RNA–Protein interactions for RNA: ENST00000549064.1

LIMA1-204, Transcript of LIM domain and actin binding 1, humanhuman

TSL 2

Gene LIMA1, Length 648 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-204ENST00000549064 LMCD1Q9NZU5 365 aa7.81□□□□□ -1.16
LIMA1-204ENST00000549064 DMGDHQ9UI17 866 aaKnown RBP7.81□□□□□ -1.16
LIMA1-204ENST00000549064 HDAC5Q9UQL6 1122 aa7.81□□□□□ -1.16
LIMA1-204ENST00000549064 FPGT-TNNI3KV9GXZ4 949 aa7.81□□□□□ -1.16
LIMA1-204ENST00000549064 LCTP09848 1927 aa7.81□□□□□ -1.16
LIMA1-204ENST00000549064 SPTBN4Q9H254 2564 aa7.81□□□□□ -1.16
LIMA1-204ENST00000549064 VPS13AQ96RL7 3174 aa7.81□□□□□ -1.16
LIMA1-204ENST00000549064 TNKSO95271 1327 aa7.8□□□□□ -1.16
LIMA1-204ENST00000549064 TTC24A2A3L6 582 aaPredicted RBP7.8□□□□□ -1.16
LIMA1-204ENST00000549064 SMPD1P17405 629 aa7.8□□□□□ -1.16
LIMA1-204ENST00000549064 ATP2B1P20020 1258 aa7.8□□□□□ -1.16
LIMA1-204ENST00000549064 GPC1P35052 558 aa7.8□□□□□ -1.16
LIMA1-204ENST00000549064 GTF2F1P35269 517 aaKnown RBP eCLIP7.8□□□□□ -1.16
LIMA1-204ENST00000549064 RACK1P63244 317 aaKnown RBP7.8□□□□□ -1.16
LIMA1-204ENST00000549064 DEFB103AP81534 67 aa7.8□□□□□ -1.16
LIMA1-204ENST00000549064 CNTN2Q02246 1040 aa7.8□□□□□ -1.16
LIMA1-204ENST00000549064 TCF15Q12870 199 aa7.8□□□□□ -1.16
LIMA1-204ENST00000549064 GNL2Q13823 731 aaKnown RBP7.8□□□□□ -1.16
LIMA1-204ENST00000549064 TRIP4Q15650 581 aaPredicted RBP7.8□□□□□ -1.16
LIMA1-204ENST00000549064 HIF1AQ16665 826 aa7.8□□□□□ -1.16
LIMA1-204ENST00000549064 MEI1Q5TIA1 1274 aa7.8□□□□□ -1.16
LIMA1-204ENST00000549064 ZNF438Q7Z4V0 828 aa7.8□□□□□ -1.16
LIMA1-204ENST00000549064 ZNF598Q86UK7 904 aaKnown RBP7.8□□□□□ -1.16
LIMA1-204ENST00000549064 CMTR1Q8N1G2 835 aaKnown RBP7.8□□□□□ -1.16
LIMA1-204ENST00000549064 ANKRD35Q8N283 1001 aa7.8□□□□□ -1.16
LIMA1-204ENST00000549064 NEK9Q8TD19 979 aa7.8□□□□□ -1.16
LIMA1-204ENST00000549064 SPATA32Q96LK8 384 aa7.8□□□□□ -1.16
LIMA1-204ENST00000549064 MFSD14AQ96MC6 490 aa7.8□□□□□ -1.16
LIMA1-204ENST00000549064 SLF1Q9BQI6 1058 aa7.8□□□□□ -1.16
LIMA1-204ENST00000549064 RAVER2Q9HCJ3 691 aaKnown RBP7.8□□□□□ -1.16
LIMA1-204ENST00000549064 PDGFCQ9NRA1 345 aa7.8□□□□□ -1.16
LIMA1-204ENST00000549064 ZDHHC3Q9NYG2 299 aa7.8□□□□□ -1.16
LIMA1-204ENST00000549064 MUTYHQ9UIF7 546 aa7.8□□□□□ -1.16
LIMA1-204ENST00000549064 DBNLQ9UJU6 430 aaKnown RBP7.8□□□□□ -1.16
LIMA1-204ENST00000549064 DDX41Q9UJV9 622 aaKnown RBP7.8□□□□□ -1.16
LIMA1-204ENST00000549064 NOB1Q9ULX3 412 aaKnown RBP7.8□□□□□ -1.16
LIMA1-204ENST00000549064 INPP5FQ9Y2H2 1132 aa7.8□□□□□ -1.16
LIMA1-204ENST00000549064 GREB1LQ9C091 1923 aaPredicted RBP7.8□□□□□ -1.16
LIMA1-204ENST00000549064 MYH4Q9Y623 1939 aa7.8□□□□□ -1.16
LIMA1-204ENST00000549064 SCN10AQ9Y5Y9 1956 aa7.79□□□□□ -1.16
LIMA1-204ENST00000549064 CYP2D7A0A087X1C5 515 aa7.79□□□□□ -1.16
LIMA1-204ENST00000549064 IQCF3P0C7M6 154 aa7.79□□□□□ -1.16
LIMA1-204ENST00000549064 RNF144AP50876 292 aaPredicted RBP7.79□□□□□ -1.16
LIMA1-204ENST00000549064 ARSDP51689 593 aa7.79□□□□□ -1.16
LIMA1-204ENST00000549064 WDR5P61964 334 aaKnown RBP7.79□□□□□ -1.16
LIMA1-204ENST00000549064 EP400NLQ6ZTU2 488 aa7.79□□□□□ -1.16
LIMA1-204ENST00000549064 EEPD1Q7L9B9 569 aa7.79□□□□□ -1.16
LIMA1-204ENST00000549064 CERS3Q8IU89 383 aa7.79□□□□□ -1.16
LIMA1-204ENST00000549064 ZNF654Q8IZM8 581 aa7.79□□□□□ -1.16
LIMA1-204ENST00000549064 SNX29Q8TEQ0 813 aa7.79□□□□□ -1.16
LIMA1-204ENST00000549064 PPIL4Q8WUA2 492 aaKnown RBP eCLIP7.79□□□□□ -1.16
LIMA1-204ENST00000549064 ZNF512BQ96KM6 892 aaPredicted RBP7.79□□□□□ -1.16
LIMA1-204ENST00000549064 AP5M1Q9H0R1 490 aa7.79□□□□□ -1.16
LIMA1-204ENST00000549064 CCDC8Q9H0W5 538 aaPredicted RBP7.79□□□□□ -1.16
LIMA1-204ENST00000549064 POLMQ9NP87 494 aaPredicted RBP7.79□□□□□ -1.16
LIMA1-204ENST00000549064 DCP1AQ9NPI6 582 aaPredicted RBP7.79□□□□□ -1.16
LIMA1-204ENST00000549064 HOMER2Q9NSB8 354 aa7.79□□□□□ -1.16
LIMA1-204ENST00000549064 GGT7Q9UJ14 662 aa7.79□□□□□ -1.16
LIMA1-204ENST00000549064 MYO7AQ13402 2215 aa7.79□□□□□ -1.16
LIMA1-204ENST00000549064 NLRC5Q86WI3 1866 aa7.79□□□□□ -1.16
LIMA1-204ENST00000549064 LINC01553A4QN01 128 aa7.78□□□□□ -1.16
LIMA1-204ENST00000549064 ZEB2O60315 1214 aa7.78□□□□□ -1.16
LIMA1-204ENST00000549064 PHACTR2O75167 634 aa7.78□□□□□ -1.16
LIMA1-204ENST00000549064 GNAI3P08754 354 aa7.78□□□□□ -1.16
LIMA1-204ENST00000549064 SUPT20HL2P0C7V6 817 aa7.78□□□□□ -1.16
LIMA1-204ENST00000549064 RFC2P35250 354 aa7.78□□□□□ -1.16
LIMA1-204ENST00000549064 CTSOP43234 321 aaPredicted RBP7.78□□□□□ -1.16
LIMA1-204ENST00000549064 KCNJ6P48051 423 aa7.78□□□□□ -1.16
LIMA1-204ENST00000549064 CDK8P49336 464 aa7.78□□□□□ -1.16
LIMA1-204ENST00000549064 ERVK-21P61565 698 aa7.78□□□□□ -1.16
LIMA1-204ENST00000549064 POU4F2Q12837 409 aa7.78□□□□□ -1.16
LIMA1-204ENST00000549064 TCTN1Q2MV58 587 aa7.78□□□□□ -1.16
LIMA1-204ENST00000549064 ALDH1L2Q3SY69 923 aa7.78□□□□□ -1.16
LIMA1-204ENST00000549064 FAM47CQ5HY64 1035 aa7.78□□□□□ -1.16
LIMA1-204ENST00000549064 IER5Q5VY09 327 aa7.78□□□□□ -1.16
LIMA1-204ENST00000549064 FAM117BQ6P1L5 589 aa7.78□□□□□ -1.16
LIMA1-204ENST00000549064 HS2ST1Q7LGA3 356 aa7.78□□□□□ -1.16
LIMA1-204ENST00000549064 ADHFE1Q8IWW8 467 aa7.78□□□□□ -1.16
LIMA1-204ENST00000549064 FBXO16Q8IX29 292 aaPredicted RBP7.78□□□□□ -1.16
LIMA1-204ENST00000549064 LCORLQ8N3X6 602 aa7.78□□□□□ -1.16
LIMA1-204ENST00000549064 TGS1Q96RS0 853 aaKnown RBP7.78□□□□□ -1.16
LIMA1-204ENST00000549064 C17orf80Q9BSJ5 609 aa7.78□□□□□ -1.16
LIMA1-204ENST00000549064 SEZ6LQ9BYH1 1024 aa7.78□□□□□ -1.16
LIMA1-204ENST00000549064 CRNKL1Q9BZJ0 848 aaKnown RBP7.78□□□□□ -1.16
LIMA1-204ENST00000549064 LNPKQ9C0E8 428 aa7.78□□□□□ -1.16
LIMA1-204ENST00000549064 GPR108Q9NPR9 543 aa7.78□□□□□ -1.16
LIMA1-204ENST00000549064 SWAP70Q9UH65 585 aa7.78□□□□□ -1.16
LIMA1-204ENST00000549064 ZFHX2Q9C0A1 2572 aaPredicted RBP7.77□□□□□ -1.16
LIMA1-204ENST00000549064 COL4A6Q14031 1691 aa7.77□□□□□ -1.17
LIMA1-204ENST00000549064 ATP2A1O14983 1001 aa7.77□□□□□ -1.17
LIMA1-204ENST00000549064 PRKAB2O43741 272 aa7.77□□□□□ -1.17
LIMA1-204ENST00000549064 BAIAP3O94812 1187 aa7.77□□□□□ -1.17
LIMA1-204ENST00000549064 MYL3P08590 195 aa7.77□□□□□ -1.17
LIMA1-204ENST00000549064 USP17L7P0C7H9 530 aa7.77□□□□□ -1.17
LIMA1-204ENST00000549064 ATP4AP20648 1035 aa7.77□□□□□ -1.17
LIMA1-204ENST00000549064 OS9Q13438 667 aaPredicted RBP7.77□□□□□ -1.17
LIMA1-204ENST00000549064 GPNMBQ14956 572 aa7.77□□□□□ -1.17
LIMA1-204ENST00000549064 TAPT1Q6NXT6 567 aa7.77□□□□□ -1.17
LIMA1-204ENST00000549064 GIMAP6Q6P9H5 292 aa7.77□□□□□ -1.17
LIMA1-204ENST00000549064 LRRC69Q6ZNQ3 347 aa7.77□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms