RNA–Protein interactions for RNA: ENST00000552008.5

LIMA1-209, Transcript of LIM domain and actin binding 1, humanhuman

TSL 5

Gene LIMA1, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-209ENST00000552008 IQCEQ6IPM2 695 aa3.16□□□□□ -1.9
LIMA1-209ENST00000552008 FILIP1Q7Z7B0 1213 aa3.16□□□□□ -1.9
LIMA1-209ENST00000552008 ZC3H18Q86VM9 953 aaKnown RBP3.16□□□□□ -1.9
LIMA1-209ENST00000552008 PPIL6Q8IXY8 311 aa3.16□□□□□ -1.9
LIMA1-209ENST00000552008 JMYQ8N9B5 988 aa3.16□□□□□ -1.9
LIMA1-209ENST00000552008 TMEM145Q8NBT3 493 aa3.16□□□□□ -1.9
LIMA1-209ENST00000552008 LARP4BQ92615 738 aaKnown RBP3.16□□□□□ -1.9
LIMA1-209ENST00000552008 EXOC2Q96KP1 924 aa3.16□□□□□ -1.9
LIMA1-209ENST00000552008 FCRL3Q96P31 734 aaPredicted RBP3.16□□□□□ -1.9
LIMA1-209ENST00000552008 GNRHR2Q96P88 292 aa3.16□□□□□ -1.9
LIMA1-209ENST00000552008 TMX1Q9H3N1 280 aa3.16□□□□□ -1.9
LIMA1-209ENST00000552008 GPRC5CQ9NQ84 441 aa3.16□□□□□ -1.9
LIMA1-209ENST00000552008 CLEC1BQ9P126 229 aa3.16□□□□□ -1.9
LIMA1-209ENST00000552008 PLAAQ9Y263 795 aa3.16□□□□□ -1.9
LIMA1-209ENST00000552008 SIT1Q9Y3P8 196 aa3.16□□□□□ -1.9
LIMA1-209ENST00000552008 PRKAB1Q9Y478 270 aa3.16□□□□□ -1.9
LIMA1-209ENST00000552008 NPHP3-ACAD11A0A0J9YXS1 232 aa3.15□□□□□ -1.91
LIMA1-209ENST00000552008 BLACEA4D250 179 aa3.15□□□□□ -1.91
LIMA1-209ENST00000552008 AQP7O14520 342 aa3.15□□□□□ -1.91
LIMA1-209ENST00000552008 PPM1GO15355 546 aaPredicted RBP3.15□□□□□ -1.91
LIMA1-209ENST00000552008 DLX3O60479 287 aa3.15□□□□□ -1.91
LIMA1-209ENST00000552008 DNAJC6O75061 913 aa3.15□□□□□ -1.91
LIMA1-209ENST00000552008 RAPGEF3O95398 923 aa3.15□□□□□ -1.91
LIMA1-209ENST00000552008 THBDP07204 575 aa3.15□□□□□ -1.91
LIMA1-209ENST00000552008 NAT1P18440 290 aa3.15□□□□□ -1.91
LIMA1-209ENST00000552008 BMP5P22003 454 aa3.15□□□□□ -1.91
LIMA1-209ENST00000552008 IL13P35225 146 aa3.15□□□□□ -1.91
LIMA1-209ENST00000552008 FLT3P36888 993 aa3.15□□□□□ -1.91
LIMA1-209ENST00000552008 FNDC3BQ53EP0 1204 aaKnown RBP3.15□□□□□ -1.91
LIMA1-209ENST00000552008 TCTN3Q6NUS6 607 aa3.15□□□□□ -1.91
LIMA1-209ENST00000552008 CNNM4Q6P4Q7 775 aa3.15□□□□□ -1.91
LIMA1-209ENST00000552008 ZNF662Q6ZS27 426 aa3.15□□□□□ -1.91
LIMA1-209ENST00000552008 MTDHQ86UE4 582 aaKnown RBP3.15□□□□□ -1.91
LIMA1-209ENST00000552008 MIB1Q86YT6 1006 aa3.15□□□□□ -1.91
LIMA1-209ENST00000552008 NIM1KQ8IY84 436 aa3.15□□□□□ -1.91
LIMA1-209ENST00000552008 ZNF513Q8N8E2 541 aaPredicted RBP3.15□□□□□ -1.91
LIMA1-209ENST00000552008 ZCRB1Q8TBF4 217 aaKnown RBP3.15□□□□□ -1.91
LIMA1-209ENST00000552008 DCAF4Q8WV16 495 aa3.15□□□□□ -1.91
LIMA1-209ENST00000552008 DIO2Q92813 273 aa3.15□□□□□ -1.91
LIMA1-209ENST00000552008 EDAQ92838 391 aa3.15□□□□□ -1.91
LIMA1-209ENST00000552008 PTPRN2Q92932 1015 aa3.15□□□□□ -1.91
LIMA1-209ENST00000552008 MRPL4Q9BYD3 311 aaKnown RBP3.15□□□□□ -1.91
LIMA1-209ENST00000552008 SPC25Q9HBM1 224 aa3.15□□□□□ -1.91
LIMA1-209ENST00000552008 NCOA5Q9HCD5 579 aaKnown RBP3.15□□□□□ -1.91
LIMA1-209ENST00000552008 PLSCR1O15162 318 aa3.14□□□□□ -1.91
LIMA1-209ENST00000552008 OPA1O60313 960 aa3.14□□□□□ -1.91
LIMA1-209ENST00000552008 RAMP2O60895 175 aa3.14□□□□□ -1.91
LIMA1-209ENST00000552008 C1SP09871 688 aa3.14□□□□□ -1.91
LIMA1-209ENST00000552008 MYCLP1P12525 358 aaPredicted RBP3.14□□□□□ -1.91
LIMA1-209ENST00000552008 PLS3P13797 630 aa3.14□□□□□ -1.91
LIMA1-209ENST00000552008 RBM10P98175 930 aaKnown RBP3.14□□□□□ -1.91
LIMA1-209ENST00000552008 KCNAB2Q13303 367 aa3.14□□□□□ -1.91
LIMA1-209ENST00000552008 PABPC4Q13310 644 aaKnown RBP eCLIP3.14□□□□□ -1.91
LIMA1-209ENST00000552008 ADAM9Q13443 819 aa3.14□□□□□ -1.91
LIMA1-209ENST00000552008 TKFCQ3LXA3 575 aa3.14□□□□□ -1.91
LIMA1-209ENST00000552008 E4F1Q66K89 784 aaPredicted RBP3.14□□□□□ -1.91
LIMA1-209ENST00000552008 RCSD1Q6JBY9 416 aa3.14□□□□□ -1.91
LIMA1-209ENST00000552008 MAMDC2Q7Z304 686 aaPredicted RBP3.14□□□□□ -1.91
LIMA1-209ENST00000552008 KIAA0907Q7Z7F0 614 aaPredicted RBP3.14□□□□□ -1.91
LIMA1-209ENST00000552008 CPNE8Q86YQ8 564 aa3.14□□□□□ -1.91
LIMA1-209ENST00000552008 C1orf210Q8IVY1 113 aa3.14□□□□□ -1.91
LIMA1-209ENST00000552008 ZC3H7AQ8IWR0 971 aaKnown RBP3.14□□□□□ -1.91
LIMA1-209ENST00000552008 DHX37Q8IY37 1157 aaKnown RBP3.14□□□□□ -1.91
LIMA1-209ENST00000552008 IFNL3Q8IZI9 196 aa3.14□□□□□ -1.91
LIMA1-209ENST00000552008 KLHL36Q8N4N3 616 aa3.14□□□□□ -1.91
LIMA1-209ENST00000552008 COPS5Q92905 334 aa3.14□□□□□ -1.91
LIMA1-209ENST00000552008 NINJ1Q92982 152 aa3.14□□□□□ -1.91
LIMA1-209ENST00000552008 OSBP2Q969R2 916 aa3.14□□□□□ -1.91
LIMA1-209ENST00000552008 MFSD3Q96ES6 412 aa3.14□□□□□ -1.91
LIMA1-209ENST00000552008 MAGEB10Q96LZ2 347 aaPredicted RBP3.14□□□□□ -1.91
LIMA1-209ENST00000552008 PLEKHG4BQ96PX9 1271 aa3.14□□□□□ -1.91
LIMA1-209ENST00000552008 ALG1Q9BT22 464 aa3.14□□□□□ -1.91
LIMA1-209ENST00000552008 MTA3Q9BTC8 594 aa3.14□□□□□ -1.91
LIMA1-209ENST00000552008 MCMBPQ9BTE3 642 aa3.14□□□□□ -1.91
LIMA1-209ENST00000552008 MMRN2Q9H8L6 949 aa3.14□□□□□ -1.91
LIMA1-209ENST00000552008 BTG4Q9NY30 223 aa3.14□□□□□ -1.91
LIMA1-209ENST00000552008 TRAF6Q9Y4K3 522 aa3.14□□□□□ -1.91
LIMA1-209ENST00000552008 hCG_2014768A0A024R1R8 64 aa3.13□□□□□ -1.91
LIMA1-209ENST00000552008 NPHS1O60500 1241 aa3.13□□□□□ -1.91
LIMA1-209ENST00000552008 RFPL3O75679 317 aa3.13□□□□□ -1.91
LIMA1-209ENST00000552008 SCG5P05408 212 aa3.13□□□□□ -1.91
LIMA1-209ENST00000552008 HSP90B1P14625 803 aaKnown RBP3.13□□□□□ -1.91
LIMA1-209ENST00000552008 MAKP20794 623 aa3.13□□□□□ -1.91
LIMA1-209ENST00000552008 LTBRP36941 435 aa3.13□□□□□ -1.91
LIMA1-209ENST00000552008 NEK4P51957 841 aa3.13□□□□□ -1.91
LIMA1-209ENST00000552008 GTF2A2P52657 109 aa3.13□□□□□ -1.91
LIMA1-209ENST00000552008 ANAPC15P60006 121 aa3.13□□□□□ -1.91
LIMA1-209ENST00000552008 IGBP1P78318 339 aa3.13□□□□□ -1.91
LIMA1-209ENST00000552008 ST5P78524 1137 aa3.13□□□□□ -1.91
LIMA1-209ENST00000552008 GUCY1A3Q02108 690 aa3.13□□□□□ -1.91
LIMA1-209ENST00000552008 NFATC3Q12968 1075 aa3.13□□□□□ -1.91
LIMA1-209ENST00000552008 DALRD3Q5D0E6 543 aaKnown RBP3.13□□□□□ -1.91
LIMA1-209ENST00000552008 ZKSCAN2Q63HK3 967 aa3.13□□□□□ -1.91
LIMA1-209ENST00000552008 EP400NLQ6ZTU2 488 aa3.13□□□□□ -1.91
LIMA1-209ENST00000552008 UBE2R2Q712K3 238 aaPredicted RBP3.13□□□□□ -1.91
LIMA1-209ENST00000552008 ZNF627Q7L945 461 aa3.13□□□□□ -1.91
LIMA1-209ENST00000552008 AHI1Q8N157 1196 aa3.13□□□□□ -1.91
LIMA1-209ENST00000552008 GIMAP8Q8ND71 665 aaPredicted RBP3.13□□□□□ -1.91
LIMA1-209ENST00000552008 ZNF483Q8TF39 744 aaPredicted RBP3.13□□□□□ -1.91
LIMA1-209ENST00000552008 CACTINQ8WUQ7 758 aaKnown RBP3.13□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms