RNA–Protein interactions for RNA: ENST00000554656.5

SHMT2-215, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 817 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-215ENST00000554656 JADE2Q9NQC1 790 aa12.11□□□□□ -0.47
SHMT2-215ENST00000554656 PCDHA6Q9UN73 950 aa12.11□□□□□ -0.47
SHMT2-215ENST00000554656 PCDHA8Q9Y5H6 950 aa12.11□□□□□ -0.47
SHMT2-215ENST00000554656 SLC12A7Q9Y666 1083 aa12.11□□□□□ -0.47
SHMT2-215ENST00000554656 EVPLQ92817 2033 aa12.1□□□□□ -0.47
SHMT2-215ENST00000554656 MTMR1Q13613 665 aa12.1□□□□□ -0.47
SHMT2-215ENST00000554656 RASEFQ8IZ41 740 aa12.1□□□□□ -0.47
SHMT2-215ENST00000554656 GIMAP8Q8ND71 665 aaPredicted RBP12.1□□□□□ -0.47
SHMT2-215ENST00000554656 LINC01599Q8WXQ3 324 aa12.1□□□□□ -0.47
SHMT2-215ENST00000554656 SEPT1Q8WYJ6 367 aa12.1□□□□□ -0.47
SHMT2-215ENST00000554656 CDHR1Q96JP9 859 aa12.1□□□□□ -0.47
SHMT2-215ENST00000554656 YME1L1Q96TA2 773 aa12.1□□□□□ -0.47
SHMT2-215ENST00000554656 TUBE1Q9UJT0 475 aa12.1□□□□□ -0.47
SHMT2-215ENST00000554656 BRPF3Q9ULD4 1205 aa12.1□□□□□ -0.47
SHMT2-215ENST00000554656 H3BNC9 293 aa12.09□□□□□ -0.47
SHMT2-215ENST00000554656 EXOSC10Q01780 885 aaKnown RBP12.09□□□□□ -0.47
SHMT2-215ENST00000554656 ITGB3BPQ13352 177 aaPredicted RBP12.09□□□□□ -0.47
SHMT2-215ENST00000554656 RABEP1Q15276 862 aa12.09□□□□□ -0.47
SHMT2-215ENST00000554656 ADCK5Q3MIX3 580 aa12.09□□□□□ -0.47
SHMT2-215ENST00000554656 LEXMQ3ZCV2 418 aa12.09□□□□□ -0.47
SHMT2-215ENST00000554656 FBXO47Q5MNV8 452 aa12.09□□□□□ -0.47
SHMT2-215ENST00000554656 TMEM192Q8IY95 271 aa12.09□□□□□ -0.47
SHMT2-215ENST00000554656 GADD45GIP1Q8TAE8 222 aaPredicted RBP12.09□□□□□ -0.47
SHMT2-215ENST00000554656 TRAPPC12Q8WVT3 735 aa12.09□□□□□ -0.47
SHMT2-215ENST00000554656 DNAJB3Q8WWF6 145 aa12.09□□□□□ -0.47
SHMT2-215ENST00000554656 APBB2Q92870 758 aa12.09□□□□□ -0.47
SHMT2-215ENST00000554656 SNX21Q969T3 373 aa12.09□□□□□ -0.47
SHMT2-215ENST00000554656 AGO3Q9H9G7 860 aaKnown RBP12.09□□□□□ -0.47
SHMT2-215ENST00000554656 FAM217BQ9NTX9 383 aaPredicted RBP12.09□□□□□ -0.47
SHMT2-215ENST00000554656 ERAP1Q9NZ08 941 aa12.09□□□□□ -0.47
SHMT2-215ENST00000554656 CDY2AQ9Y6F7 541 aa12.09□□□□□ -0.47
SHMT2-215ENST00000554656 MYH9P35579 1960 aaKnown RBP12.09□□□□□ -0.47
SHMT2-215ENST00000554656 PLXNA4Q9HCM2 1894 aa12.08□□□□□ -0.48
SHMT2-215ENST00000554656 C5orf42Q9H799 3197 aa12.08□□□□□ -0.48
SHMT2-215ENST00000554656 SPDYE3A6NKU9 549 aa12.08□□□□□ -0.48
SHMT2-215ENST00000554656 STXBP3O00186 592 aa12.08□□□□□ -0.48
SHMT2-215ENST00000554656 ADAMTS3O15072 1205 aa12.08□□□□□ -0.48
SHMT2-215ENST00000554656 ARP10275 920 aa12.08□□□□□ -0.48
SHMT2-215ENST00000554656 KCNA5P22460 613 aa12.08□□□□□ -0.48
SHMT2-215ENST00000554656 IGBP1P78318 339 aa12.08□□□□□ -0.48
SHMT2-215ENST00000554656 GPM6BQ13491 265 aa12.08□□□□□ -0.48
SHMT2-215ENST00000554656 COL19A1Q14993 1142 aa12.08□□□□□ -0.48
SHMT2-215ENST00000554656 TCEAL5Q5H9L2 206 aa12.08□□□□□ -0.48
SHMT2-215ENST00000554656 TAF2Q6P1X5 1199 aa12.08□□□□□ -0.48
SHMT2-215ENST00000554656 GLG1Q92896 1179 aa12.08□□□□□ -0.48
SHMT2-215ENST00000554656 SAMD11Q96NU1 681 aa12.08□□□□□ -0.48
SHMT2-215ENST00000554656 KIF2CQ99661 725 aa12.08□□□□□ -0.48
SHMT2-215ENST00000554656 MXRA8Q9BRK3 442 aa12.08□□□□□ -0.48
SHMT2-215ENST00000554656 SMARCAD1Q9H4L7 1026 aa12.08□□□□□ -0.48
SHMT2-215ENST00000554656 JPH1Q9HDC5 661 aaPredicted RBP12.08□□□□□ -0.48
SHMT2-215ENST00000554656 RIC8AQ9NPQ8 531 aa12.08□□□□□ -0.48
SHMT2-215ENST00000554656 C11orf16Q9NQ32 467 aa12.08□□□□□ -0.48
SHMT2-215ENST00000554656 KCNH7Q9NS40 1196 aa12.08□□□□□ -0.48
SHMT2-215ENST00000554656 TMEM260Q9NX78 707 aa12.08□□□□□ -0.48
SHMT2-215ENST00000554656 SLC9A2Q9UBY0 812 aa12.08□□□□□ -0.48
SHMT2-215ENST00000554656 FNDC1Q4ZHG4 1894 aaPredicted RBP12.08□□□□□ -0.48
SHMT2-215ENST00000554656 NFASCO94856 1347 aa12.08□□□□□ -0.48
SHMT2-215ENST00000554656 ENPP3O14638 875 aa12.07□□□□□ -0.48
SHMT2-215ENST00000554656 INSRRP14616 1297 aa12.07□□□□□ -0.48
SHMT2-215ENST00000554656 IL9P15248 144 aa12.07□□□□□ -0.48
SHMT2-215ENST00000554656 CDC27P30260 824 aa12.07□□□□□ -0.48
SHMT2-215ENST00000554656 HSPA4P34932 840 aa12.07□□□□□ -0.48
SHMT2-215ENST00000554656 CLK2P49760 499 aaKnown RBP12.07□□□□□ -0.48
SHMT2-215ENST00000554656 NAPAP54920 295 aa12.07□□□□□ -0.48
SHMT2-215ENST00000554656 ACTR2P61160 394 aa12.07□□□□□ -0.48
SHMT2-215ENST00000554656 MRPS6P82932 125 aaKnown RBP12.07□□□□□ -0.48
SHMT2-215ENST00000554656 PLCB4Q15147 1175 aa12.07□□□□□ -0.48
SHMT2-215ENST00000554656 RTN1Q16799 776 aa12.07□□□□□ -0.48
SHMT2-215ENST00000554656 TIGD5Q53EQ6 642 aa12.07□□□□□ -0.48
SHMT2-215ENST00000554656 TSHZ1Q6ZSZ6 1077 aa12.07□□□□□ -0.48
SHMT2-215ENST00000554656 RTN4RL1Q86UN2 441 aaPredicted RBP12.07□□□□□ -0.48
SHMT2-215ENST00000554656 CRIPAKQ8N1N5 446 aa12.07□□□□□ -0.48
SHMT2-215ENST00000554656 NEK9Q8TD19 979 aa12.07□□□□□ -0.48
SHMT2-215ENST00000554656 ZNF689Q96CS4 500 aaPredicted RBP12.07□□□□□ -0.48
SHMT2-215ENST00000554656 NEK1Q96PY6 1258 aa12.07□□□□□ -0.48
SHMT2-215ENST00000554656 ANO3Q9BYT9 981 aa12.07□□□□□ -0.48
SHMT2-215ENST00000554656 FAM49AQ9H0Q0 323 aaPredicted RBP12.07□□□□□ -0.48
SHMT2-215ENST00000554656 DAXXQ9UER7 740 aaPredicted RBP12.07□□□□□ -0.48
SHMT2-215ENST00000554656 ADGRA3Q8IWK6 1321 aa12.07□□□□□ -0.48
SHMT2-215ENST00000554656 C5orf67F2Z3F1 127 aa12.06□□□□□ -0.48
SHMT2-215ENST00000554656 H3BQ06 376 aaPredicted RBP12.06□□□□□ -0.48
SHMT2-215ENST00000554656 GRM6O15303 877 aa12.06□□□□□ -0.48
SHMT2-215ENST00000554656 ZBTB43O43298 467 aa12.06□□□□□ -0.48
SHMT2-215ENST00000554656 CCNE2O96020 404 aa12.06□□□□□ -0.48
SHMT2-215ENST00000554656 CPA1P15085 419 aa12.06□□□□□ -0.48
SHMT2-215ENST00000554656 CD52P31358 61 aa12.06□□□□□ -0.48
SHMT2-215ENST00000554656 CTNNB1P35222 781 aa12.06□□□□□ -0.48
SHMT2-215ENST00000554656 SREBF1P36956 1147 aa12.06□□□□□ -0.48
SHMT2-215ENST00000554656 ADCY7P51828 1080 aa12.06□□□□□ -0.48
SHMT2-215ENST00000554656 TSGA10IPQ3SY00 556 aa12.06□□□□□ -0.48
SHMT2-215ENST00000554656 PPP1R18Q6NYC8 613 aa12.06□□□□□ -0.48
SHMT2-215ENST00000554656 DHX32Q7L7V1 743 aaKnown RBP12.06□□□□□ -0.48
SHMT2-215ENST00000554656 FAM178BQ8IXR5 827 aa12.06□□□□□ -0.48
SHMT2-215ENST00000554656 FIBCD1Q8N539 461 aa12.06□□□□□ -0.48
SHMT2-215ENST00000554656 BANK1Q8NDB2 785 aa12.06□□□□□ -0.48
SHMT2-215ENST00000554656 KCNB2Q92953 911 aa12.06□□□□□ -0.48
SHMT2-215ENST00000554656 CLP1Q92989 425 aaKnown RBP12.06□□□□□ -0.48
SHMT2-215ENST00000554656 LRFN3Q9BTN0 628 aa12.06□□□□□ -0.48
SHMT2-215ENST00000554656 C1QTNF1Q9BXJ1 281 aa12.06□□□□□ -0.48
SHMT2-215ENST00000554656 AGO4Q9HCK5 861 aaKnown RBP12.06□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms