RNA–Protein interactions for RNA: ENST00000557307.1

SYNE2-227, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 4

Gene SYNE2, Length 526 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-227ENST00000557307 METAP2P50579 478 aaKnown RBP eCLIP12.48□□□□□ -0.41
SYNE2-227ENST00000557307 HTRA4P83105 476 aaPredicted RBP12.48□□□□□ -0.41
SYNE2-227ENST00000557307 LPIN1Q14693 890 aa12.48□□□□□ -0.41
SYNE2-227ENST00000557307 NTRK3Q16288 839 aa12.48□□□□□ -0.41
SYNE2-227ENST00000557307 PFKFB3Q16875 520 aaPredicted RBP12.48□□□□□ -0.41
SYNE2-227ENST00000557307 FAM26DQ5JW98 314 aa12.48□□□□□ -0.41
SYNE2-227ENST00000557307 DNAJB3Q8WWF6 145 aa12.48□□□□□ -0.41
SYNE2-227ENST00000557307 SEPT1Q8WYJ6 367 aa12.48□□□□□ -0.41
SYNE2-227ENST00000557307 ASB2Q96Q27 587 aa12.48□□□□□ -0.41
SYNE2-227ENST00000557307 RAD9AQ99638 391 aa12.48□□□□□ -0.41
SYNE2-227ENST00000557307 AGXT2Q9BYV1 514 aa12.48□□□□□ -0.41
SYNE2-227ENST00000557307 SUGCTQ9HAC7 445 aa12.48□□□□□ -0.41
SYNE2-227ENST00000557307 AGO4Q9HCK5 861 aaKnown RBP12.48□□□□□ -0.41
SYNE2-227ENST00000557307 JPH1Q9HDC5 661 aaPredicted RBP12.48□□□□□ -0.41
SYNE2-227ENST00000557307 SLC9A2Q9UBY0 812 aa12.48□□□□□ -0.41
SYNE2-227ENST00000557307 TTC3P53804 2025 aa12.47□□□□□ -0.41
SYNE2-227ENST00000557307 C5orf42Q9H799 3197 aa12.47□□□□□ -0.41
SYNE2-227ENST00000557307 NRCAMQ92823 1304 aa12.47□□□□□ -0.41
SYNE2-227ENST00000557307 MBLAC1A4D2B0 266 aaPredicted RBP12.47□□□□□ -0.41
SYNE2-227ENST00000557307 KIF28PB7ZC32 967 aa12.47□□□□□ -0.41
SYNE2-227ENST00000557307 UPP2O95045 317 aa12.47□□□□□ -0.41
SYNE2-227ENST00000557307 SCG2P13521 617 aa12.47□□□□□ -0.41
SYNE2-227ENST00000557307 INSRRP14616 1297 aa12.47□□□□□ -0.41
SYNE2-227ENST00000557307 ACTR2P61160 394 aa12.47□□□□□ -0.41
SYNE2-227ENST00000557307 ERVK-21P61565 698 aa12.47□□□□□ -0.41
SYNE2-227ENST00000557307 TMEM62Q0P6H9 643 aa12.47□□□□□ -0.41
SYNE2-227ENST00000557307 TOB2Q14106 344 aaPredicted RBP12.47□□□□□ -0.41
SYNE2-227ENST00000557307 KRT32Q14532 448 aa12.47□□□□□ -0.41
SYNE2-227ENST00000557307 PLCB4Q15147 1175 aa12.47□□□□□ -0.41
SYNE2-227ENST00000557307 SP7Q8TDD2 431 aaPredicted RBP12.47□□□□□ -0.41
SYNE2-227ENST00000557307 ADAMTS19Q8TE59 1207 aa12.47□□□□□ -0.41
SYNE2-227ENST00000557307 GLG1Q92896 1179 aa12.47□□□□□ -0.41
SYNE2-227ENST00000557307 AGO3Q9H9G7 860 aaKnown RBP12.47□□□□□ -0.41
SYNE2-227ENST00000557307 TUBE1Q9UJT0 475 aa12.47□□□□□ -0.41
SYNE2-227ENST00000557307 NFASCO94856 1347 aa12.46□□□□□ -0.41
SYNE2-227ENST00000557307 MEIS1O00470 390 aa12.46□□□□□ -0.41
SYNE2-227ENST00000557307 DHX15O43143 795 aaKnown RBP12.46□□□□□ -0.41
SYNE2-227ENST00000557307 LINC00271P0C7V0 271 aa12.46□□□□□ -0.41
SYNE2-227ENST00000557307 CCT2P78371 535 aaKnown RBP12.46□□□□□ -0.41
SYNE2-227ENST00000557307 SKIV2LQ15477 1246 aaKnown RBP12.46□□□□□ -0.41
SYNE2-227ENST00000557307 CEP55Q53EZ4 464 aa12.46□□□□□ -0.41
SYNE2-227ENST00000557307 BLOC1S2Q6QNY1 142 aa12.46□□□□□ -0.41
SYNE2-227ENST00000557307 CCDC60Q8IWA6 550 aaPredicted RBP12.46□□□□□ -0.41
SYNE2-227ENST00000557307 GIMAP8Q8ND71 665 aaPredicted RBP12.46□□□□□ -0.41
SYNE2-227ENST00000557307 ATXN2LQ8WWM7 1075 aaKnown RBP12.46□□□□□ -0.41
SYNE2-227ENST00000557307 CDHR1Q96JP9 859 aa12.46□□□□□ -0.41
SYNE2-227ENST00000557307 IFIH1Q9BYX4 1025 aaKnown RBP12.46□□□□□ -0.41
SYNE2-227ENST00000557307 FAM49AQ9H0Q0 323 aaPredicted RBP12.46□□□□□ -0.41
SYNE2-227ENST00000557307 EHMT1Q9H9B1 1298 aa12.46□□□□□ -0.41
SYNE2-227ENST00000557307 ERAP1Q9NZ08 941 aa12.46□□□□□ -0.41
SYNE2-227ENST00000557307 CDY2AQ9Y6F7 541 aa12.46□□□□□ -0.41
SYNE2-227ENST00000557307 CAND2O75155 1236 aa12.45□□□□□ -0.42
SYNE2-227ENST00000557307 AMHP03971 560 aa12.45□□□□□ -0.42
SYNE2-227ENST00000557307 BMP1P13497 986 aa12.45□□□□□ -0.42
SYNE2-227ENST00000557307 ATP4AP20648 1035 aa12.45□□□□□ -0.42
SYNE2-227ENST00000557307 RCAN1P53805 252 aa12.45□□□□□ -0.42
SYNE2-227ENST00000557307 MRPS5P82675 430 aaKnown RBP12.45□□□□□ -0.42
SYNE2-227ENST00000557307 AP3B2Q13367 1082 aa12.45□□□□□ -0.42
SYNE2-227ENST00000557307 FBXO47Q5MNV8 452 aa12.45□□□□□ -0.42
SYNE2-227ENST00000557307 SEPT8Q92599 483 aa12.45□□□□□ -0.42
SYNE2-227ENST00000557307 GJA10Q969M2 543 aa12.45□□□□□ -0.42
SYNE2-227ENST00000557307 TOP1MTQ969P6 601 aa12.45□□□□□ -0.42
SYNE2-227ENST00000557307 TGS1Q96RS0 853 aaKnown RBP12.45□□□□□ -0.42
SYNE2-227ENST00000557307 SMARCAD1Q9H4L7 1026 aa12.45□□□□□ -0.42
SYNE2-227ENST00000557307 RC3H2Q9HBD1 1191 aaKnown RBP12.45□□□□□ -0.42
SYNE2-227ENST00000557307 VPS54Q9P1Q0 977 aa12.45□□□□□ -0.42
SYNE2-227ENST00000557307 ARID2Q68CP9 1835 aa12.44□□□□□ -0.42
SYNE2-227ENST00000557307 IGKV6D-21A0A0A0MT36 114 aa12.44□□□□□ -0.42
SYNE2-227ENST00000557307 ZBTB42B2RXF5 422 aa12.44□□□□□ -0.42
SYNE2-227ENST00000557307 hCG_1984214I3L0E3 225 aa12.44□□□□□ -0.42
SYNE2-227ENST00000557307 PRPF3O43395 683 aaKnown RBP12.44□□□□□ -0.42
SYNE2-227ENST00000557307 GTPBP6O43824 516 aaPredicted RBP12.44□□□□□ -0.42
SYNE2-227ENST00000557307 EFCAB14O75071 495 aa12.44□□□□□ -0.42
SYNE2-227ENST00000557307 ATG7O95352 703 aa12.44□□□□□ -0.42
SYNE2-227ENST00000557307 HMGB1P09429 215 aaKnown RBP12.44□□□□□ -0.42
SYNE2-227ENST00000557307 GNAT1P11488 350 aa12.44□□□□□ -0.42
SYNE2-227ENST00000557307 PDIA3P30101 505 aaKnown RBP12.44□□□□□ -0.42
SYNE2-227ENST00000557307 CD52P31358 61 aa12.44□□□□□ -0.42
SYNE2-227ENST00000557307 MRPS6P82932 125 aaKnown RBP12.44□□□□□ -0.42
SYNE2-227ENST00000557307 FGD1P98174 961 aa12.44□□□□□ -0.42
SYNE2-227ENST00000557307 ABHD15Q6UXT9 468 aa12.44□□□□□ -0.42
SYNE2-227ENST00000557307 RPAINQ86UA6 219 aa12.44□□□□□ -0.42
SYNE2-227ENST00000557307 RTN4RL1Q86UN2 441 aaPredicted RBP12.44□□□□□ -0.42
SYNE2-227ENST00000557307 PLA2G4DQ86XP0 818 aa12.44□□□□□ -0.42
SYNE2-227ENST00000557307 ZNF713Q8N859 430 aaPredicted RBP12.44□□□□□ -0.42
SYNE2-227ENST00000557307 LENG9Q96B70 501 aa12.44□□□□□ -0.42
SYNE2-227ENST00000557307 AIFM3Q96NN9 605 aa12.44□□□□□ -0.42
SYNE2-227ENST00000557307 SLC26A6Q9BXS9 759 aa12.44□□□□□ -0.42
SYNE2-227ENST00000557307 UPF3BQ9BZI7 483 aaKnown RBP12.44□□□□□ -0.42
SYNE2-227ENST00000557307 ZMYND12Q9H0C1 365 aa12.44□□□□□ -0.42
SYNE2-227ENST00000557307 CDHR5Q9HBB8 845 aa12.44□□□□□ -0.42
SYNE2-227ENST00000557307 TRPC6Q9Y210 931 aa12.44□□□□□ -0.42
SYNE2-227ENST00000557307 ESYT2A0FGR8 921 aa12.43□□□□□ -0.42
SYNE2-227ENST00000557307 TNFRSF10AO00220 468 aa12.43□□□□□ -0.42
SYNE2-227ENST00000557307 FOSP01100 380 aaPredicted RBP12.43□□□□□ -0.42
SYNE2-227ENST00000557307 GATMP50440 423 aa12.43□□□□□ -0.42
SYNE2-227ENST00000557307 STAT5BP51692 787 aa12.43□□□□□ -0.42
SYNE2-227ENST00000557307 EPC2Q52LR7 807 aa12.43□□□□□ -0.42
SYNE2-227ENST00000557307 TAF2Q6P1X5 1199 aa12.43□□□□□ -0.42
SYNE2-227ENST00000557307 FBXL16Q8N461 479 aa12.43□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms