RNA–Protein interactions for RNA: ENST00000545694.1

SYNE1-239, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 3

Gene SYNE1, Length 526 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-239ENST00000545694 CCDC150Q8NCX0 1101 aa6.94□□□□□ -1.3
SYNE1-239ENST00000545694 ERMNQ8TAM6 284 aa6.94□□□□□ -1.3
SYNE1-239ENST00000545694 NOC3LQ8WTT2 800 aaKnown RBP6.94□□□□□ -1.3
SYNE1-239ENST00000545694 CRYGNQ8WXF5 182 aa6.94□□□□□ -1.3
SYNE1-239ENST00000545694 FEZ1Q99689 392 aa6.94□□□□□ -1.3
SYNE1-239ENST00000545694 C7orf25Q9BPX7 421 aa6.94□□□□□ -1.3
SYNE1-239ENST00000545694 TMEM60Q9H2L4 133 aa6.94□□□□□ -1.3
SYNE1-239ENST00000545694 CPVLQ9H3G5 476 aa6.94□□□□□ -1.3
SYNE1-239ENST00000545694 ENAMQ9NRM1 1142 aa6.94□□□□□ -1.3
SYNE1-239ENST00000545694 LRWD1Q9UFC0 647 aa6.94□□□□□ -1.3
SYNE1-239ENST00000545694 PCDHA12Q9UN75 941 aa6.94□□□□□ -1.3
SYNE1-239ENST00000545694 DYRK1BQ9Y463 629 aa6.94□□□□□ -1.3
SYNE1-239ENST00000545694 PARP14Q460N5 1801 aa6.94□□□□□ -1.3
SYNE1-239ENST00000545694 A0A087X0B3 334 aa6.93□□□□□ -1.3
SYNE1-239ENST00000545694 BICDL2A1A5D9 508 aa6.93□□□□□ -1.3
SYNE1-239ENST00000545694 GCOM1H8Y6P7 765 aaPredicted RBP6.93□□□□□ -1.3
SYNE1-239ENST00000545694 BIN1O00499 593 aa6.93□□□□□ -1.3
SYNE1-239ENST00000545694 RHOBTB3O94955 611 aa6.93□□□□□ -1.3
SYNE1-239ENST00000545694 KIF20AO95235 890 aa6.93□□□□□ -1.3
SYNE1-239ENST00000545694 TUBB4AP04350 444 aa6.93□□□□□ -1.3
SYNE1-239ENST00000545694 RPN1P04843 607 aaKnown RBP6.93□□□□□ -1.3
SYNE1-239ENST00000545694 ICAM1P05362 532 aa6.93□□□□□ -1.3
SYNE1-239ENST00000545694 POLR2MP0CAP2 368 aa6.93□□□□□ -1.3
SYNE1-239ENST00000545694 LMOD1P29536 600 aaPredicted RBP6.93□□□□□ -1.3
SYNE1-239ENST00000545694 KCNJ6P48051 423 aa6.93□□□□□ -1.3
SYNE1-239ENST00000545694 OAZ1P54368 228 aa6.93□□□□□ -1.3
SYNE1-239ENST00000545694 ARHGAP4P98171 946 aa6.93□□□□□ -1.3
SYNE1-239ENST00000545694 FANCCQ00597 558 aa6.93□□□□□ -1.3
SYNE1-239ENST00000545694 SETQ01105 290 aaPredicted RBP6.93□□□□□ -1.3
SYNE1-239ENST00000545694 RRP1BQ14684 758 aaKnown RBP6.93□□□□□ -1.3
SYNE1-239ENST00000545694 FILIP1LQ4L180 1135 aa6.93□□□□□ -1.3
SYNE1-239ENST00000545694 NOL9Q5SY16 702 aaKnown RBP6.93□□□□□ -1.3
SYNE1-239ENST00000545694 XRRA1Q6P2D8 792 aa6.93□□□□□ -1.3
SYNE1-239ENST00000545694 SV2BQ7L1I2 683 aa6.93□□□□□ -1.3
SYNE1-239ENST00000545694 NIPA1Q7RTP0 329 aa6.93□□□□□ -1.3
SYNE1-239ENST00000545694 DHTKD1Q96HY7 919 aaPredicted RBP6.93□□□□□ -1.3
SYNE1-239ENST00000545694 C12orf42Q96LP6 360 aa6.93□□□□□ -1.3
SYNE1-239ENST00000545694 SLF1Q9BQI6 1058 aa6.93□□□□□ -1.3
SYNE1-239ENST00000545694 GRIP2Q9C0E4 1043 aa6.93□□□□□ -1.3
SYNE1-239ENST00000545694 TTC12Q9H892 705 aaPredicted RBP6.93□□□□□ -1.3
SYNE1-239ENST00000545694 KCNMB3Q9NPA1 279 aa6.93□□□□□ -1.3
SYNE1-239ENST00000545694 PICK1Q9NRD5 415 aa6.93□□□□□ -1.3
SYNE1-239ENST00000545694 GPRC5DQ9NZD1 345 aa6.93□□□□□ -1.3
SYNE1-239ENST00000545694 RWDD2AQ9UIY3 292 aa6.93□□□□□ -1.3
SYNE1-239ENST00000545694 HACL1Q9UJ83 578 aa6.93□□□□□ -1.3
SYNE1-239ENST00000545694 PCDHB11Q9Y5F2 797 aa6.93□□□□□ -1.3
SYNE1-239ENST00000545694 GJA3Q9Y6H8 435 aa6.93□□□□□ -1.3
SYNE1-239ENST00000545694 GOLGB1Q14789 3259 aaKnown RBP6.93□□□□□ -1.3
SYNE1-239ENST00000545694 MYPNQ86TC9 1320 aa6.93□□□□□ -1.3
SYNE1-239ENST00000545694 PHIPQ8WWQ0 1821 aa6.92□□□□□ -1.3
SYNE1-239ENST00000545694 LRRC10BA6NIK2 292 aa6.92□□□□□ -1.3
SYNE1-239ENST00000545694 PSMA7O14818 248 aa6.92□□□□□ -1.3
SYNE1-239ENST00000545694 ADAMTS3O15072 1205 aa6.92□□□□□ -1.3
SYNE1-239ENST00000545694 AP5Z1O43299 807 aa6.92□□□□□ -1.3
SYNE1-239ENST00000545694 CCP110O43303 1012 aa6.92□□□□□ -1.3
SYNE1-239ENST00000545694 FGFR1OPO95684 399 aaKnown RBP6.92□□□□□ -1.3
SYNE1-239ENST00000545694 SERPINC1P01008 464 aa6.92□□□□□ -1.3
SYNE1-239ENST00000545694 BCRP11274 1271 aa6.92□□□□□ -1.3
SYNE1-239ENST00000545694 ZNF18P17022 549 aa6.92□□□□□ -1.3
SYNE1-239ENST00000545694 CDK11BP21127 795 aaKnown RBP6.92□□□□□ -1.3
SYNE1-239ENST00000545694 TECP42680 631 aa6.92□□□□□ -1.3
SYNE1-239ENST00000545694 TXKP42681 527 aa6.92□□□□□ -1.3
SYNE1-239ENST00000545694 AFMP43652 599 aa6.92□□□□□ -1.3
SYNE1-239ENST00000545694 UBASH3AP57075 661 aa6.92□□□□□ -1.3
SYNE1-239ENST00000545694 CUL4BQ13620 913 aa6.92□□□□□ -1.3
SYNE1-239ENST00000545694 KARSQ15046 597 aaKnown RBP6.92□□□□□ -1.3
SYNE1-239ENST00000545694 TKFCQ3LXA3 575 aa6.92□□□□□ -1.3
SYNE1-239ENST00000545694 TMEM119Q4V9L6 283 aa6.92□□□□□ -1.3
SYNE1-239ENST00000545694 NAALADL2Q58DX5 795 aa6.92□□□□□ -1.3
SYNE1-239ENST00000545694 FAM83BQ5T0W9 1011 aa6.92□□□□□ -1.3
SYNE1-239ENST00000545694 PDZRN4Q6ZMN7 1036 aaPredicted RBP6.92□□□□□ -1.3
SYNE1-239ENST00000545694 MIGA2Q7L4E1 593 aa6.92□□□□□ -1.3
SYNE1-239ENST00000545694 RASGRP2Q7LDG7 609 aa6.92□□□□□ -1.3
SYNE1-239ENST00000545694 FAM114A1Q8IWE2 563 aa6.92□□□□□ -1.3
SYNE1-239ENST00000545694 SCYL3Q8IZE3 742 aa6.92□□□□□ -1.3
SYNE1-239ENST00000545694 GIMAP8Q8ND71 665 aaPredicted RBP6.92□□□□□ -1.3
SYNE1-239ENST00000545694 CCDC112Q8NEF3 446 aa6.92□□□□□ -1.3
SYNE1-239ENST00000545694 ACER1Q8TDN7 264 aa6.92□□□□□ -1.3
SYNE1-239ENST00000545694 LARP4BQ92615 738 aaKnown RBP6.92□□□□□ -1.3
SYNE1-239ENST00000545694 ACDQ96AP0 544 aa6.92□□□□□ -1.3
SYNE1-239ENST00000545694 TRIM9Q9C026 710 aa6.92□□□□□ -1.3
SYNE1-239ENST00000545694 ADARB2Q9NS39 739 aaKnown RBP6.92□□□□□ -1.3
SYNE1-239ENST00000545694 TMEM260Q9NX78 707 aa6.92□□□□□ -1.3
SYNE1-239ENST00000545694 NFE2L3Q9Y4A8 694 aa6.92□□□□□ -1.3
SYNE1-239ENST00000545694 SYNRGQ9UMZ2 1314 aa6.92□□□□□ -1.3
SYNE1-239ENST00000545694 SCN4AP35499 1836 aa6.92□□□□□ -1.3
SYNE1-239ENST00000545694 UNCXA6NJT0 531 aa6.91□□□□□ -1.3
SYNE1-239ENST00000545694 USP17L15C9J2P7 530 aa6.91□□□□□ -1.3
SYNE1-239ENST00000545694 USP17L13C9JLJ4 530 aa6.91□□□□□ -1.3
SYNE1-239ENST00000545694 USP17L11C9JVI0 530 aa6.91□□□□□ -1.3
SYNE1-239ENST00000545694 USP17L18D6R9N7 530 aa6.91□□□□□ -1.3
SYNE1-239ENST00000545694 USP17L22D6RA61 530 aa6.91□□□□□ -1.3
SYNE1-239ENST00000545694 USP17L17D6RBQ6 530 aa6.91□□□□□ -1.3
SYNE1-239ENST00000545694 USP17L19D6RCP7 530 aa6.91□□□□□ -1.3
SYNE1-239ENST00000545694 USP17L20D6RJB6 530 aa6.91□□□□□ -1.3
SYNE1-239ENST00000545694 ATP2A1O14983 1001 aa6.91□□□□□ -1.3
SYNE1-239ENST00000545694 FOXN1O15353 648 aa6.91□□□□□ -1.3
SYNE1-239ENST00000545694 SLC37A4O43826 429 aa6.91□□□□□ -1.3
SYNE1-239ENST00000545694 ZBED4O75132 1171 aa6.91□□□□□ -1.3
SYNE1-239ENST00000545694 TDP2O95551 362 aa6.91□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms