP0 329 aa16.67■□□□□ 0.26
SHMT2-235ENST00000557740 C6orf50Q9HD87 102 aa16.67■□□□□ 0.26
SHMT2-235ENST00000557740 CDY2AQ9Y6F7 541 aa16.67■□□□□ 0.26
SHMT2-235ENST00000557740 ESYT2A0FGR8 921 aa16.66■□□□□ 0.26
SHMT2-235ENST00000557740 DDX39AO00148 427 aaKnown RBP16.66■□□□□ 0.26
SHMT2-235ENST00000557740 BACH1O14867 736 aa16.66■□□□□ 0.26
SHMT2-235ENST00000557740 BMP1P13497 986 aa16.66■□□□□ 0.26
SHMT2-235ENST00000557740 AKAP17AQ02040 695 aaKnown RBP16.66■□□□□ 0.26
SHMT2-235ENST00000557740 PLCB4Q15147 1175 aa16.66■□□□□ 0.26
SHMT2-235ENST00000557740 PTPROQ16827 1216 aa16.66■□□□□ 0.26
SHMT2-235ENST00000557740 EPC2Q52LR7 807 aa16.66■□□□□ 0.26
SHMT2-235ENST00000557740 FBXO47Q5MNV8 452 aa16.66■□□□□ 0.26
SHMT2-235ENST00000557740 IER5Q5VY09 327 aa16.66■□□□□ 0.26
SHMT2-235ENST00000557740 MCTP2Q6DN12 878 aa16.66■□□□□ 0.26
SHMT2-235ENST00000557740 TSHZ1Q6ZSZ6 1077 aa16.66■□□□□ 0.26
SHMT2-235ENST00000557740 PLPPR4Q7Z2D5 763 aa16.66■□□□□ 0.26
SHMT2-235ENST00000557740 PLA2G4DQ86XP0 818 aa16.66■□□□□ 0.26
SHMT2-235ENST00000557740 REXO1Q8N1G1 1221 aaKnown RBP16.66■□□□□ 0.26
SHMT2-235ENST00000557740 NID2Q14112 1375 aa16.65■□□□□ 0.26
SHMT2-235ENST00000557740 POTEB3A0JP26 581 aa16.65■□□□□ 0.26
SHMT2-235ENST00000557740 RPS6KB1P23443 525 aa16.65■□□□□ 0.26
SHMT2-235ENST00000557740 SLC26A2P50443 739 aa16.65■□□□□ 0.26
SHMT2-235ENST00000557740 FAM160B1Q5W0V3 765 aa16.65■□□□□ 0.26
SHMT2-235ENST00000557740 POTEBQ6S5H4 581 aa16.65■□□□□ 0.26
SHMT2-235ENST00000557740 TRAPPC12Q8WVT3 735 aa16.65■□□□□ 0.26
SHMT2-235ENST00000557740 ZBTB10Q96DT7 871 aa16.65■□□□□ 0.26
SHMT2-235ENST00000557740 IL17RAQ96F46 866 aa16.65■□□□□ 0.26
SHMT2-235ENST00000557740 NECAB3Q96P71 396 aaPredicted RBP16.65■□□□□ 0.26
SHMT2-235ENST00000557740 ZMYND12Q9H0C1 365 aa16.65■□□□□ 0.26
SHMT2-235ENST00000557740 TCEAL9Q9UHQ7 104 aa16.65■□□□□ 0.26
SHMT2-235ENST00000557740 TRPV2Q9Y5S1 764 aa16.65■□□□□ 0.26
SHMT2-235ENST00000557740 COL4A6Q14031 1691 aa16.65■□□□□ 0.26
SHMT2-235ENST00000557740 SIP14410 1827 aa16.64■□□□□ 0.25
SHMT2-235ENST00000557740 FAM86B1E9PN63 330 aa16.64■□□□□ 0.25
SHMT2-235ENST00000557740 PRPF3O43395 683 aaKnown RBP16.64■□□□□ 0.25
SHMT2-235ENST00000557740 CCNE2O96020 404 aa16.64■□□□□ 0.25
SHMT2-235ENST00000557740 FAM86B2P0C5J1 330 aa16.64■□□□□ 0.25
SHMT2-235ENST00000557740 GNA11P29992 359 aa16.64■□□□□ 0.25
SHMT2-235ENST00000557740 SETQ01105 290 aaPredicted RBP16.64■□□□□ 0.25
SHMT2-235ENST00000557740 TIGD5Q53EQ6 642 aa16.64■□□□□ 0.25
SHMT2-235ENST00000557740 MIS18BP1Q6P0N0 1132 aa16.64■□□□□ 0.25
SHMT2-235ENST00000557740 TMEM192Q8IY95 271 aa16.64■□□□□ 0.25
SHMT2-235ENST00000557740 FIBCD1Q8N539 461 aa16.64■□□□□ 0.25
SHMT2-235ENST00000557740 CCDC148Q8NFR7 591 aa16.64■□□□□ 0.25
SHMT2-235ENST00000557740 PHKBQ93100 1093 aa16.64■□□□□ 0.25
SHMT2-235ENST00000557740 MRPL38Q96DV4 380 aaKnown RBP16.64■□□□□ 0.25
SHMT2-235ENST00000557740 PCDHA2Q9Y5H9 948 aa16.64■□□□□ 0.25
SHMT2-235ENST00000557740 KAT6AQ92794 2004 aa16.63■□□□□ 0.25
SHMT2-235ENST00000557740 BDP1A6H8Y1 2624 aa16.63■□□□□ 0.25
SHMT2-235ENST00000557740 IPO5O00410 1097 aaKnown RBP16.63■□□□□ 0.25
SHMT2-235ENST00000557740 ATG7O95352 703 aa16.63■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms