RNA–Protein interactions for RNA: ENST00000556956.1

SLIRP-208, Transcript of SRA stem-loop interacting RNA binding protein, humanhuman

TSL 2

Gene SLIRP, Length 450 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SLIRP-208ENST00000556956 CALCOCO1Q9P1Z2 691 aa3.39□□□□□ -1.87
SLIRP-208ENST00000556956 PPT2Q9UMR5 302 aa3.39□□□□□ -1.87
SLIRP-208ENST00000556956 CCDC9Q9Y3X0 531 aaKnown RBP3.39□□□□□ -1.87
SLIRP-208ENST00000556956 ZSCAN21Q9Y5A6 473 aaPredicted RBP3.39□□□□□ -1.87
SLIRP-208ENST00000556956 MORC2Q9Y6X9 1032 aaPredicted RBP3.39□□□□□ -1.87
SLIRP-208ENST00000556956 KIF13AQ9H1H9 1805 aa3.39□□□□□ -1.87
SLIRP-208ENST00000556956 KDM5AP29375 1690 aaKnown RBP3.39□□□□□ -1.87
SLIRP-208ENST00000556956 ABCC1P33527 1531 aa3.39□□□□□ -1.87
SLIRP-208ENST00000556956 SYCP2Q9BX26 1530 aa3.39□□□□□ -1.87
SLIRP-208ENST00000556956 INO80Q9ULG1 1556 aaPredicted RBP3.38□□□□□ -1.87
SLIRP-208ENST00000556956 PTCH1Q13635 1447 aa3.38□□□□□ -1.87
SLIRP-208ENST00000556956 DEPDC5O75140 1603 aa3.38□□□□□ -1.87
SLIRP-208ENST00000556956 MAP3K4Q9Y6R4 1608 aa3.38□□□□□ -1.87
SLIRP-208ENST00000556956 FAM86C2PA6NEL3 165 aa3.38□□□□□ -1.87
SLIRP-208ENST00000556956 KIF3BO15066 747 aa3.38□□□□□ -1.87
SLIRP-208ENST00000556956 NEMFO60524 1076 aa3.38□□□□□ -1.87
SLIRP-208ENST00000556956 USP2O75604 605 aaPredicted RBP3.38□□□□□ -1.87
SLIRP-208ENST00000556956 RECKO95980 971 aa3.38□□□□□ -1.87
SLIRP-208ENST00000556956 TP53P04637 393 aaPredicted RBP3.38□□□□□ -1.87
SLIRP-208ENST00000556956 GSTM1P09488 218 aa3.38□□□□□ -1.87
SLIRP-208ENST00000556956 ZNF853P0CG23 659 aa3.38□□□□□ -1.87
SLIRP-208ENST00000556956 CCDC192P0DO97 292 aa3.38□□□□□ -1.87
SLIRP-208ENST00000556956 FBLN1P23142 703 aa3.38□□□□□ -1.87
SLIRP-208ENST00000556956 GJA8P48165 433 aa3.38□□□□□ -1.87
SLIRP-208ENST00000556956 GIPRP48546 466 aa3.38□□□□□ -1.87
SLIRP-208ENST00000556956 CDR1P51861 262 aa3.38□□□□□ -1.87
SLIRP-208ENST00000556956 SLC7A5Q01650 507 aa3.38□□□□□ -1.87
SLIRP-208ENST00000556956 NR1I3Q14994 352 aa3.38□□□□□ -1.87
SLIRP-208ENST00000556956 PPP2R5EQ16537 467 aa3.38□□□□□ -1.87
SLIRP-208ENST00000556956 TWISTNBQ3B726 338 aaPredicted RBP3.38□□□□□ -1.87
SLIRP-208ENST00000556956 NT5DC1Q5TFE4 455 aa3.38□□□□□ -1.87
SLIRP-208ENST00000556956 CEP85Q6P2H3 762 aa3.38□□□□□ -1.87
SLIRP-208ENST00000556956 ARHGAP30Q7Z6I6 1101 aaPredicted RBP3.38□□□□□ -1.87
SLIRP-208ENST00000556956 ADAT2Q7Z6V5 191 aaKnown RBP3.38□□□□□ -1.87
SLIRP-208ENST00000556956 METTL16Q86W50 562 aaKnown RBP3.38□□□□□ -1.87
SLIRP-208ENST00000556956 C16orf71Q8IYS4 520 aaPredicted RBP3.38□□□□□ -1.87
SLIRP-208ENST00000556956 CRACR2BQ8N4Y2 399 aaPredicted RBP3.38□□□□□ -1.87
SLIRP-208ENST00000556956 IPO4Q8TEX9 1081 aaKnown RBP3.38□□□□□ -1.87
SLIRP-208ENST00000556956 SHISA4Q96DD7 197 aa3.38□□□□□ -1.87
SLIRP-208ENST00000556956 LOXL4Q96JB6 756 aa3.38□□□□□ -1.87
SLIRP-208ENST00000556956 TIGD1Q96MW7 591 aa3.38□□□□□ -1.87
SLIRP-208ENST00000556956 DNAJC2Q99543 621 aaKnown RBP3.38□□□□□ -1.87
SLIRP-208ENST00000556956 TGIF2Q9GZN2 237 aa3.38□□□□□ -1.87
SLIRP-208ENST00000556956 VPS11Q9H270 941 aa3.38□□□□□ -1.87
SLIRP-208ENST00000556956 CCSER2Q9H7U1 834 aa3.38□□□□□ -1.87
SLIRP-208ENST00000556956 TTC12Q9H892 705 aaPredicted RBP3.38□□□□□ -1.87
SLIRP-208ENST00000556956 AP5S1Q9NUS5 200 aa3.38□□□□□ -1.87
SLIRP-208ENST00000556956 USP40Q9NVE5 1235 aa3.38□□□□□ -1.87
SLIRP-208ENST00000556956 WHRNQ9P202 907 aa3.38□□□□□ -1.87
SLIRP-208ENST00000556956 EBF1Q9UH73 591 aa3.38□□□□□ -1.87
SLIRP-208ENST00000556956 INPP5FQ9Y2H2 1132 aa3.38□□□□□ -1.87
SLIRP-208ENST00000556956 MED14O60244 1454 aa3.38□□□□□ -1.87
SLIRP-208ENST00000556956 KIAA1210Q9ULL0 1709 aa3.38□□□□□ -1.87
SLIRP-208ENST00000556956 PTPRCP08575 1304 aa3.38□□□□□ -1.87
SLIRP-208ENST00000556956 LTBP3Q9NS15 1303 aa3.38□□□□□ -1.87
SLIRP-208ENST00000556956 PNPLA6Q8IY17 1366 aa3.38□□□□□ -1.87
SLIRP-208ENST00000556956 CD109Q6YHK3 1445 aa3.37□□□□□ -1.87
SLIRP-208ENST00000556956 SSH2Q76I76 1423 aa3.37□□□□□ -1.87
SLIRP-208ENST00000556956 FANCAO15360 1455 aa3.37□□□□□ -1.87
SLIRP-208ENST00000556956 NRXN1Q9ULB1 1477 aa3.37□□□□□ -1.87
SLIRP-208ENST00000556956 CEP152O94986 1710 aa3.37□□□□□ -1.87
SLIRP-208ENST00000556956 RICTORQ6R327 1708 aa3.37□□□□□ -1.87
SLIRP-208ENST00000556956 TRBV23OR9-2A0A075B6M9 112 aa3.37□□□□□ -1.87
SLIRP-208ENST00000556956 NOTOA8MTQ0 251 aa3.37□□□□□ -1.87
SLIRP-208ENST00000556956 C9IYK1 514 aa3.37□□□□□ -1.87
SLIRP-208ENST00000556956 KIF2AO00139 706 aaPredicted RBP3.37□□□□□ -1.87
SLIRP-208ENST00000556956 FYB1O15117 783 aa3.37□□□□□ -1.87
SLIRP-208ENST00000556956 HTATSF1O43719 755 aaKnown RBP3.37□□□□□ -1.87
SLIRP-208ENST00000556956 CAVIN2O95810 425 aa3.37□□□□□ -1.87
SLIRP-208ENST00000556956 TUBB4AP04350 444 aa3.37□□□□□ -1.87
SLIRP-208ENST00000556956 TNNT1P13805 278 aa3.37□□□□□ -1.87
SLIRP-208ENST00000556956 PRKCAP17252 672 aa3.37□□□□□ -1.87
SLIRP-208ENST00000556956 U2AF2P26368 475 aaKnown RBP eCLIP3.37□□□□□ -1.871e-7■□□□□ 8
SLIRP-208ENST00000556956 PRKAR2BP31323 418 aa3.37□□□□□ -1.87
SLIRP-208ENST00000556956 CNR2P34972 360 aa3.37□□□□□ -1.87
SLIRP-208ENST00000556956 CTSKP43235 329 aa3.37□□□□□ -1.87
SLIRP-208ENST00000556956 CCT4P50991 539 aaKnown RBP3.37□□□□□ -1.87
SLIRP-208ENST00000556956 PDE1AP54750 535 aa3.37□□□□□ -1.87
SLIRP-208ENST00000556956 CASP7P55210 303 aa3.37□□□□□ -1.87
SLIRP-208ENST00000556956 CORO7P57737 925 aa3.37□□□□□ -1.87
SLIRP-208ENST00000556956 ERVFRD-1P60508 538 aa3.37□□□□□ -1.87
SLIRP-208ENST00000556956 YBX1P67809 324 aaKnown RBP3.37□□□□□ -1.87
SLIRP-208ENST00000556956 DHX8Q14562 1220 aaKnown RBP3.37□□□□□ -1.87
SLIRP-208ENST00000556956 CDSNQ15517 529 aa3.37□□□□□ -1.87
SLIRP-208ENST00000556956 TPD52L1Q16890 204 aaPredicted RBP3.37□□□□□ -1.87
SLIRP-208ENST00000556956 HSF5Q4G112 596 aaPredicted RBP3.37□□□□□ -1.87
SLIRP-208ENST00000556956 AXDND1Q5T1B0 1012 aaPredicted RBP3.37□□□□□ -1.87
SLIRP-208ENST00000556956 EEF1DP3Q658K8 133 aa3.37□□□□□ -1.87
SLIRP-208ENST00000556956 DCAF15Q66K64 600 aa3.37□□□□□ -1.87
SLIRP-208ENST00000556956 POMZP3Q6PJE2 187 aa3.37□□□□□ -1.87
SLIRP-208ENST00000556956 DRC7Q8IY82 874 aa3.37□□□□□ -1.87
SLIRP-208ENST00000556956 KRT222Q8N1A0 295 aa3.37□□□□□ -1.87
SLIRP-208ENST00000556956 FIBCD1Q8N539 461 aa3.37□□□□□ -1.87
SLIRP-208ENST00000556956 CCDC112Q8NEF3 446 aa3.37□□□□□ -1.87
SLIRP-208ENST00000556956 ZNF397Q8NF99 534 aaPredicted RBP3.37□□□□□ -1.87
SLIRP-208ENST00000556956 NUP43Q8NFH3 380 aa3.37□□□□□ -1.87
SLIRP-208ENST00000556956 NLGN2Q8NFZ4 835 aa3.37□□□□□ -1.87
SLIRP-208ENST00000556956 DDX1Q92499 740 aaKnown RBP3.37□□□□□ -1.87
SLIRP-208ENST00000556956 RTF1Q92541 710 aaKnown RBP3.37□□□□□ -1.87
SLIRP-208ENST00000556956 ZSCAN31Q96LW9 406 aaPredicted RBP3.37□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms