RNA–Protein interactions for RNA: ENST00000557466.1

VIPAS39-210, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

TSL 4

Gene VIPAS39, Length 533 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-210ENST00000557466 SMIM10L2AP0DMW4 78 aa16.73■□□□□ 0.27
VIPAS39-210ENST00000557466 SMIM10L2BP0DMW5 78 aa16.73■□□□□ 0.27
VIPAS39-210ENST00000557466 ZSCAN22P10073 491 aaPredicted RBP16.73■□□□□ 0.27
VIPAS39-210ENST00000557466 STAT5BP51692 787 aa16.73■□□□□ 0.27
VIPAS39-210ENST00000557466 PTPN11Q06124 597 aaPredicted RBP16.73■□□□□ 0.27
VIPAS39-210ENST00000557466 PTGDRQ13258 359 aa16.73■□□□□ 0.27
VIPAS39-210ENST00000557466 UGCGQ16739 394 aa16.73■□□□□ 0.27
VIPAS39-210ENST00000557466 FAM160B1Q5W0V3 765 aa16.73■□□□□ 0.27
VIPAS39-210ENST00000557466 NCAPH2Q6IBW4 605 aa16.73■□□□□ 0.27
VIPAS39-210ENST00000557466 SWSAP1Q6NVH7 229 aa16.73■□□□□ 0.27
VIPAS39-210ENST00000557466 C7orf31Q8N865 590 aa16.73■□□□□ 0.27
VIPAS39-210ENST00000557466 RDM1Q8NG50 284 aa16.73■□□□□ 0.27
VIPAS39-210ENST00000557466 SEZ6LQ9BYH1 1024 aa16.73■□□□□ 0.27
VIPAS39-210ENST00000557466 RNPEPQ9H4A4 650 aa16.73■□□□□ 0.27
VIPAS39-210ENST00000557466 TTC12Q9H892 705 aaPredicted RBP16.73■□□□□ 0.27
VIPAS39-210ENST00000557466 GABBR1Q9UBS5 961 aa16.73■□□□□ 0.27
VIPAS39-210ENST00000557466 GTF2IRD1Q9UHL9 959 aa16.73■□□□□ 0.27
VIPAS39-210ENST00000557466 PCDHA12Q9UN75 941 aa16.73■□□□□ 0.27
VIPAS39-210ENST00000557466 POTEMA6NI47 508 aa16.72■□□□□ 0.27
VIPAS39-210ENST00000557466 F13A1P00488 732 aa16.72■□□□□ 0.27
VIPAS39-210ENST00000557466 CD4P01730 458 aa16.72■□□□□ 0.27
VIPAS39-210ENST00000557466 PDIA4P13667 645 aaKnown RBP16.72■□□□□ 0.27
VIPAS39-210ENST00000557466 ANP32AP39687 249 aaKnown RBP16.72■□□□□ 0.27
VIPAS39-210ENST00000557466 ATP2C1P98194 919 aaPredicted RBP16.72■□□□□ 0.27
VIPAS39-210ENST00000557466 HIC1Q14526 733 aa16.72■□□□□ 0.27
VIPAS39-210ENST00000557466 PLCB4Q15147 1175 aa16.72■□□□□ 0.27
VIPAS39-210ENST00000557466 GDF6Q6KF10 455 aaPredicted RBP16.72■□□□□ 0.27
VIPAS39-210ENST00000557466 PDXDC2PQ6P474 469 aa16.72■□□□□ 0.27
VIPAS39-210ENST00000557466 PLPPR4Q7Z2D5 763 aa16.72■□□□□ 0.27
VIPAS39-210ENST00000557466 TOX2Q96NM4 488 aa16.72■□□□□ 0.27
VIPAS39-210ENST00000557466 FTOQ9C0B1 505 aaKnown RBP eCLIP16.72■□□□□ 0.27
VIPAS39-210ENST00000557466 TRPV6Q9H1D0 765 aa16.72■□□□□ 0.27
VIPAS39-210ENST00000557466 ZSCAN16Q9H4T2 348 aaPredicted RBP16.72■□□□□ 0.27
VIPAS39-210ENST00000557466 PDLIM7Q9NR12 457 aa16.72■□□□□ 0.27
VIPAS39-210ENST00000557466 TRMT13Q9NUP7 481 aaKnown RBP16.72■□□□□ 0.27
VIPAS39-210ENST00000557466 MAFBQ9Y5Q3 323 aaPredicted RBP16.72■□□□□ 0.27
VIPAS39-210ENST00000557466 DCDC2CA8MYV0 355 aa16.71■□□□□ 0.27
VIPAS39-210ENST00000557466 TLR3O15455 904 aaKnown RBP16.71■□□□□ 0.27
VIPAS39-210ENST00000557466 CLTBP09497 229 aa16.71■□□□□ 0.27
VIPAS39-210ENST00000557466 ATP4AP20648 1035 aa16.71■□□□□ 0.27
VIPAS39-210ENST00000557466 FAAP100Q0VG06 881 aa16.71■□□□□ 0.27
VIPAS39-210ENST00000557466 BANK1Q8NDB2 785 aa16.71■□□□□ 0.27
VIPAS39-210ENST00000557466 PCDH10Q9P2E7 1040 aa16.71■□□□□ 0.27
VIPAS39-210ENST00000557466 LAD1O00515 517 aa16.7■□□□□ 0.26
VIPAS39-210ENST00000557466 ZNF862O60290 1169 aa16.7■□□□□ 0.26
VIPAS39-210ENST00000557466 HOXC8P31273 242 aa16.7■□□□□ 0.26
VIPAS39-210ENST00000557466 SLC26A2P50443 739 aa16.7■□□□□ 0.26
VIPAS39-210ENST00000557466 ZNF200P98182 395 aaPredicted RBP16.7■□□□□ 0.26
VIPAS39-210ENST00000557466 PPFIA1Q13136 1202 aa16.7■□□□□ 0.26
VIPAS39-210ENST00000557466 EPHA7Q15375 998 aa16.7■□□□□ 0.26
VIPAS39-210ENST00000557466 SF3A1Q15459 793 aaKnown RBP16.7■□□□□ 0.26
VIPAS39-210ENST00000557466 SH3RF1Q7Z6J0 888 aa16.7■□□□□ 0.26
VIPAS39-210ENST00000557466 ATP8B4Q8TF62 1192 aa16.7■□□□□ 0.26
VIPAS39-210ENST00000557466 LMBR1Q8WVP7 490 aa16.7■□□□□ 0.26
VIPAS39-210ENST00000557466 CTAGE1Q96RT6 745 aa16.7■□□□□ 0.26
VIPAS39-210ENST00000557466 PRDM5Q9NQX1 630 aaPredicted RBP16.7■□□□□ 0.26
VIPAS39-210ENST00000557466 SETD4Q9NVD3 440 aa16.7■□□□□ 0.26
VIPAS39-210ENST00000557466 ZMYND8Q9ULU4 1186 aaPredicted RBP16.7■□□□□ 0.26
VIPAS39-210ENST00000557466 TRPC6Q9Y210 931 aa16.7■□□□□ 0.26
VIPAS39-210ENST00000557466 CLIC4Q9Y696 253 aa16.7■□□□□ 0.26
VIPAS39-210ENST00000557466 POTEB3A0JP26 581 aa16.69■□□□□ 0.26
VIPAS39-210ENST00000557466 C17orf102A2RUQ5 167 aa16.69■□□□□ 0.26
VIPAS39-210ENST00000557466 BRD1O95696 1058 aa16.69■□□□□ 0.26
VIPAS39-210ENST00000557466 SYN1P17600 705 aa16.69■□□□□ 0.26
VIPAS39-210ENST00000557466 PRPHP41219 470 aa16.69■□□□□ 0.26
VIPAS39-210ENST00000557466 TECP42680 631 aa16.69■□□□□ 0.26
VIPAS39-210ENST00000557466 FXR2P51116 673 aaKnown RBP eCLIP16.69■□□□□ 0.26
VIPAS39-210ENST00000557466 PRKCEQ02156 737 aa16.69■□□□□ 0.26
VIPAS39-210ENST00000557466 GRIK4Q16099 956 aa16.69■□□□□ 0.26
VIPAS39-210ENST00000557466 IL17AQ16552 155 aa16.69■□□□□ 0.26
VIPAS39-210ENST00000557466 PTGISQ16647 500 aa16.69■□□□□ 0.26
VIPAS39-210ENST00000557466 TMEM266Q2M3C6 531 aa16.69■□□□□ 0.26
VIPAS39-210ENST00000557466 POTEBQ6S5H4 581 aa16.69■□□□□ 0.26
VIPAS39-210ENST00000557466 CKAP2LQ8IYA6 745 aa16.69■□□□□ 0.26
VIPAS39-210ENST00000557466 ATP6V0A1Q93050 837 aa16.69■□□□□ 0.26
VIPAS39-210ENST00000557466 DYDC2Q96IM9 177 aa16.69■□□□□ 0.26
VIPAS39-210ENST00000557466 USP28Q96RU2 1077 aa16.69■□□□□ 0.26
VIPAS39-210ENST00000557466 TBX21Q9UL17 535 aa16.69■□□□□ 0.26
VIPAS39-210ENST00000557466 ZDHHC9Q9Y397 364 aa16.69■□□□□ 0.26
VIPAS39-210ENST00000557466 SIP14410 1827 aa16.68■□□□□ 0.26
VIPAS39-210ENST00000557466 MKI67P46013 3256 aaKnown RBP16.68■□□□□ 0.26
VIPAS39-210ENST00000557466 TRIM43BA6NCK2 446 aa16.68■□□□□ 0.26
VIPAS39-210ENST00000557466 OATP04181 439 aa16.68■□□□□ 0.26
VIPAS39-210ENST00000557466 CYP2C9P11712 490 aa16.68■□□□□ 0.26
VIPAS39-210ENST00000557466 INSRRP14616 1297 aa16.68■□□□□ 0.26
VIPAS39-210ENST00000557466 ADAM17P78536 824 aa16.68■□□□□ 0.26
VIPAS39-210ENST00000557466 CYP4A11Q02928 519 aa16.68■□□□□ 0.26
VIPAS39-210ENST00000557466 PTPAQ15257 358 aa16.68■□□□□ 0.26
VIPAS39-210ENST00000557466 TRMT1LQ7Z2T5 733 aaKnown RBP16.68■□□□□ 0.26
VIPAS39-210ENST00000557466 TRAPPC12Q8WVT3 735 aa16.68■□□□□ 0.26
VIPAS39-210ENST00000557466 TRIM43Q96BQ3 446 aaPredicted RBP16.68■□□□□ 0.26
VIPAS39-210ENST00000557466 EIF2AK1Q9BQI3 630 aaKnown RBP16.68■□□□□ 0.26
VIPAS39-210ENST00000557466 LXNQ9BS40 222 aa16.68■□□□□ 0.26
VIPAS39-210ENST00000557466 TSHZ2Q9NRE2 1034 aa16.68■□□□□ 0.26
VIPAS39-210ENST00000557466 TMEM39AQ9NV64 488 aa16.68■□□□□ 0.26
VIPAS39-210ENST00000557466 RGL1Q9NZL6 768 aa16.68■□□□□ 0.26
VIPAS39-210ENST00000557466 WRAP73Q9P2S5 460 aaPredicted RBP16.68■□□□□ 0.26
VIPAS39-210ENST00000557466 NOD1Q9Y239 953 aa16.68■□□□□ 0.26
VIPAS39-210ENST00000557466 NR2E3Q9Y5X4 410 aa16.68■□□□□ 0.26
VIPAS39-210ENST00000557466 NRCAMQ92823 1304 aa16.68■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms