RNA–Protein interactions for RNA: ENST00000543545.5

CPSF7-221, Transcript of cleavage and polyadenylation specific factor 7, human

TSL 5

Gene CPSF7, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPSF7-221	ENST00000543545	AK8	Q96MA6	479 aa		11.4	□□□□□ -0.58
CPSF7-221	ENST00000543545	TSEN34	Q9BSV6	310 aa	Known RBP	11.4	□□□□□ -0.58
CPSF7-221	ENST00000543545	MTG1	Q9BT17	334 aa	Predicted RBP	11.4	□□□□□ -0.58
CPSF7-221	ENST00000543545	RGL1	Q9NZL6	768 aa		11.4	□□□□□ -0.58
CPSF7-221	ENST00000543545	ZNF215	Q9UL58	517 aa	Predicted RBP	11.4	□□□□□ -0.58
CPSF7-221	ENST00000543545	PCDHA7	Q9UN72	937 aa		11.4	□□□□□ -0.58
CPSF7-221	ENST00000543545	ZNFX1	Q9P2E3	1918 aa	Known RBP	11.4	□□□□□ -0.58
CPSF7-221	ENST00000543545	CCDC85C	A6NKD9	419 aa		11.39	□□□□□ -0.59
CPSF7-221	ENST00000543545	DDX11L8	A8MPP1	907 aa		11.39	□□□□□ -0.59
CPSF7-221	ENST00000543545		H3BRB1	525 aa		11.39	□□□□□ -0.59
CPSF7-221	ENST00000543545	DNM1L	O00429	736 aa		11.39	□□□□□ -0.59
CPSF7-221	ENST00000543545	CTAGE5	O15320	804 aa		11.39	□□□□□ -0.59
CPSF7-221	ENST00000543545	DKC1	O60832	514 aa	Known RBP eCLIP	11.39	□□□□□ -0.59
CPSF7-221	ENST00000543545	CABYR	O75952	493 aa		11.39	□□□□□ -0.59
CPSF7-221	ENST00000543545	ASGR1	P07306	291 aa		11.39	□□□□□ -0.59
CPSF7-221	ENST00000543545	CST5	P28325	142 aa	Predicted RBP	11.39	□□□□□ -0.59
CPSF7-221	ENST00000543545	QARS	P47897	775 aa	Known RBP	11.39	□□□□□ -0.59
CPSF7-221	ENST00000543545	ACLY	P53396	1101 aa		11.39	□□□□□ -0.59
CPSF7-221	ENST00000543545	PSMC5	P62195	406 aa		11.39	□□□□□ -0.59
CPSF7-221	ENST00000543545	NKX3-2	P78367	333 aa		11.39	□□□□□ -0.59
CPSF7-221	ENST00000543545	CABP7	Q86V35	215 aa		11.39	□□□□□ -0.59
CPSF7-221	ENST00000543545	CCDC60	Q8IWA6	550 aa	Predicted RBP	11.39	□□□□□ -0.59
CPSF7-221	ENST00000543545	IGSF22	Q8N9C0	903 aa		11.39	□□□□□ -0.59
CPSF7-221	ENST00000543545	NEK9	Q8TD19	979 aa		11.39	□□□□□ -0.59
CPSF7-221	ENST00000543545	CALML4	Q96GE6	196 aa		11.39	□□□□□ -0.59
CPSF7-221	ENST00000543545	GLT1D1	Q96MS3	346 aa		11.39	□□□□□ -0.59
CPSF7-221	ENST00000543545	PCYT2	Q99447	389 aa		11.39	□□□□□ -0.59
CPSF7-221	ENST00000543545	PANK2	Q9BZ23	570 aa		11.39	□□□□□ -0.59
CPSF7-221	ENST00000543545	CRISPLD2	Q9H0B8	497 aa		11.39	□□□□□ -0.59
CPSF7-221	ENST00000543545	TUT1	Q9H6E5	874 aa	Known RBP	11.39	□□□□□ -0.59
CPSF7-221	ENST00000543545	ZSWIM4	Q9H7M6	989 aa		11.39	□□□□□ -0.59
CPSF7-221	ENST00000543545	FAM13B	Q9NYF5	915 aa		11.39	□□□□□ -0.59
CPSF7-221	ENST00000543545	ERAP1	Q9NZ08	941 aa		11.39	□□□□□ -0.59
CPSF7-221	ENST00000543545	MORC2	Q9Y6X9	1032 aa	Predicted RBP	11.39	□□□□□ -0.59
CPSF7-221	ENST00000543545	MOXD2P	A6NHM9	499 aa		11.38	□□□□□ -0.59
CPSF7-221	ENST00000543545	GOLGA6L22	H0YM25	854 aa		11.38	□□□□□ -0.59
CPSF7-221	ENST00000543545	PRPF40A	O75400	957 aa	Known RBP	11.38	□□□□□ -0.59
CPSF7-221	ENST00000543545	LGR5	O75473	907 aa		11.38	□□□□□ -0.59
CPSF7-221	ENST00000543545	SLITRK3	O94933	977 aa		11.38	□□□□□ -0.59
CPSF7-221	ENST00000543545	PSEN2	P49810	448 aa		11.38	□□□□□ -0.59
CPSF7-221	ENST00000543545	PSMC6	P62333	389 aa		11.38	□□□□□ -0.59
CPSF7-221	ENST00000543545	PURA	Q00577	322 aa	Known RBP	11.38	□□□□□ -0.59
CPSF7-221	ENST00000543545	MFSD10	Q14728	455 aa		11.38	□□□□□ -0.59
CPSF7-221	ENST00000543545	PLPPR4	Q7Z2D5	763 aa		11.38	□□□□□ -0.59
CPSF7-221	ENST00000543545	CATSPER3	Q86XQ3	398 aa		11.38	□□□□□ -0.59
CPSF7-221	ENST00000543545	ZNF579	Q8NAF0	562 aa	Known RBP	11.38	□□□□□ -0.59
CPSF7-221	ENST00000543545	SYMPK	Q92797	1274 aa	Known RBP	11.38	□□□□□ -0.59
CPSF7-221	ENST00000543545	EPSTI1	Q96J88	318 aa		11.38	□□□□□ -0.59
CPSF7-221	ENST00000543545	CCDC43	Q96MW1	224 aa	Known RBP	11.38	□□□□□ -0.59
CPSF7-221	ENST00000543545	PLIN2	Q99541	437 aa		11.38	□□□□□ -0.59
CPSF7-221	ENST00000543545	HSD17B14	Q9BPX1	270 aa		11.38	□□□□□ -0.59
CPSF7-221	ENST00000543545	LXN	Q9BS40	222 aa		11.38	□□□□□ -0.59
CPSF7-221	ENST00000543545	C16orf70	Q9BSU1	422 aa		11.38	□□□□□ -0.59
CPSF7-221	ENST00000543545	POLR3C	Q9BUI4	534 aa	Predicted RBP	11.38	□□□□□ -0.59
CPSF7-221	ENST00000543545	KATNAL1	Q9BW62	490 aa		11.38	□□□□□ -0.59
CPSF7-221	ENST00000543545	SENP6	Q9GZR1	1112 aa	Predicted RBP	11.38	□□□□□ -0.59
CPSF7-221	ENST00000543545	TUFT1	Q9NNX1	390 aa		11.38	□□□□□ -0.59
CPSF7-221	ENST00000543545	STARD7	Q9NQZ5	370 aa		11.38	□□□□□ -0.59
CPSF7-221	ENST00000543545	NRBP2	Q9NSY0	501 aa		11.38	□□□□□ -0.59
CPSF7-221	ENST00000543545	CCDC39	Q9UFE4	941 aa		11.38	□□□□□ -0.59
CPSF7-221	ENST00000543545	KIAA1024	Q9UPX6	916 aa		11.38	□□□□□ -0.59
CPSF7-221	ENST00000543545	TRPC6	Q9Y210	931 aa		11.38	□□□□□ -0.59
CPSF7-221	ENST00000543545	MAFB	Q9Y5Q3	323 aa	Predicted RBP	11.38	□□□□□ -0.59
CPSF7-221	ENST00000543545	RBBP6	Q7Z6E9	1792 aa	Known RBP	11.38	□□□□□ -0.59
CPSF7-221	ENST00000543545	LCT	P09848	1927 aa		11.37	□□□□□ -0.59
CPSF7-221	ENST00000543545		A0A087WWV3	80 aa		11.37	□□□□□ -0.59
CPSF7-221	ENST00000543545	IGKV6D-21	A0A0A0MT36	114 aa		11.37	□□□□□ -0.59
CPSF7-221	ENST00000543545	POTEB3	A0JP26	581 aa		11.37	□□□□□ -0.59
CPSF7-221	ENST00000543545	MED24	O75448	989 aa		11.37	□□□□□ -0.59
CPSF7-221	ENST00000543545	HOXD8	P13378	290 aa	Predicted RBP	11.37	□□□□□ -0.59
CPSF7-221	ENST00000543545	CAPN2	P17655	700 aa		11.37	□□□□□ -0.59
CPSF7-221	ENST00000543545	EN2	P19622	333 aa	Predicted RBP	11.37	□□□□□ -0.59
CPSF7-221	ENST00000543545	RPA1	P27694	616 aa		11.37	□□□□□ -0.59
CPSF7-221	ENST00000543545	SLC26A2	P50443	739 aa		11.37	□□□□□ -0.59
CPSF7-221	ENST00000543545	UGCG	Q16739	394 aa		11.37	□□□□□ -0.59
CPSF7-221	ENST00000543545	KIAA0753	Q2KHM9	967 aa		11.37	□□□□□ -0.59
CPSF7-221	ENST00000543545	FAM47C	Q5HY64	1035 aa		11.37	□□□□□ -0.59
CPSF7-221	ENST00000543545	AXDND1	Q5T1B0	1012 aa	Predicted RBP	11.37	□□□□□ -0.59
CPSF7-221	ENST00000543545	ADAL	Q6DHV7	355 aa		11.37	□□□□□ -0.59
CPSF7-221	ENST00000543545	CCSAP	Q6IQ19	270 aa	Predicted RBP	11.37	□□□□□ -0.59
CPSF7-221	ENST00000543545	POTEB	Q6S5H4	581 aa		11.37	□□□□□ -0.59
CPSF7-221	ENST00000543545	USP49	Q70CQ1	688 aa		11.37	□□□□□ -0.59
CPSF7-221	ENST00000543545	OTUD6A	Q7L8S5	288 aa		11.37	□□□□□ -0.59
CPSF7-221	ENST00000543545	C7orf31	Q8N865	590 aa		11.37	□□□□□ -0.59
CPSF7-221	ENST00000543545	AFAP1L1	Q8TED9	768 aa		11.37	□□□□□ -0.59
CPSF7-221	ENST00000543545	PPP1R13L	Q8WUF5	828 aa		11.37	□□□□□ -0.59
CPSF7-221	ENST00000543545	KAT2B	Q92831	832 aa		11.37	□□□□□ -0.59
CPSF7-221	ENST00000543545	FAM167A	Q96KS9	214 aa		11.37	□□□□□ -0.59
CPSF7-221	ENST00000543545	NACC1	Q96RE7	527 aa		11.37	□□□□□ -0.59
CPSF7-221	ENST00000543545	DDX19A	Q9NUU7	478 aa	Known RBP	11.37	□□□□□ -0.59
CPSF7-221	ENST00000543545	SEPT9	Q9UHD8	586 aa	Predicted RBP	11.37	□□□□□ -0.59
CPSF7-221	ENST00000543545	PHF24	Q9UPV7	400 aa		11.37	□□□□□ -0.59
CPSF7-221	ENST00000543545	EMSY	Q7Z589	1322 aa		11.36	□□□□□ -0.59
CPSF7-221	ENST00000543545	KDM3A	Q9Y4C1	1321 aa		11.36	□□□□□ -0.59
CPSF7-221	ENST00000543545	PLXNA1	Q9UIW2	1896 aa		11.36	□□□□□ -0.59
CPSF7-221	ENST00000543545		A0A1W2PQ45	241 aa	Predicted RBP	11.36	□□□□□ -0.59
CPSF7-221	ENST00000543545		A0A1W2PQY0	241 aa		11.36	□□□□□ -0.59
CPSF7-221	ENST00000543545	F2	P00734	622 aa		11.36	□□□□□ -0.59
CPSF7-221	ENST00000543545	OAT	P04181	439 aa		11.36	□□□□□ -0.59
CPSF7-221	ENST00000543545	SSB	P05455	408 aa	Known RBP eCLIP	11.36	□□□□□ -0.59

Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms