RNA–Protein interactions for RNA: ENST00000557713.5

SCFD1-224, Transcript of sec1 family domain containing 1, humanhuman

TSL 4

Gene SCFD1, Length 556 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-224ENST00000557713 RC3H2Q9HBD1 1191 aaKnown RBP18.28■□□□□ 0.52
SCFD1-224ENST00000557713 BRWD1Q9NSI6 2320 aa18.27■□□□□ 0.52
SCFD1-224ENST00000557713 RRN3P2A6NIE6 340 aa18.27■□□□□ 0.52
SCFD1-224ENST00000557713 BMPR1AP36894 532 aa18.27■□□□□ 0.52
SCFD1-224ENST00000557713 PUS10Q3MIT2 529 aaKnown RBP18.27■□□□□ 0.52
SCFD1-224ENST00000557713 GJD3Q8N144 294 aa18.27■□□□□ 0.52
SCFD1-224ENST00000557713 ZNF689Q96CS4 500 aaPredicted RBP18.27■□□□□ 0.52
SCFD1-224ENST00000557713 PABPC5Q96DU9 382 aaKnown RBP18.27■□□□□ 0.52
SCFD1-224ENST00000557713 NSUN3Q9H649 340 aaKnown RBP18.27■□□□□ 0.52
SCFD1-224ENST00000557713 KCNH7Q9NS40 1196 aa18.27■□□□□ 0.52
SCFD1-224ENST00000557713 ARIH1Q9Y4X5 557 aaPredicted RBP18.27■□□□□ 0.52
SCFD1-224ENST00000557713 CDY2AQ9Y6F7 541 aa18.27■□□□□ 0.52
SCFD1-224ENST00000557713 H3BQ06 376 aaPredicted RBP18.26■□□□□ 0.51
SCFD1-224ENST00000557713 INSRRP14616 1297 aa18.26■□□□□ 0.51
SCFD1-224ENST00000557713 MRPS6P82932 125 aaKnown RBP18.26■□□□□ 0.51
SCFD1-224ENST00000557713 HEATR3Q7Z4Q2 680 aa18.26■□□□□ 0.51
SCFD1-224ENST00000557713 ZBTB10Q96DT7 871 aa18.26■□□□□ 0.51
SCFD1-224ENST00000557713 FAM122AQ96E09 287 aa18.26■□□□□ 0.51
SCFD1-224ENST00000557713 MXRA8Q9BRK3 442 aa18.26■□□□□ 0.51
SCFD1-224ENST00000557713 AGO3Q9H9G7 860 aaKnown RBP18.26■□□□□ 0.51
SCFD1-224ENST00000557713 JPH1Q9HDC5 661 aaPredicted RBP18.26■□□□□ 0.51
SCFD1-224ENST00000557713 RALGAPA2Q2PPJ7 1873 aa18.26■□□□□ 0.51
SCFD1-224ENST00000557713 NLRC5Q86WI3 1866 aa18.26■□□□□ 0.51
SCFD1-224ENST00000557713 KAT6AQ92794 2004 aa18.25■□□□□ 0.51
SCFD1-224ENST00000557713 CTNNB1P35222 781 aa18.25■□□□□ 0.51
SCFD1-224ENST00000557713 IGBP1P78318 339 aa18.25■□□□□ 0.51
SCFD1-224ENST00000557713 WWC2Q6AWC2 1192 aa18.25■□□□□ 0.51
SCFD1-224ENST00000557713 TYW1BQ6NUM6 668 aa18.25■□□□□ 0.51
SCFD1-224ENST00000557713 TSHZ1Q6ZSZ6 1077 aa18.25■□□□□ 0.51
SCFD1-224ENST00000557713 RTN4RL1Q86UN2 441 aaPredicted RBP18.25■□□□□ 0.51
SCFD1-224ENST00000557713 MICU3Q86XE3 530 aa18.25■□□□□ 0.51
SCFD1-224ENST00000557713 TEX2Q8IWB9 1127 aa18.25■□□□□ 0.51
SCFD1-224ENST00000557713 CRIPAKQ8N1N5 446 aa18.25■□□□□ 0.51
SCFD1-224ENST00000557713 CYP2W1Q8TAV3 490 aa18.25■□□□□ 0.51
SCFD1-224ENST00000557713 CLP1Q92989 425 aaKnown RBP18.25■□□□□ 0.51
SCFD1-224ENST00000557713 LMAN2LQ9H0V9 348 aa18.25■□□□□ 0.51
SCFD1-224ENST00000557713 RIC8AQ9NPQ8 531 aa18.25■□□□□ 0.51
SCFD1-224ENST00000557713 ANO2Q9NQ90 1003 aa18.25■□□□□ 0.51
SCFD1-224ENST00000557713 SLC9A2Q9UBY0 812 aa18.25■□□□□ 0.51
SCFD1-224ENST00000557713 RWDD3Q9Y3V2 267 aa18.25■□□□□ 0.51
SCFD1-224ENST00000557713 SQORQ9Y6N5 450 aa18.25■□□□□ 0.51
SCFD1-224ENST00000557713 NFASCO94856 1347 aa18.24■□□□□ 0.51
SCFD1-224ENST00000557713 ADGRA3Q8IWK6 1321 aa18.24■□□□□ 0.51
SCFD1-224ENST00000557713 GRM6O15303 877 aa18.24■□□□□ 0.51
SCFD1-224ENST00000557713 DGKIO75912 1065 aa18.24■□□□□ 0.51
SCFD1-224ENST00000557713 RPLP2P05387 115 aaKnown RBP18.24■□□□□ 0.51
SCFD1-224ENST00000557713 ARP10275 920 aa18.24■□□□□ 0.51
SCFD1-224ENST00000557713 CD52P31358 61 aa18.24■□□□□ 0.51
SCFD1-224ENST00000557713 EXOSC10Q01780 885 aaKnown RBP18.24■□□□□ 0.51
SCFD1-224ENST00000557713 FUT2Q10981 343 aa18.24■□□□□ 0.51
SCFD1-224ENST00000557713 PLCB4Q15147 1175 aa18.24■□□□□ 0.51
SCFD1-224ENST00000557713 IER5Q5VY09 327 aa18.24■□□□□ 0.51
SCFD1-224ENST00000557713 APOA5Q6Q788 366 aa18.24■□□□□ 0.51
SCFD1-224ENST00000557713 SYNE3Q6ZMZ3 975 aa18.24■□□□□ 0.51
SCFD1-224ENST00000557713 PLPPR4Q7Z2D5 763 aa18.24■□□□□ 0.51
SCFD1-224ENST00000557713 LINC01599Q8WXQ3 324 aa18.24■□□□□ 0.51
SCFD1-224ENST00000557713 C11orf84Q9BUA3 381 aaPredicted RBP18.24■□□□□ 0.51
SCFD1-224ENST00000557713 AZI2Q9H6S1 392 aa18.24■□□□□ 0.51
SCFD1-224ENST00000557713 CNTNAP5Q8WYK1 1306 aa18.23■□□□□ 0.51
SCFD1-224ENST00000557713 POTEB3A0JP26 581 aa18.23■□□□□ 0.51
SCFD1-224ENST00000557713 FAM86C2PA6NEL3 165 aa18.23■□□□□ 0.51
SCFD1-224ENST00000557713 ATG7O95352 703 aa18.23■□□□□ 0.51
SCFD1-224ENST00000557713 FOSP01100 380 aaPredicted RBP18.23■□□□□ 0.51
SCFD1-224ENST00000557713 LTBRP36941 435 aa18.23■□□□□ 0.51
SCFD1-224ENST00000557713 ACTR2P61160 394 aa18.23■□□□□ 0.51
SCFD1-224ENST00000557713 BTG3Q14201 252 aaPredicted RBP18.23■□□□□ 0.51
SCFD1-224ENST00000557713 CTC1Q2NKJ3 1217 aa18.23■□□□□ 0.51
SCFD1-224ENST00000557713 POTEBQ6S5H4 581 aa18.23■□□□□ 0.51
SCFD1-224ENST00000557713 TNPO1Q92973 898 aaKnown RBP18.23■□□□□ 0.51
SCFD1-224ENST00000557713 NEK1Q96PY6 1258 aa18.23■□□□□ 0.51
SCFD1-224ENST00000557713 FAM49AQ9H0Q0 323 aaPredicted RBP18.23■□□□□ 0.51
SCFD1-224ENST00000557713 RBM28Q9NW13 759 aaKnown RBP18.23■□□□□ 0.51
SCFD1-224ENST00000557713 BRPF3Q9ULD4 1205 aa18.23■□□□□ 0.51
SCFD1-224ENST00000557713 PCDHA2Q9Y5H9 948 aa18.23■□□□□ 0.51
SCFD1-224ENST00000557713 MEIS1O00470 390 aa18.22■□□□□ 0.51
SCFD1-224ENST00000557713 NCK2O43639 380 aa18.22■□□□□ 0.51
SCFD1-224ENST00000557713 SSTR3P32745 418 aaPredicted RBP18.22■□□□□ 0.51
SCFD1-224ENST00000557713 STAT5BP51692 787 aa18.22■□□□□ 0.51
SCFD1-224ENST00000557713 NAPAP54920 295 aa18.22■□□□□ 0.51
SCFD1-224ENST00000557713 ITGB3BPQ13352 177 aaPredicted RBP18.22■□□□□ 0.51
SCFD1-224ENST00000557713 CEP55Q53EZ4 464 aa18.22■□□□□ 0.51
SCFD1-224ENST00000557713 PPP1R18Q6NYC8 613 aa18.22■□□□□ 0.51
SCFD1-224ENST00000557713 TRAPPC12Q8WVT3 735 aa18.22■□□□□ 0.51
SCFD1-224ENST00000557713 PGBD1Q96JS3 809 aa18.22■□□□□ 0.51
SCFD1-224ENST00000557713 SDF4Q9BRK5 362 aa18.22■□□□□ 0.51
SCFD1-224ENST00000557713 AGO4Q9HCK5 861 aaKnown RBP18.22■□□□□ 0.51
SCFD1-224ENST00000557713 CLDND1Q9NY35 253 aa18.22■□□□□ 0.51
SCFD1-224ENST00000557713 TRPC6Q9Y210 931 aa18.22■□□□□ 0.51
SCFD1-224ENST00000557713 HCN4Q9Y3Q4 1203 aa18.22■□□□□ 0.51
SCFD1-224ENST00000557713 TRPV2Q9Y5S1 764 aa18.22■□□□□ 0.51
SCFD1-224ENST00000557713 V9GY48 417 aaPredicted RBP18.22■□□□□ 0.51
SCFD1-224ENST00000557713 IGKV6D-21A0A0A0MT36 114 aa18.21■□□□□ 0.51
SCFD1-224ENST00000557713 STXBP3O00186 592 aa18.21■□□□□ 0.51
SCFD1-224ENST00000557713 CLK2P49760 499 aaKnown RBP18.21■□□□□ 0.51
SCFD1-224ENST00000557713 TMEM62Q0P6H9 643 aa18.21■□□□□ 0.51
SCFD1-224ENST00000557713 HYAL1Q12794 435 aa18.21■□□□□ 0.51
SCFD1-224ENST00000557713 CAMK1Q14012 370 aa18.21■□□□□ 0.51
SCFD1-224ENST00000557713 TSGA10IPQ3SY00 556 aa18.21■□□□□ 0.51
SCFD1-224ENST00000557713 RNF20Q5VTR2 975 aa18.21■□□□□ 0.51
SCFD1-224ENST00000557713 EP400NLQ6ZTU2 488 aa18.21■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms