RNA–Protein interactions for RNA: ENST00000544547.5

LIMS1-215, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 4,461 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-215ENST00000544547 SGMS1Q86VZ5 419 aa15.43■□□□□ 0.06
LIMS1-215ENST00000544547 TGFBRAP1Q8WUH2 860 aa15.43■□□□□ 0.06
LIMS1-215ENST00000544547 TXLNGQ9NUQ3 528 aa15.43■□□□□ 0.06
LIMS1-215ENST00000544547 BAZ2BQ9UIF8 2168 aaKnown RBP15.42■□□□□ 0.06
LIMS1-215ENST00000544547 RIMS1Q86UR5 1692 aaKnown RBP15.42■□□□□ 0.06
LIMS1-215ENST00000544547 RNF225M0QZC1 329 aaPredicted RBP15.42■□□□□ 0.06
LIMS1-215ENST00000544547 AP1G2O75843 785 aa15.42■□□□□ 0.06
LIMS1-215ENST00000544547 IL9RQ01113 521 aa15.42■□□□□ 0.06
LIMS1-215ENST00000544547 STK4Q13043 487 aa15.42■□□□□ 0.06
LIMS1-215ENST00000544547 PARP10Q53GL7 1025 aa15.42■□□□□ 0.06
LIMS1-215ENST00000544547 GBP7Q8N8V2 638 aaPredicted RBP15.42■□□□□ 0.06
LIMS1-215ENST00000544547 DYDC2Q96IM9 177 aa15.42■□□□□ 0.06
LIMS1-215ENST00000544547 CYTH2Q99418 400 aa15.42■□□□□ 0.06
LIMS1-215ENST00000544547 CCDC188H7C350 402 aa15.42■□□□□ 0.06
LIMS1-215ENST00000544547 CPP00450 1065 aa15.42■□□□□ 0.06
LIMS1-215ENST00000544547 PMS2P54278 862 aa15.42■□□□□ 0.06
LIMS1-215ENST00000544547 COG7P83436 770 aa15.42■□□□□ 0.06
LIMS1-215ENST00000544547 MAP7Q14244 749 aa15.42■□□□□ 0.06
LIMS1-215ENST00000544547 SUSD4Q5VX71 490 aa15.42■□□□□ 0.06
LIMS1-215ENST00000544547 RFX8Q6ZV50 586 aa15.42■□□□□ 0.06
LIMS1-215ENST00000544547 IMPG2Q9BZV3 1241 aa15.42■□□□□ 0.06
LIMS1-215ENST00000544547 DBR1Q9UK59 544 aaKnown RBP15.42■□□□□ 0.06
LIMS1-215ENST00000544547 USTQ9Y2C2 406 aa15.42■□□□□ 0.06
LIMS1-215ENST00000544547 DIP2AQ14689 1571 aa15.42■□□□□ 0.06
LIMS1-215ENST00000544547 ARHGAP42A6NI28 874 aa15.42■□□□□ 0.06
LIMS1-215ENST00000544547 PRPF6O94906 941 aaKnown RBP15.42■□□□□ 0.06
LIMS1-215ENST00000544547 TROVE2P10155 538 aaKnown RBP eCLIP15.42■□□□□ 0.06
LIMS1-215ENST00000544547 KLRC1P26715 233 aa15.42■□□□□ 0.06
LIMS1-215ENST00000544547 SEPT2Q15019 361 aa15.42■□□□□ 0.06
LIMS1-215ENST00000544547 TMED2Q15363 201 aa15.42■□□□□ 0.06
LIMS1-215ENST00000544547 ANKRD20A8PQ5CZ79 823 aa15.42■□□□□ 0.06
LIMS1-215ENST00000544547 MPHOSPH6Q99547 160 aaKnown RBP15.42■□□□□ 0.06
LIMS1-215ENST00000544547 CDC37Q16543 378 aaPredicted RBP15.41■□□□□ 0.06
LIMS1-215ENST00000544547 SRRM1Q8IYB3 904 aaKnown RBP15.41■□□□□ 0.06
LIMS1-215ENST00000544547 LRRC34Q8IZ02 419 aa15.41■□□□□ 0.06
LIMS1-215ENST00000544547 LRRN2O75325 713 aa15.41■□□□□ 0.06
LIMS1-215ENST00000544547 ATP6V1G2O95670 118 aa15.41■□□□□ 0.06
LIMS1-215ENST00000544547 GAS8O95995 478 aa15.41■□□□□ 0.06
LIMS1-215ENST00000544547 IFNB1P01574 187 aa15.41■□□□□ 0.06
LIMS1-215ENST00000544547 PLCB4Q15147 1175 aa15.41■□□□□ 0.06
LIMS1-215ENST00000544547 PPP2R5EQ16537 467 aa15.41■□□□□ 0.06
LIMS1-215ENST00000544547 DDX27Q96GQ7 796 aaKnown RBP15.41■□□□□ 0.06
LIMS1-215ENST00000544547 HSD3B7Q9H2F3 369 aa15.41■□□□□ 0.06
LIMS1-215ENST00000544547 CPVLQ9H3G5 476 aa15.41■□□□□ 0.06
LIMS1-215ENST00000544547 FGFR1OP2Q9NVK5 253 aa15.41■□□□□ 0.06
LIMS1-215ENST00000544547 PCDHA4Q9UN74 947 aa15.41■□□□□ 0.06
LIMS1-215ENST00000544547 TRPC6Q9Y210 931 aa15.41■□□□□ 0.06
LIMS1-215ENST00000544547 FRMD4BQ9Y2L6 1034 aa15.41■□□□□ 0.06
LIMS1-215ENST00000544547 KIF3CO14782 793 aa15.41■□□□□ 0.06
LIMS1-215ENST00000544547 FGFR4P22455 802 aa15.41■□□□□ 0.06
LIMS1-215ENST00000544547 CTCFP49711 727 aaPredicted RBP15.41■□□□□ 0.06
LIMS1-215ENST00000544547 ATP2C1P98194 919 aaPredicted RBP15.41■□□□□ 0.06
LIMS1-215ENST00000544547 SP4Q02446 784 aa15.41■□□□□ 0.06
LIMS1-215ENST00000544547 RUNDC3BQ96NL0 473 aa15.41■□□□□ 0.06
LIMS1-215ENST00000544547 AGXT2Q9BYV1 514 aa15.41■□□□□ 0.06
LIMS1-215ENST00000544547 ZBTB21Q9ULJ3 1066 aa15.41■□□□□ 0.06
LIMS1-215ENST00000544547 SALL1Q9NSC2 1324 aa15.41■□□□□ 0.06
LIMS1-215ENST00000544547 KLRF2D3W0D1 207 aa15.41■□□□□ 0.06
LIMS1-215ENST00000544547 MRPL12P52815 198 aaKnown RBP15.41■□□□□ 0.06
LIMS1-215ENST00000544547 ADCY2Q08462 1091 aa15.41■□□□□ 0.06
LIMS1-215ENST00000544547 ENAHQ8N8S7 591 aaPredicted RBP15.41■□□□□ 0.06
LIMS1-215ENST00000544547 CNBD1Q8NA66 436 aa15.41■□□□□ 0.06
LIMS1-215ENST00000544547 JDP2Q8WYK2 163 aa15.41■□□□□ 0.06
LIMS1-215ENST00000544547 DDX12PQ92771 950 aa15.41■□□□□ 0.06
LIMS1-215ENST00000544547 VCX3BQ9H321 246 aa15.41■□□□□ 0.06
LIMS1-215ENST00000544547 VCX3AQ9NNX9 186 aa15.41■□□□□ 0.06
LIMS1-215ENST00000544547 CPDO75976 1380 aa15.41■□□□□ 0.06
LIMS1-215ENST00000544547 RWDD2BP57060 319 aa15.4■□□□□ 0.06
LIMS1-215ENST00000544547 SLC8A3P57103 927 aa15.4■□□□□ 0.06
LIMS1-215ENST00000544547 TRAPPC3LQ5T215 181 aa15.4■□□□□ 0.06
LIMS1-215ENST00000544547 EYA3Q99504 573 aa15.4■□□□□ 0.06
LIMS1-215ENST00000544547 ATP6V0A4Q9HBG4 840 aa15.4■□□□□ 0.06
LIMS1-215ENST00000544547 SLAIN2Q9P270 581 aa15.4■□□□□ 0.06
LIMS1-215ENST00000544547 COMMD10Q9Y6G5 202 aa15.4■□□□□ 0.06
LIMS1-215ENST00000544547 PASKQ96RG2 1323 aa15.4■□□□□ 0.06
LIMS1-215ENST00000544547 CHMP2AO43633 222 aa15.4■□□□□ 0.06
LIMS1-215ENST00000544547 GNA14O95837 355 aa15.4■□□□□ 0.06
LIMS1-215ENST00000544547 COPB2P35606 906 aa15.4■□□□□ 0.06
LIMS1-215ENST00000544547 CYP2J2P51589 502 aa15.4■□□□□ 0.06
LIMS1-215ENST00000544547 TXNRD1Q16881 649 aa15.4■□□□□ 0.06
LIMS1-215ENST00000544547 ARHGEF18Q6ZSZ5 1173 aa15.4■□□□□ 0.06
LIMS1-215ENST00000544547 ARHGAP24Q8N264 748 aa15.4■□□□□ 0.06
LIMS1-215ENST00000544547 DDX55Q8NHQ9 600 aaKnown RBP eCLIP15.4■□□□□ 0.06
LIMS1-215ENST00000544547 DLG5Q8TDM6 1919 aa15.4■□□□□ 0.06
LIMS1-215ENST00000544547 XDHP47989 1333 aa15.4■□□□□ 0.06
LIMS1-215ENST00000544547 RCN2Q14257 317 aa15.4■□□□□ 0.06
LIMS1-215ENST00000544547 ARL6IP4Q66PJ3 421 aaKnown RBP15.4■□□□□ 0.06
LIMS1-215ENST00000544547 APBB1IPQ7Z5R6 666 aaPredicted RBP15.4■□□□□ 0.06
LIMS1-215ENST00000544547 RILPQ96NA2 401 aa15.4■□□□□ 0.06
LIMS1-215ENST00000544547 DNAJC7Q99615 494 aa15.4■□□□□ 0.06
LIMS1-215ENST00000544547 BUD13Q9BRD0 619 aaKnown RBP eCLIP15.4■□□□□ 0.06
LIMS1-215ENST00000544547 EPB41L4AQ9HCS5 686 aaPredicted RBP15.4■□□□□ 0.06
LIMS1-215ENST00000544547 DLGAP2Q9P1A6 1054 aa15.4■□□□□ 0.06
LIMS1-215ENST00000544547 LEMD3Q9Y2U8 911 aa15.4■□□□□ 0.06
LIMS1-215ENST00000544547 DIP2BQ9P265 1576 aa15.4■□□□□ 0.06
LIMS1-215ENST00000544547 STXBP3O00186 592 aa15.39■□□□□ 0.05
LIMS1-215ENST00000544547 CALUO43852 315 aaPredicted RBP15.39■□□□□ 0.05
LIMS1-215ENST00000544547 SARSP49591 514 aaKnown RBP15.39■□□□□ 0.05
LIMS1-215ENST00000544547 TMEM154Q6P9G4 183 aa15.39■□□□□ 0.05
LIMS1-215ENST00000544547 PHLDB2Q86SQ0 1253 aa15.39■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms