RNA–Protein interactions for RNA: ENST00000551655.1

VPS29-209, Transcript of VPS29, retromer complex component, humanhuman

TSL 5

Gene VPS29, Length 766 nt, Biotype processed transcript, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-209ENST00000551655 ZBTB10Q96DT7 871 aa16.83■□□□□ 0.28
VPS29-209ENST00000551655 ZKSCAN3Q9BRR0 538 aa16.83■□□□□ 0.28
VPS29-209ENST00000551655 MFSD1Q9H3U5 465 aa16.83■□□□□ 0.28
VPS29-209ENST00000551655 VAT1LQ9HCJ6 419 aa16.83■□□□□ 0.28
VPS29-209ENST00000551655 LOXHD1Q8IVV2 1947 aa16.82■□□□□ 0.28
VPS29-209ENST00000551655 CFAP47Q6ZTR5 3102 aa16.82■□□□□ 0.28
VPS29-209ENST00000551655 NOP56O00567 594 aaKnown RBP16.82■□□□□ 0.28
VPS29-209ENST00000551655 GNAT1P11488 350 aa16.82■□□□□ 0.28
VPS29-209ENST00000551655 HSD17B4P51659 736 aa16.82■□□□□ 0.28
VPS29-209ENST00000551655 KCNC3Q14003 757 aa16.82■□□□□ 0.28
VPS29-209ENST00000551655 VSIG10LQ86VR7 867 aa16.82■□□□□ 0.28
VPS29-209ENST00000551655 UBALD2Q8IYN6 164 aa16.82■□□□□ 0.28
VPS29-209ENST00000551655 KCNG4Q8TDN1 519 aa16.82■□□□□ 0.28
VPS29-209ENST00000551655 POMKQ9H5K3 350 aa16.82■□□□□ 0.28
VPS29-209ENST00000551655 MRPL11Q9Y3B7 192 aaKnown RBP16.82■□□□□ 0.28
VPS29-209ENST00000551655 CDY2AQ9Y6F7 541 aa16.82■□□□□ 0.28
VPS29-209ENST00000551655 KAT6AQ92794 2004 aa16.82■□□□□ 0.28
VPS29-209ENST00000551655 CEP250Q9BV73 2442 aa16.81■□□□□ 0.28
VPS29-209ENST00000551655 HAND2P61296 217 aa16.81■□□□□ 0.28
VPS29-209ENST00000551655 SP4Q02446 784 aa16.81■□□□□ 0.28
VPS29-209ENST00000551655 ANGPT1Q15389 498 aa16.81■□□□□ 0.28
VPS29-209ENST00000551655 GPATCH4Q5T3I0 446 aaKnown RBP16.81■□□□□ 0.28
VPS29-209ENST00000551655 PLPP4Q5VZY2 271 aa16.81■□□□□ 0.28
VPS29-209ENST00000551655 KCNV1Q6PIU1 500 aa16.81■□□□□ 0.28
VPS29-209ENST00000551655 NPAS4Q8IUM7 802 aa16.81■□□□□ 0.28
VPS29-209ENST00000551655 GPATCH3Q96I76 525 aa16.81■□□□□ 0.28
VPS29-209ENST00000551655 GPR20Q99678 358 aa16.81■□□□□ 0.28
VPS29-209ENST00000551655 FNDC1Q4ZHG4 1894 aaPredicted RBP16.8■□□□□ 0.28
VPS29-209ENST00000551655 DHX16O60231 1041 aaKnown RBP16.8■□□□□ 0.28
VPS29-209ENST00000551655 WEE2P0C1S8 567 aa16.8■□□□□ 0.28
VPS29-209ENST00000551655 POTEHQ6S545 545 aa16.8■□□□□ 0.28
VPS29-209ENST00000551655 TSHZ1Q6ZSZ6 1077 aa16.8■□□□□ 0.28
VPS29-209ENST00000551655 CYFIP1Q7L576 1253 aa16.8■□□□□ 0.28
VPS29-209ENST00000551655 DNAJB3Q8WWF6 145 aa16.8■□□□□ 0.28
VPS29-209ENST00000551655 JMJD4Q9H9V9 463 aa16.8■□□□□ 0.28
VPS29-209ENST00000551655 ACACBO00763 2458 aa16.79■□□□□ 0.28
VPS29-209ENST00000551655 FSCN2O14926 492 aa16.79■□□□□ 0.28
VPS29-209ENST00000551655 PPP1R11O60927 126 aaPredicted RBP16.79■□□□□ 0.28
VPS29-209ENST00000551655 FGF18O76093 207 aa16.79■□□□□ 0.28
VPS29-209ENST00000551655 CLCN5P51795 746 aa16.79■□□□□ 0.28
VPS29-209ENST00000551655 SEMA3FQ13275 785 aa16.79■□□□□ 0.28
VPS29-209ENST00000551655 SPOUT1Q5T280 376 aaKnown RBP16.79■□□□□ 0.28
VPS29-209ENST00000551655 OTUD7AQ8TE49 926 aaPredicted RBP16.79■□□□□ 0.28
VPS29-209ENST00000551655 USP26Q9BXU7 913 aa16.79■□□□□ 0.28
VPS29-209ENST00000551655 MAF1Q9H063 256 aa16.79■□□□□ 0.28
VPS29-209ENST00000551655 DDX19BQ9UMR2 479 aa16.79■□□□□ 0.28
VPS29-209ENST00000551655 NR2E1Q9Y466 385 aa16.79■□□□□ 0.28
VPS29-209ENST00000551655 R4GN57 208 aa16.79■□□□□ 0.28
VPS29-209ENST00000551655 HIDE1A8MVS5 230 aa16.78■□□□□ 0.28
VPS29-209ENST00000551655 NPR3P17342 541 aa16.78■□□□□ 0.28
VPS29-209ENST00000551655 TMEM184AQ6ZMB5 413 aa16.78■□□□□ 0.28
VPS29-209ENST00000551655 STOX1Q6ZVD7 989 aa16.78■□□□□ 0.28
VPS29-209ENST00000551655 TBC1D10CQ8IV04 446 aa16.78■□□□□ 0.28
VPS29-209ENST00000551655 CCDC105Q8IYK2 499 aa16.78■□□□□ 0.28
VPS29-209ENST00000551655 MIER1Q8N108 512 aa16.78■□□□□ 0.28
VPS29-209ENST00000551655 PI4K2BQ8TCG2 481 aa16.78■□□□□ 0.28
VPS29-209ENST00000551655 TTC14Q96N46 770 aa16.78■□□□□ 0.28
VPS29-209ENST00000551655 CDCA3Q99618 268 aaPredicted RBP16.78■□□□□ 0.28
VPS29-209ENST00000551655 TMEM260Q9NX78 707 aa16.78■□□□□ 0.28
VPS29-209ENST00000551655 LIMD1Q9UGP4 676 aa16.78■□□□□ 0.28
VPS29-209ENST00000551655 NRCAMQ92823 1304 aa16.77■□□□□ 0.28
VPS29-209ENST00000551655 FGAP02671 866 aa16.77■□□□□ 0.28
VPS29-209ENST00000551655 TGFB3P10600 412 aa16.77■□□□□ 0.28
VPS29-209ENST00000551655 SCG2P13521 617 aa16.77■□□□□ 0.28
VPS29-209ENST00000551655 CCND2P30279 289 aa16.77■□□□□ 0.28
VPS29-209ENST00000551655 TMEM62Q0P6H9 643 aa16.77■□□□□ 0.28
VPS29-209ENST00000551655 PUM1Q14671 1186 aaKnown RBP eCLIP16.77■□□□□ 0.28
VPS29-209ENST00000551655 METTL7BQ6UX53 244 aa16.77■□□□□ 0.28
VPS29-209ENST00000551655 FCHSD1Q86WN1 690 aa16.77■□□□□ 0.28
VPS29-209ENST00000551655 THNSL1Q8IYQ7 743 aa16.77■□□□□ 0.28
VPS29-209ENST00000551655 DCLK2Q8N568 766 aa16.77■□□□□ 0.28
VPS29-209ENST00000551655 PNMA1Q8ND90 353 aa16.77■□□□□ 0.28
VPS29-209ENST00000551655 FEZF2Q8TBJ5 459 aa16.77■□□□□ 0.28
VPS29-209ENST00000551655 ZNF215Q9UL58 517 aaPredicted RBP16.77■□□□□ 0.28
VPS29-209ENST00000551655 PCDHB12Q9Y5F1 795 aa16.77■□□□□ 0.28
VPS29-209ENST00000551655 NEDD4P46934 1319 aa16.76■□□□□ 0.27
VPS29-209ENST00000551655 SPTBN2O15020 2390 aa16.76■□□□□ 0.27
VPS29-209ENST00000551655 LMNAP02545 664 aaKnown RBP16.76■□□□□ 0.27
VPS29-209ENST00000551655 STAG3L1P0CL83 205 aa16.76■□□□□ 0.27
VPS29-209ENST00000551655 SRGAP2BP0DMP2 458 aa16.76■□□□□ 0.27
VPS29-209ENST00000551655 AOC1P19801 751 aa16.76■□□□□ 0.27
VPS29-209ENST00000551655 MARK3P27448 753 aa16.76■□□□□ 0.27
VPS29-209ENST00000551655 MRPS6P82932 125 aaKnown RBP16.76■□□□□ 0.27
VPS29-209ENST00000551655 MRPS9P82933 396 aaKnown RBP16.76■□□□□ 0.27
VPS29-209ENST00000551655 GHRHRQ02643 423 aa16.76■□□□□ 0.27
VPS29-209ENST00000551655 UBE3AQ05086 875 aa16.76■□□□□ 0.27
VPS29-209ENST00000551655 KANK3Q6NY19 840 aa16.76■□□□□ 0.27
VPS29-209ENST00000551655 TAF2Q6P1X5 1199 aa16.76■□□□□ 0.27
VPS29-209ENST00000551655 DTWD2Q8NBA8 298 aa16.76■□□□□ 0.27
VPS29-209ENST00000551655 FAM49AQ9H0Q0 323 aaPredicted RBP16.76■□□□□ 0.27
VPS29-209ENST00000551655 TMX1Q9H3N1 280 aa16.76■□□□□ 0.27
VPS29-209ENST00000551655 RTEL1Q9NZ71 1219 aa16.76■□□□□ 0.27
VPS29-209ENST00000551655 TUBE1Q9UJT0 475 aa16.76■□□□□ 0.27
VPS29-209ENST00000551655 LRFN2Q9ULH4 789 aa16.76■□□□□ 0.27
VPS29-209ENST00000551655 MAP1BP46821 2468 aaKnown RBP16.75■□□□□ 0.27
VPS29-209ENST00000551655 CHD6Q8TD26 2715 aa16.75■□□□□ 0.27
VPS29-209ENST00000551655 TBKBP1A7MCY6 615 aa16.75■□□□□ 0.27
VPS29-209ENST00000551655 IGBP1P78318 339 aa16.75■□□□□ 0.27
VPS29-209ENST00000551655 PPFIA1Q13136 1202 aa16.75■□□□□ 0.27
VPS29-209ENST00000551655 ALX1Q15699 326 aa16.75■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms