RNA–Protein interactions for RNA: ENST00000557342.5

SLIRP-209, Transcript of SRA stem-loop interacting RNA binding protein, humanhuman

TSL 1 (best) BASIC

Gene SLIRP, Length 408 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SLIRP-209ENST00000557342 SHHQ15465 462 aa14.12□□□□□ -0.15
SLIRP-209ENST00000557342 LRIT3Q3SXY7 679 aa14.12□□□□□ -0.15
SLIRP-209ENST00000557342 PSRC1Q6PGN9 363 aaPredicted RBP14.12□□□□□ -0.15
SLIRP-209ENST00000557342 SERINC5Q86VE9 423 aa14.12□□□□□ -0.15
SLIRP-209ENST00000557342 FBXO18Q8NFZ0 1043 aa14.12□□□□□ -0.15
SLIRP-209ENST00000557342 FAM20AQ96MK3 541 aa14.12□□□□□ -0.15
SLIRP-209ENST00000557342 UIMC1Q96RL1 719 aa14.12□□□□□ -0.15
SLIRP-209ENST00000557342 CTAGE1Q96RT6 745 aa14.12□□□□□ -0.15
SLIRP-209ENST00000557342 PCYT2Q99447 389 aa14.12□□□□□ -0.15
SLIRP-209ENST00000557342 WNT8AQ9H1J5 351 aa14.12□□□□□ -0.15
SLIRP-209ENST00000557342 ZNF302Q9NR11 478 aa14.12□□□□□ -0.15
SLIRP-209ENST00000557342 SAMM50Q9Y512 469 aa14.12□□□□□ -0.15
SLIRP-209ENST00000557342 ZSCAN21Q9Y5A6 473 aaPredicted RBP14.12□□□□□ -0.15
SLIRP-209ENST00000557342 PCDHA10Q9Y5I2 948 aa14.12□□□□□ -0.15
SLIRP-209ENST00000557342 RRN3P2A6NIE6 340 aa14.11□□□□□ -0.15
SLIRP-209ENST00000557342 WDR64B1ANS9 1081 aa14.11□□□□□ -0.15
SLIRP-209ENST00000557342 TBX3O15119 743 aa14.11□□□□□ -0.15
SLIRP-209ENST00000557342 IQCF3P0C7M6 154 aa14.11□□□□□ -0.15
SLIRP-209ENST00000557342 SELPP16109 830 aa14.11□□□□□ -0.15
SLIRP-209ENST00000557342 JAK3P52333 1124 aa14.11□□□□□ -0.15
SLIRP-209ENST00000557342 ZNF200P98182 395 aaPredicted RBP14.11□□□□□ -0.15
SLIRP-209ENST00000557342 GUCY1B3Q02153 619 aa14.11□□□□□ -0.15
SLIRP-209ENST00000557342 PPFIA1Q13136 1202 aa14.11□□□□□ -0.15
SLIRP-209ENST00000557342 EARS2Q5JPH6 523 aaKnown RBP14.11□□□□□ -0.15
SLIRP-209ENST00000557342 RDM1Q8NG50 284 aa14.11□□□□□ -0.15
SLIRP-209ENST00000557342 ETNPPLQ8TBG4 499 aa14.11□□□□□ -0.15
SLIRP-209ENST00000557342 LMBR1Q8WVP7 490 aa14.11□□□□□ -0.15
SLIRP-209ENST00000557342 SCLYQ96I15 445 aa14.11□□□□□ -0.15
SLIRP-209ENST00000557342 MTIF3Q9H2K0 278 aaKnown RBP14.11□□□□□ -0.15
SLIRP-209ENST00000557342 FOXP1Q9H334 677 aaPredicted RBP14.11□□□□□ -0.15
SLIRP-209ENST00000557342 SETD4Q9NVD3 440 aa14.11□□□□□ -0.15
SLIRP-209ENST00000557342 TRPC6Q9Y210 931 aa14.11□□□□□ -0.15
SLIRP-209ENST00000557342 POTEB3A0JP26 581 aa14.1□□□□□ -0.15
SLIRP-209ENST00000557342 TREHO43280 583 aa14.1□□□□□ -0.15
SLIRP-209ENST00000557342 SLC37A4O43826 429 aa14.1□□□□□ -0.15
SLIRP-209ENST00000557342 MARCH6O60337 910 aa14.1□□□□□ -0.15
SLIRP-209ENST00000557342 CAND2O75155 1236 aa14.1□□□□□ -0.15
SLIRP-209ENST00000557342 PSMD10O75832 226 aa14.1□□□□□ -0.15
SLIRP-209ENST00000557342 BAG4O95429 457 aaKnown RBP14.1□□□□□ -0.15
SLIRP-209ENST00000557342 FGBP02675 491 aa14.1□□□□□ -0.15
SLIRP-209ENST00000557342 RPLP2P05387 115 aaKnown RBP14.1□□□□□ -0.15
SLIRP-209ENST00000557342 CKBP12277 381 aa14.1□□□□□ -0.15
SLIRP-209ENST00000557342 EPHB4P54760 987 aa14.1□□□□□ -0.15
SLIRP-209ENST00000557342 ADAM17P78536 824 aa14.1□□□□□ -0.15
SLIRP-209ENST00000557342 GNL2Q13823 731 aaKnown RBP14.1□□□□□ -0.15
SLIRP-209ENST00000557342 HIC1Q14526 733 aa14.1□□□□□ -0.15
SLIRP-209ENST00000557342 PLCB4Q15147 1175 aa14.1□□□□□ -0.15
SLIRP-209ENST00000557342 GRIK4Q16099 956 aa14.1□□□□□ -0.15
SLIRP-209ENST00000557342 TMEM240Q5SV17 173 aa14.1□□□□□ -0.15
SLIRP-209ENST00000557342 C9orf50Q5SZB4 431 aa14.1□□□□□ -0.15
SLIRP-209ENST00000557342 SWSAP1Q6NVH7 229 aa14.1□□□□□ -0.15
SLIRP-209ENST00000557342 TAF2Q6P1X5 1199 aa14.1□□□□□ -0.15
SLIRP-209ENST00000557342 PDXDC2PQ6P474 469 aa14.1□□□□□ -0.15
SLIRP-209ENST00000557342 POTEBQ6S5H4 581 aa14.1□□□□□ -0.15
SLIRP-209ENST00000557342 LRRC8DQ7L1W4 858 aa14.1□□□□□ -0.15
SLIRP-209ENST00000557342 CCDC60Q8IWA6 550 aaPredicted RBP14.1□□□□□ -0.15
SLIRP-209ENST00000557342 DHX38Q92620 1227 aaKnown RBP14.1□□□□□ -0.15
SLIRP-209ENST00000557342 RNPC3Q96LT9 517 aaKnown RBP14.1□□□□□ -0.15
SLIRP-209ENST00000557342 BUD13Q9BRD0 619 aaKnown RBP eCLIP14.1□□□□□ -0.156e-7■■■□□ 18.5
SLIRP-209ENST00000557342 DISC1Q9NRI5 854 aa14.1□□□□□ -0.15
SLIRP-209ENST00000557342 EVPLQ92817 2033 aa14.1□□□□□ -0.15
SLIRP-209ENST00000557342 HBP1O60381 514 aa14.09□□□□□ -0.15
SLIRP-209ENST00000557342 ACRP10323 421 aa14.09□□□□□ -0.15
SLIRP-209ENST00000557342 INSRRP14616 1297 aa14.09□□□□□ -0.15
SLIRP-209ENST00000557342 THPOP40225 353 aa14.09□□□□□ -0.15
SLIRP-209ENST00000557342 FXR1P51114 621 aaKnown RBP eCLIP14.09□□□□□ -0.15
SLIRP-209ENST00000557342 TRIM71Q2Q1W2 868 aaKnown RBP14.09□□□□□ -0.15
SLIRP-209ENST00000557342 ZNF365Q70YC5 407 aa14.09□□□□□ -0.15
SLIRP-209ENST00000557342 MIER3Q7Z3K6 550 aa14.09□□□□□ -0.15
SLIRP-209ENST00000557342 CKAP2LQ8IYA6 745 aa14.09□□□□□ -0.15
SLIRP-209ENST00000557342 SLFN12Q8IYM2 578 aa14.09□□□□□ -0.15
SLIRP-209ENST00000557342 ATP8B4Q8TF62 1192 aa14.09□□□□□ -0.15
SLIRP-209ENST00000557342 UNC45AQ9H3U1 944 aa14.09□□□□□ -0.15
SLIRP-209ENST00000557342 KCNMB3Q9NPA1 279 aa14.09□□□□□ -0.15
SLIRP-209ENST00000557342 GABBR1Q9UBS5 961 aa14.09□□□□□ -0.15
SLIRP-209ENST00000557342 TUBE1Q9UJT0 475 aa14.09□□□□□ -0.15
SLIRP-209ENST00000557342 SMC3Q9UQE7 1217 aa14.09□□□□□ -0.15
SLIRP-209ENST00000557342 MAFBQ9Y5Q3 323 aaPredicted RBP14.09□□□□□ -0.15
SLIRP-209ENST00000557342 COL1A2P08123 1366 aa14.09□□□□□ -0.15
SLIRP-209ENST00000557342 LOXHD1Q8IVV2 1947 aa14.08□□□□□ -0.16
SLIRP-209ENST00000557342 MBLAC1A4D2B0 266 aaPredicted RBP14.08□□□□□ -0.16
SLIRP-209ENST00000557342 FAM205CA6NFA0 338 aa14.08□□□□□ -0.16
SLIRP-209ENST00000557342 CHMP2AO43633 222 aa14.08□□□□□ -0.16
SLIRP-209ENST00000557342 ACTN1P12814 892 aa14.08□□□□□ -0.16
SLIRP-209ENST00000557342 GJB2P29033 226 aa14.08□□□□□ -0.16
SLIRP-209ENST00000557342 ZNF618Q5T7W0 954 aa14.08□□□□□ -0.16
SLIRP-209ENST00000557342 C16orf59Q7L2K0 433 aa14.08□□□□□ -0.16
SLIRP-209ENST00000557342 DEFB128Q7Z7B8 93 aa14.08□□□□□ -0.16
SLIRP-209ENST00000557342 RSPH3Q86UC2 560 aa14.08□□□□□ -0.16
SLIRP-209ENST00000557342 BBXQ8WY36 941 aaPredicted RBP14.08□□□□□ -0.16
SLIRP-209ENST00000557342 HERVK_113Q902F9 699 aa14.08□□□□□ -0.16
SLIRP-209ENST00000557342 FAM167AQ96KS9 214 aa14.08□□□□□ -0.16
SLIRP-209ENST00000557342 CEP131Q9UPN4 1083 aa14.08□□□□□ -0.16
SLIRP-209ENST00000557342 IGSF9BQ9UPX0 1349 aa14.08□□□□□ -0.16
SLIRP-209ENST00000557342 TRIOBPQ9H2D6 2365 aa14.07□□□□□ -0.16
SLIRP-209ENST00000557342 RSPH10B2B2RC85 870 aa14.07□□□□□ -0.16
SLIRP-209ENST00000557342 RSPH10BP0C881 870 aa14.07□□□□□ -0.16
SLIRP-209ENST00000557342 IGBP1P78318 339 aa14.07□□□□□ -0.16
SLIRP-209ENST00000557342 PPP2R5CQ13362 524 aa14.07□□□□□ -0.16
SLIRP-209ENST00000557342 ORC2Q13416 577 aaPredicted RBP14.07□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms