RNA–Protein interactions for RNA: ENST00000546820.5

PTCH1-213, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 864 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-213ENST00000546820 ERMNQ8TAM6 284 aa15.49■□□□□ 0.07
PTCH1-213ENST00000546820 AFAP1L1Q8TED9 768 aa15.49■□□□□ 0.07
PTCH1-213ENST00000546820 DPF3Q92784 378 aa15.49■□□□□ 0.07
PTCH1-213ENST00000546820 ATP6V0A1Q93050 837 aa15.49■□□□□ 0.07
PTCH1-213ENST00000546820 TSHZ2Q9NRE2 1034 aa15.49■□□□□ 0.07
PTCH1-213ENST00000546820 VAV3Q9UKW4 847 aa15.49■□□□□ 0.07
PTCH1-213ENST00000546820 TELO2Q9Y4R8 837 aa15.49■□□□□ 0.07
PTCH1-213ENST00000546820 BRD1O95696 1058 aa15.48■□□□□ 0.07
PTCH1-213ENST00000546820 CDK7P50613 346 aa15.48■□□□□ 0.07
PTCH1-213ENST00000546820 ATP2C1P98194 919 aaPredicted RBP15.48■□□□□ 0.07
PTCH1-213ENST00000546820 SNX17Q15036 470 aa15.48■□□□□ 0.07
PTCH1-213ENST00000546820 SF3A1Q15459 793 aaKnown RBP15.48■□□□□ 0.07
PTCH1-213ENST00000546820 TOX2Q96NM4 488 aa15.48■□□□□ 0.07
PTCH1-213ENST00000546820 NRBP2Q9NSY0 501 aa15.48■□□□□ 0.07
PTCH1-213ENST00000546820 GABBR1Q9UBS5 961 aa15.48■□□□□ 0.07
PTCH1-213ENST00000546820 CFAP45Q9UL16 551 aa15.48■□□□□ 0.07
PTCH1-213ENST00000546820 ATP11BQ9Y2G3 1177 aa15.48■□□□□ 0.07
PTCH1-213ENST00000546820 MAFBQ9Y5Q3 323 aaPredicted RBP15.48■□□□□ 0.07
PTCH1-213ENST00000546820 EVI5O60447 810 aa15.47■□□□□ 0.07
PTCH1-213ENST00000546820 P4HBP07237 508 aaKnown RBP15.47■□□□□ 0.07
PTCH1-213ENST00000546820 FXR2P51116 673 aaKnown RBP eCLIP15.47■□□□□ 0.07
PTCH1-213ENST00000546820 RTP1P59025 263 aa15.47■□□□□ 0.07
PTCH1-213ENST00000546820 PSMC5P62195 406 aa15.47■□□□□ 0.07
PTCH1-213ENST00000546820 PKP1Q13835 747 aa15.47■□□□□ 0.07
PTCH1-213ENST00000546820 LRRC26Q2I0M4 334 aa15.47■□□□□ 0.07
PTCH1-213ENST00000546820 FAM173BQ6P4H8 233 aa15.47■□□□□ 0.07
PTCH1-213ENST00000546820 ANKRD33Q7Z3H0 272 aa15.47■□□□□ 0.07
PTCH1-213ENST00000546820 SESTD1Q86VW0 696 aa15.47■□□□□ 0.07
PTCH1-213ENST00000546820 TRIM50Q86XT4 487 aa15.47■□□□□ 0.07
PTCH1-213ENST00000546820 CCDC60Q8IWA6 550 aaPredicted RBP15.47■□□□□ 0.07
PTCH1-213ENST00000546820 PCYT2Q99447 389 aa15.47■□□□□ 0.07
PTCH1-213ENST00000546820 RNPEPQ9H4A4 650 aa15.47■□□□□ 0.07
PTCH1-213ENST00000546820 GRIN2DO15399 1336 aa15.46■□□□□ 0.07
PTCH1-213ENST00000546820 NRCAMQ92823 1304 aa15.46■□□□□ 0.07
PTCH1-213ENST00000546820 POTEB3A0JP26 581 aa15.46■□□□□ 0.07
PTCH1-213ENST00000546820 C17orf102A2RUQ5 167 aa15.46■□□□□ 0.07
PTCH1-213ENST00000546820 RRN3P2A6NIE6 340 aa15.46■□□□□ 0.07
PTCH1-213ENST00000546820 EML1O00423 815 aa15.46■□□□□ 0.07
PTCH1-213ENST00000546820 HBP1O60381 514 aa15.46■□□□□ 0.07
PTCH1-213ENST00000546820 PQBP1O60828 265 aaKnown RBP15.46■□□□□ 0.07
PTCH1-213ENST00000546820 MARK3P27448 753 aa15.46■□□□□ 0.07
PTCH1-213ENST00000546820 QARSP47897 775 aaKnown RBP15.46■□□□□ 0.07
PTCH1-213ENST00000546820 CEBPZQ03701 1054 aaKnown RBP15.46■□□□□ 0.07
PTCH1-213ENST00000546820 TLE2Q04725 743 aa15.46■□□□□ 0.07
PTCH1-213ENST00000546820 SPIRE1Q08AE8 756 aa15.46■□□□□ 0.07
PTCH1-213ENST00000546820 POTEBQ6S5H4 581 aa15.46■□□□□ 0.07
PTCH1-213ENST00000546820 NEK9Q8TD19 979 aa15.46■□□□□ 0.07
PTCH1-213ENST00000546820 FAM167AQ96KS9 214 aa15.46■□□□□ 0.07
PTCH1-213ENST00000546820 EIF2AK1Q9BQI3 630 aaKnown RBP15.46■□□□□ 0.07
PTCH1-213ENST00000546820 TFIP11Q9UBB9 837 aaKnown RBP15.46■□□□□ 0.07
PTCH1-213ENST00000546820 HDAC6Q9UBN7 1215 aa15.46■□□□□ 0.07
PTCH1-213ENST00000546820 LRWD1Q9UFC0 647 aa15.46■□□□□ 0.07
PTCH1-213ENST00000546820 CIZ1Q9ULV3 898 aaPredicted RBP15.46■□□□□ 0.07
PTCH1-213ENST00000546820 TRPC6Q9Y210 931 aa15.46■□□□□ 0.07
PTCH1-213ENST00000546820 NOD1Q9Y239 953 aa15.46■□□□□ 0.07
PTCH1-213ENST00000546820 NR2E3Q9Y5X4 410 aa15.46■□□□□ 0.07
PTCH1-213ENST00000546820 CLIC4Q9Y696 253 aa15.46■□□□□ 0.07
PTCH1-213ENST00000546820 SMIM10L2AP0DMW4 78 aa15.45■□□□□ 0.06
PTCH1-213ENST00000546820 SMIM10L2BP0DMW5 78 aa15.45■□□□□ 0.06
PTCH1-213ENST00000546820 MLLT1Q03111 559 aaPredicted RBP15.45■□□□□ 0.06
PTCH1-213ENST00000546820 SLC39A14Q15043 492 aa15.45■□□□□ 0.06
PTCH1-213ENST00000546820 PLCB4Q15147 1175 aa15.45■□□□□ 0.06
PTCH1-213ENST00000546820 STK38Q15208 465 aa15.45■□□□□ 0.06
PTCH1-213ENST00000546820 TRIM60Q495X7 471 aa15.45■□□□□ 0.06
PTCH1-213ENST00000546820 ATP8B4Q8TF62 1192 aa15.45■□□□□ 0.06
PTCH1-213ENST00000546820 BBXQ8WY36 941 aaPredicted RBP15.45■□□□□ 0.06
PTCH1-213ENST00000546820 USP28Q96RU2 1077 aa15.45■□□□□ 0.06
PTCH1-213ENST00000546820 ZSWIM4Q9H7M6 989 aa15.45■□□□□ 0.06
PTCH1-213ENST00000546820 PRKAG2Q9UGJ0 569 aa15.45■□□□□ 0.06
PTCH1-213ENST00000546820 GTF2IRD1Q9UHL9 959 aa15.45■□□□□ 0.06
PTCH1-213ENST00000546820 SCN10AQ9Y5Y9 1956 aa15.44■□□□□ 0.06
PTCH1-213ENST00000546820 VWA3AA6NCI4 1184 aa15.44■□□□□ 0.06
PTCH1-213ENST00000546820 POTEMA6NI47 508 aa15.44■□□□□ 0.06
PTCH1-213ENST00000546820 PPFIA1Q13136 1202 aa15.44■□□□□ 0.06
PTCH1-213ENST00000546820 PTGISQ16647 500 aa15.44■□□□□ 0.06
PTCH1-213ENST00000546820 FOXD4L6Q3SYB3 417 aaPredicted RBP15.44■□□□□ 0.06
PTCH1-213ENST00000546820 XKR3Q5GH77 459 aa15.44■□□□□ 0.06
PTCH1-213ENST00000546820 ZNF484Q5JVG2 852 aa15.44■□□□□ 0.06
PTCH1-213ENST00000546820 HAUS3Q68CZ6 603 aa15.44■□□□□ 0.06
PTCH1-213ENST00000546820 FOXD4L3Q6VB84 417 aaPredicted RBP15.44■□□□□ 0.06
PTCH1-213ENST00000546820 OTUD6AQ7L8S5 288 aa15.44■□□□□ 0.06
PTCH1-213ENST00000546820 TPH2Q8IWU9 490 aa15.44■□□□□ 0.06
PTCH1-213ENST00000546820 FAM126BQ8IXS8 530 aa15.44■□□□□ 0.06
PTCH1-213ENST00000546820 IGSF22Q8N9C0 903 aa15.44■□□□□ 0.06
PTCH1-213ENST00000546820 BANK1Q8NDB2 785 aa15.44■□□□□ 0.06
PTCH1-213ENST00000546820 DYDC2Q96IM9 177 aa15.44■□□□□ 0.06
PTCH1-213ENST00000546820 AK8Q96MA6 479 aa15.44■□□□□ 0.06
PTCH1-213ENST00000546820 IPO9Q96P70 1041 aaKnown RBP15.44■□□□□ 0.06
PTCH1-213ENST00000546820 HSD17B14Q9BPX1 270 aa15.44■□□□□ 0.06
PTCH1-213ENST00000546820 TUFT1Q9NNX1 390 aa15.44■□□□□ 0.06
PTCH1-213ENST00000546820 SETD4Q9NVD3 440 aa15.44■□□□□ 0.06
PTCH1-213ENST00000546820 ZDHHC9Q9Y397 364 aa15.44■□□□□ 0.06
PTCH1-213ENST00000546820 IGSF9BQ9UPX0 1349 aa15.43■□□□□ 0.06
PTCH1-213ENST00000546820 DDX11L8A8MPP1 907 aa15.43■□□□□ 0.06
PTCH1-213ENST00000546820 SLITRK3O94933 977 aa15.43■□□□□ 0.06
PTCH1-213ENST00000546820 YEATS4O95619 227 aa15.43■□□□□ 0.06
PTCH1-213ENST00000546820 CD4P01730 458 aa15.43■□□□□ 0.06
PTCH1-213ENST00000546820 OATP04181 439 aa15.43■□□□□ 0.06
PTCH1-213ENST00000546820 CLTBP09497 229 aa15.43■□□□□ 0.06
PTCH1-213ENST00000546820 INSRRP14616 1297 aa15.43■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms