RNA–Protein interactions for RNA: ENST00000545707.5

LDLR-204, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,429 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-204ENST00000545707 KCNK3O14649 394 aa17.35■□□□□ 0.37
LDLR-204ENST00000545707 MYBP10242 640 aa17.35■□□□□ 0.37
LDLR-204ENST00000545707 CYP4A11Q02928 519 aa17.35■□□□□ 0.37
LDLR-204ENST00000545707 DDR1Q08345 913 aa17.35■□□□□ 0.37
LDLR-204ENST00000545707 SLC20A2Q08357 652 aa17.35■□□□□ 0.37
LDLR-204ENST00000545707 USH1GQ495M9 461 aa17.35■□□□□ 0.37
LDLR-204ENST00000545707 DCAF17Q5H9S7 520 aaPredicted RBP17.35■□□□□ 0.37
LDLR-204ENST00000545707 IRF2BP2Q7Z5L9 587 aa17.35■□□□□ 0.37
LDLR-204ENST00000545707 SFR1Q86XK3 245 aa17.35■□□□□ 0.37
LDLR-204ENST00000545707 BCAS4Q8TDM0 211 aa17.35■□□□□ 0.37
LDLR-204ENST00000545707 CAVIN3Q969G5 261 aa17.35■□□□□ 0.37
LDLR-204ENST00000545707 GDF3Q9NR23 364 aa17.35■□□□□ 0.37
LDLR-204ENST00000545707 KCNQ5Q9NR82 932 aa17.35■□□□□ 0.37
LDLR-204ENST00000545707 AIPL1Q9NZN9 384 aa17.35■□□□□ 0.37
LDLR-204ENST00000545707 GRIN2DO15399 1336 aa17.35■□□□□ 0.37
LDLR-204ENST00000545707 OPA1O60313 960 aa17.35■□□□□ 0.37
LDLR-204ENST00000545707 GNA14O95837 355 aa17.35■□□□□ 0.37
LDLR-204ENST00000545707 EEF2P13639 858 aaKnown RBP17.35■□□□□ 0.37
LDLR-204ENST00000545707 NOP2P46087 812 aaKnown RBP17.35■□□□□ 0.37
LDLR-204ENST00000545707 CORO7P57737 925 aa17.35■□□□□ 0.37
LDLR-204ENST00000545707 KCNA1Q09470 495 aa17.35■□□□□ 0.37
LDLR-204ENST00000545707 PDCLQ13371 301 aa17.35■□□□□ 0.37
LDLR-204ENST00000545707 GIT2Q14161 759 aa17.35■□□□□ 0.37
LDLR-204ENST00000545707 GJB7Q6PEY0 223 aa17.35■□□□□ 0.37
LDLR-204ENST00000545707 INPP4AQ96PE3 977 aaPredicted RBP17.35■□□□□ 0.37
LDLR-204ENST00000545707 REEP2Q9BRK0 252 aa17.35■□□□□ 0.37
LDLR-204ENST00000545707 TSKSQ9UJT2 592 aa17.35■□□□□ 0.37
LDLR-204ENST00000545707 AJAP1Q9UKB5 411 aaPredicted RBP17.35■□□□□ 0.37
LDLR-204ENST00000545707 SAMM50Q9Y512 469 aa17.35■□□□□ 0.37
LDLR-204ENST00000545707 PCDHGC5Q9Y5F6 944 aa17.35■□□□□ 0.37
LDLR-204ENST00000545707 ZNF233A6NK53 670 aa17.34■□□□□ 0.37
LDLR-204ENST00000545707 SFI1A8K8P3 1242 aa17.34■□□□□ 0.37
LDLR-204ENST00000545707 MEIS2O14770 477 aa17.34■□□□□ 0.37
LDLR-204ENST00000545707 RAD51CO43502 376 aa17.34■□□□□ 0.37
LDLR-204ENST00000545707 CASP4P49662 377 aa17.34■□□□□ 0.37
LDLR-204ENST00000545707 MARSP56192 900 aaKnown RBP17.34■□□□□ 0.37
LDLR-204ENST00000545707 CDC37Q16543 378 aaPredicted RBP17.34■□□□□ 0.37
LDLR-204ENST00000545707 TCERG1LQ5VWI1 586 aa17.34■□□□□ 0.37
LDLR-204ENST00000545707 ALS2CLQ60I27 953 aa17.34■□□□□ 0.37
LDLR-204ENST00000545707 FOXR2Q6PJQ5 311 aa17.34■□□□□ 0.37
LDLR-204ENST00000545707 CYP2W1Q8TAV3 490 aa17.34■□□□□ 0.37
LDLR-204ENST00000545707 SPAG5Q96R06 1193 aa17.34■□□□□ 0.37
LDLR-204ENST00000545707 NHSQ6T4R5 1651 aa17.34■□□□□ 0.37
LDLR-204ENST00000545707 CLIC2O15247 247 aa17.33■□□□□ 0.37
LDLR-204ENST00000545707 UCHL3P15374 230 aa17.33■□□□□ 0.37
LDLR-204ENST00000545707 NNTQ13423 1086 aa17.33■□□□□ 0.37
LDLR-204ENST00000545707 APOBEC3HQ6NTF7 200 aaKnown RBP17.33■□□□□ 0.37
LDLR-204ENST00000545707 DPY19L2P1Q6NXN4 242 aa17.33■□□□□ 0.37
LDLR-204ENST00000545707 RBM46Q8TBY0 533 aaKnown RBP17.33■□□□□ 0.37
LDLR-204ENST00000545707 LUC7LQ9NQ29 371 aaKnown RBP17.33■□□□□ 0.37
LDLR-204ENST00000545707 ARMCX3Q9UH62 379 aaPredicted RBP17.33■□□□□ 0.37
LDLR-204ENST00000545707 SWAP70Q9UH65 585 aa17.33■□□□□ 0.37
LDLR-204ENST00000545707 USP21Q9UK80 565 aa17.33■□□□□ 0.37
LDLR-204ENST00000545707 AKAP3O75969 853 aa17.33■□□□□ 0.36
LDLR-204ENST00000545707 SPATA31C1P0DKV0 1188 aa17.33■□□□□ 0.36
LDLR-204ENST00000545707 POLD1P28340 1107 aa17.33■□□□□ 0.36
LDLR-204ENST00000545707 ARHGAP4P98171 946 aa17.33■□□□□ 0.36
LDLR-204ENST00000545707 SPIRE1Q08AE8 756 aa17.33■□□□□ 0.36
LDLR-204ENST00000545707 GLE1Q53GS7 698 aaKnown RBP17.33■□□□□ 0.36
LDLR-204ENST00000545707 CFAP58Q5T655 872 aa17.33■□□□□ 0.36
LDLR-204ENST00000545707 PIK3R5Q8WYR1 880 aa17.33■□□□□ 0.36
LDLR-204ENST00000545707 RUBCNQ92622 972 aa17.33■□□□□ 0.36
LDLR-204ENST00000545707 ZC3H12CQ9C0D7 883 aaKnown RBP17.33■□□□□ 0.36
LDLR-204ENST00000545707 FAM86B1E9PN63 330 aa17.32■□□□□ 0.36
LDLR-204ENST00000545707 PPEF1O14829 653 aaPredicted RBP17.32■□□□□ 0.36
LDLR-204ENST00000545707 EIF3HO15372 352 aaKnown RBP eCLIP17.32■□□□□ 0.36
LDLR-204ENST00000545707 FAM86B2P0C5J1 330 aa17.32■□□□□ 0.36
LDLR-204ENST00000545707 MAGEA9P43362 315 aa17.32■□□□□ 0.36
LDLR-204ENST00000545707 SLFN13Q68D06 897 aa17.32■□□□□ 0.36
LDLR-204ENST00000545707 PACS2Q86VP3 889 aa17.32■□□□□ 0.36
LDLR-204ENST00000545707 IQCKQ8N0W5 287 aa17.32■□□□□ 0.36
LDLR-204ENST00000545707 AP1M1Q9BXS5 423 aa17.32■□□□□ 0.36
LDLR-204ENST00000545707 FRMD3A2A2Y4 597 aa17.32■□□□□ 0.36
LDLR-204ENST00000545707 HLA-DOAP06340 250 aa17.32■□□□□ 0.36
LDLR-204ENST00000545707 PON1P27169 355 aa17.32■□□□□ 0.36
LDLR-204ENST00000545707 TNFRSF8P28908 595 aa17.32■□□□□ 0.36
LDLR-204ENST00000545707 HOXA13P31271 388 aaPredicted RBP17.32■□□□□ 0.36
LDLR-204ENST00000545707 USP11P51784 963 aa17.32■□□□□ 0.36
LDLR-204ENST00000545707 EXOC3L4Q17RC7 722 aa17.32■□□□□ 0.36
LDLR-204ENST00000545707 KNOP1Q1ED39 458 aaKnown RBP17.32■□□□□ 0.36
LDLR-204ENST00000545707 ARHGAP27Q6ZUM4 889 aa17.32■□□□□ 0.36
LDLR-204ENST00000545707 DDX42Q86XP3 938 aaKnown RBP eCLIP17.32■□□□□ 0.361e-7■■■□□ 15
LDLR-204ENST00000545707 USP38Q8NB14 1042 aa17.32■□□□□ 0.36
LDLR-204ENST00000545707 ETNPPLQ8TBG4 499 aa17.32■□□□□ 0.36
LDLR-204ENST00000545707 RNF14Q9UBS8 474 aa17.32■□□□□ 0.36
LDLR-204ENST00000545707 DDTLA6NHG4 134 aaPredicted RBP17.31■□□□□ 0.36
LDLR-204ENST00000545707 CEP104O60308 925 aa17.31■□□□□ 0.36
LDLR-204ENST00000545707 ZEB2O60315 1214 aa17.31■□□□□ 0.36
LDLR-204ENST00000545707 HOXA10P31260 410 aaPredicted RBP17.31■□□□□ 0.36
LDLR-204ENST00000545707 PAK2Q13177 524 aa17.31■□□□□ 0.36
LDLR-204ENST00000545707 RPS6KA1Q15418 735 aa17.31■□□□□ 0.36
LDLR-204ENST00000545707 COA1Q9GZY4 146 aa17.31■□□□□ 0.36
LDLR-204ENST00000545707 BHMT2Q9H2M3 363 aa17.31■□□□□ 0.36
LDLR-204ENST00000545707 RGL1Q9NZL6 768 aa17.31■□□□□ 0.36
LDLR-204ENST00000545707 DNM3Q9UQ16 869 aa17.31■□□□□ 0.36
LDLR-204ENST00000545707 AFPP02771 609 aaKnown RBP17.31■□□□□ 0.36
LDLR-204ENST00000545707 EPB41P11171 864 aaKnown RBP17.31■□□□□ 0.36
LDLR-204ENST00000545707 EDRF1Q3B7T1 1238 aa17.31■□□□□ 0.36
LDLR-204ENST00000545707 ALKBH5Q6P6C2 394 aaKnown RBP17.31■□□□□ 0.36
LDLR-204ENST00000545707 ZC3H3Q8IXZ2 948 aaKnown RBP17.31■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms