RNA–Protein interactions for RNA: ENST00000555116.5

SHMT2-217, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,885 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-217ENST00000555116 UMODL1Q5DID0 1318 aa16.06■□□□□ 0.16
SHMT2-217ENST00000555116 EVPLQ92817 2033 aa16.06■□□□□ 0.16
SHMT2-217ENST00000555116 TBX3O15119 743 aa16.05■□□□□ 0.16
SHMT2-217ENST00000555116 MARK3P27448 753 aa16.05■□□□□ 0.16
SHMT2-217ENST00000555116 CYP2C18P33260 490 aa16.05■□□□□ 0.16
SHMT2-217ENST00000555116 AFAP1L1Q8TED9 768 aa16.05■□□□□ 0.16
SHMT2-217ENST00000555116 AZI2Q9H6S1 392 aa16.05■□□□□ 0.16
SHMT2-217ENST00000555116 PCDHA10Q9Y5I2 948 aa16.05■□□□□ 0.16
SHMT2-217ENST00000555116 C17orf102A2RUQ5 167 aa16.05■□□□□ 0.16
SHMT2-217ENST00000555116 ADAM17P78536 824 aa16.05■□□□□ 0.16
SHMT2-217ENST00000555116 PLCB4Q15147 1175 aa16.05■□□□□ 0.16
SHMT2-217ENST00000555116 MFSD5Q6N075 450 aa16.05■□□□□ 0.16
SHMT2-217ENST00000555116 DHX38Q92620 1227 aaKnown RBP16.05■□□□□ 0.16
SHMT2-217ENST00000555116 INTS4Q96HW7 963 aaKnown RBP16.05■□□□□ 0.16
SHMT2-217ENST00000555116 SETD4Q9NVD3 440 aa16.05■□□□□ 0.16
SHMT2-217ENST00000555116 TCEAL9Q9UHQ7 104 aa16.05■□□□□ 0.16
SHMT2-217ENST00000555116 VAV3Q9UKW4 847 aa16.05■□□□□ 0.16
SHMT2-217ENST00000555116 NOD1Q9Y239 953 aa16.05■□□□□ 0.16
SHMT2-217ENST00000555116 TET1Q8NFU7 2136 aa16.05■□□□□ 0.16
SHMT2-217ENST00000555116 WDR64B1ANS9 1081 aa16.04■□□□□ 0.16
SHMT2-217ENST00000555116 PSAPP07602 524 aa16.04■□□□□ 0.16
SHMT2-217ENST00000555116 GNL2Q13823 731 aaKnown RBP16.04■□□□□ 0.16
SHMT2-217ENST00000555116 FAM160B1Q5W0V3 765 aa16.04■□□□□ 0.16
SHMT2-217ENST00000555116 LARP1BQ659C4 914 aaKnown RBP16.04■□□□□ 0.16
SHMT2-217ENST00000555116 SWSAP1Q6NVH7 229 aa16.04■□□□□ 0.16
SHMT2-217ENST00000555116 LMBR1Q8WVP7 490 aa16.04■□□□□ 0.16
SHMT2-217ENST00000555116 WNT8AQ9H1J5 351 aa16.04■□□□□ 0.16
SHMT2-217ENST00000555116 ZNF302Q9NR11 478 aa16.04■□□□□ 0.16
SHMT2-217ENST00000555116 DISC1Q9NRI5 854 aa16.04■□□□□ 0.16
SHMT2-217ENST00000555116 BACH1O14867 736 aa16.03■□□□□ 0.16
SHMT2-217ENST00000555116 TREHO43280 583 aa16.03■□□□□ 0.16
SHMT2-217ENST00000555116 CHMP2AO43633 222 aa16.03■□□□□ 0.16
SHMT2-217ENST00000555116 ATP2B1P20020 1258 aa16.03■□□□□ 0.16
SHMT2-217ENST00000555116 ATP4AP20648 1035 aa16.03■□□□□ 0.16
SHMT2-217ENST00000555116 SFNP31947 248 aa16.03■□□□□ 0.16
SHMT2-217ENST00000555116 SLC26A2P50443 739 aa16.03■□□□□ 0.16
SHMT2-217ENST00000555116 JAK3P52333 1124 aa16.03■□□□□ 0.16
SHMT2-217ENST00000555116 PTK7Q13308 1070 aa16.03■□□□□ 0.16
SHMT2-217ENST00000555116 PPP2R5CQ13362 524 aa16.03■□□□□ 0.16
SHMT2-217ENST00000555116 TRIM71Q2Q1W2 868 aaKnown RBP16.03■□□□□ 0.16
SHMT2-217ENST00000555116 SERINC5Q86VE9 423 aa16.03■□□□□ 0.16
SHMT2-217ENST00000555116 RDM1Q8NG50 284 aa16.03■□□□□ 0.16
SHMT2-217ENST00000555116 WNT8BQ93098 351 aa16.03■□□□□ 0.16
SHMT2-217ENST00000555116 MAFBQ9Y5Q3 323 aaPredicted RBP16.03■□□□□ 0.16
SHMT2-217ENST00000555116 NRCAMQ92823 1304 aa16.03■□□□□ 0.16
SHMT2-217ENST00000555116 H3BQV1 296 aa16.03■□□□□ 0.16
SHMT2-217ENST00000555116 TRAPPC10P48553 1259 aa16.03■□□□□ 0.16
SHMT2-217ENST00000555116 RBL2Q08999 1139 aa16.03■□□□□ 0.16
SHMT2-217ENST00000555116 PPFIA1Q13136 1202 aa16.03■□□□□ 0.16
SHMT2-217ENST00000555116 PDXDC2PQ6P474 469 aa16.03■□□□□ 0.16
SHMT2-217ENST00000555116 MIER3Q7Z3K6 550 aa16.03■□□□□ 0.16
SHMT2-217ENST00000555116 ATP6V0A1Q93050 837 aa16.03■□□□□ 0.16
SHMT2-217ENST00000555116 UBE2OQ9C0C9 1292 aaKnown RBP16.03■□□□□ 0.16
SHMT2-217ENST00000555116 GABBR1Q9UBS5 961 aa16.03■□□□□ 0.16
SHMT2-217ENST00000555116 SAMM50Q9Y512 469 aa16.03■□□□□ 0.16
SHMT2-217ENST00000555116 IGSF9BQ9UPX0 1349 aa16.02■□□□□ 0.16
SHMT2-217ENST00000555116 EML1O00423 815 aa16.02■□□□□ 0.16
SHMT2-217ENST00000555116 PITPNM1O00562 1244 aa16.02■□□□□ 0.16
SHMT2-217ENST00000555116 NEMFO60524 1076 aa16.02■□□□□ 0.16
SHMT2-217ENST00000555116 GNAT1P11488 350 aa16.02■□□□□ 0.16
SHMT2-217ENST00000555116 INSRRP14616 1297 aa16.02■□□□□ 0.16
SHMT2-217ENST00000555116 TOB1P50616 345 aaPredicted RBP16.02■□□□□ 0.16
SHMT2-217ENST00000555116 EPHB4P54760 987 aa16.02■□□□□ 0.16
SHMT2-217ENST00000555116 FPGSQ05932 587 aa16.02■□□□□ 0.16
SHMT2-217ENST00000555116 GRIK4Q16099 956 aa16.02■□□□□ 0.16
SHMT2-217ENST00000555116 CALCRLQ16602 461 aa16.02■□□□□ 0.16
SHMT2-217ENST00000555116 HSCBQ8IWL3 235 aa16.02■□□□□ 0.16
SHMT2-217ENST00000555116 SLFN12Q8IYM2 578 aa16.02■□□□□ 0.16
SHMT2-217ENST00000555116 CAGE1Q8TC20 777 aa16.02■□□□□ 0.16
SHMT2-217ENST00000555116 MTMR9Q96QG7 549 aa16.02■□□□□ 0.16
SHMT2-217ENST00000555116 TMEM60Q9H2L4 133 aa16.02■□□□□ 0.16
SHMT2-217ENST00000555116 POTEB3A0JP26 581 aa16.01■□□□□ 0.15
SHMT2-217ENST00000555116 BAG4O95429 457 aaKnown RBP16.01■□□□□ 0.15
SHMT2-217ENST00000555116 MCM7P33993 719 aa16.01■□□□□ 0.15
SHMT2-217ENST00000555116 CCL23P55773 120 aa16.01■□□□□ 0.15
SHMT2-217ENST00000555116 SPIRE1Q08AE8 756 aa16.01■□□□□ 0.15
SHMT2-217ENST00000555116 ORC2Q13416 577 aaPredicted RBP16.01■□□□□ 0.15
SHMT2-217ENST00000555116 BFSP2Q13515 415 aa16.01■□□□□ 0.15
SHMT2-217ENST00000555116 ZNF174Q15697 407 aa16.01■□□□□ 0.15
SHMT2-217ENST00000555116 UGCGQ16739 394 aa16.01■□□□□ 0.15
SHMT2-217ENST00000555116 TTC38Q5R3I4 469 aa16.01■□□□□ 0.15
SHMT2-217ENST00000555116 MARCH8Q5T0T0 291 aa16.01■□□□□ 0.15
SHMT2-217ENST00000555116 MCTP1Q6DN14 999 aa16.01■□□□□ 0.15
SHMT2-217ENST00000555116 POTEBQ6S5H4 581 aa16.01■□□□□ 0.15
SHMT2-217ENST00000555116 TMEM199Q8N511 208 aa16.01■□□□□ 0.15
SHMT2-217ENST00000555116 ATP8B4Q8TF62 1192 aa16.01■□□□□ 0.15
SHMT2-217ENST00000555116 FOXD4L1Q9NU39 408 aa16.01■□□□□ 0.15
SHMT2-217ENST00000555116 NOL7Q9UMY1 257 aaKnown RBP16.01■□□□□ 0.15
SHMT2-217ENST00000555116 TRPC6Q9Y210 931 aa16.01■□□□□ 0.15
SHMT2-217ENST00000555116 LOXHD1Q8IVV2 1947 aa16.01■□□□□ 0.15
SHMT2-217ENST00000555116 MBLAC1A4D2B0 266 aaPredicted RBP16.01■□□□□ 0.15
SHMT2-217ENST00000555116 ZNF862O60290 1169 aa16.01■□□□□ 0.15
SHMT2-217ENST00000555116 MARCH6O60337 910 aa16.01■□□□□ 0.15
SHMT2-217ENST00000555116 CSF2RAP15509 400 aa16.01■□□□□ 0.15
SHMT2-217ENST00000555116 PPIGQ13427 754 aaKnown RBP eCLIP16.01■□□□□ 0.153e-8■□□□□ 10.3
SHMT2-217ENST00000555116 CCDC155Q8N6L0 562 aa16.01■□□□□ 0.15
SHMT2-217ENST00000555116 VWCEQ96DN2 955 aa16.01■□□□□ 0.15
SHMT2-217ENST00000555116 SCLYQ96I15 445 aa16.01■□□□□ 0.15
SHMT2-217ENST00000555116 RRN3P2A6NIE6 340 aa16■□□□□ 0.15
SHMT2-217ENST00000555116 HBP1O60381 514 aa16■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms