RNA–Protein interactions for RNA: ENST00000542238.5

RTN3-211, Transcript of reticulon 3, humanhuman

TSL 3

Gene RTN3, Length 735 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-211ENST00000542238 CCDC69A6NI79 296 aa17.7■□□□□ 0.42
RTN3-211ENST00000542238 RRN3P2A6NIE6 340 aa17.7■□□□□ 0.42
RTN3-211ENST00000542238 SPDYE3A6NKU9 549 aa17.7■□□□□ 0.42
RTN3-211ENST00000542238 MAFGO15525 162 aa17.7■□□□□ 0.42
RTN3-211ENST00000542238 ITGB5P18084 799 aa17.7■□□□□ 0.42
RTN3-211ENST00000542238 FBXO47Q5MNV8 452 aa17.7■□□□□ 0.42
RTN3-211ENST00000542238 IER5Q5VY09 327 aa17.7■□□□□ 0.42
RTN3-211ENST00000542238 TNPO1Q92973 898 aaKnown RBP17.7■□□□□ 0.42
RTN3-211ENST00000542238 POP1Q99575 1024 aaKnown RBP17.7■□□□□ 0.42
RTN3-211ENST00000542238 PLVAPQ9BX97 442 aa17.7■□□□□ 0.42
RTN3-211ENST00000542238 RC3H2Q9HBD1 1191 aaKnown RBP17.7■□□□□ 0.42
RTN3-211ENST00000542238 PKD2L1Q9P0L9 805 aa17.7■□□□□ 0.42
RTN3-211ENST00000542238 CDY2AQ9Y6F7 541 aa17.7■□□□□ 0.42
RTN3-211ENST00000542238 LOXHD1Q8IVV2 1947 aa17.7■□□□□ 0.42
RTN3-211ENST00000542238 POTEB3A0JP26 581 aa17.69■□□□□ 0.42
RTN3-211ENST00000542238 C19orf67A6NJJ6 358 aa17.69■□□□□ 0.42
RTN3-211ENST00000542238 M0QZ92 97 aa17.69■□□□□ 0.42
RTN3-211ENST00000542238 PRC1O43663 620 aa17.69■□□□□ 0.42
RTN3-211ENST00000542238 PLEKHA8P1O95397 391 aa17.69■□□□□ 0.42
RTN3-211ENST00000542238 CALM1P0DP23 149 aa17.69■□□□□ 0.42
RTN3-211ENST00000542238 CALM2P0DP24 149 aa17.69■□□□□ 0.42
RTN3-211ENST00000542238 CALM3P0DP25 149 aa17.69■□□□□ 0.42
RTN3-211ENST00000542238 MCM5P33992 734 aa17.69■□□□□ 0.42
RTN3-211ENST00000542238 LTBRP36941 435 aa17.69■□□□□ 0.42
RTN3-211ENST00000542238 IGBP1P78318 339 aa17.69■□□□□ 0.42
RTN3-211ENST00000542238 MRPS6P82932 125 aaKnown RBP17.69■□□□□ 0.42
RTN3-211ENST00000542238 CTC1Q2NKJ3 1217 aa17.69■□□□□ 0.42
RTN3-211ENST00000542238 MARCH8Q5T0T0 291 aa17.69■□□□□ 0.42
RTN3-211ENST00000542238 POTEBQ6S5H4 581 aa17.69■□□□□ 0.42
RTN3-211ENST00000542238 SRBD1Q8N5C6 995 aaKnown RBP17.69■□□□□ 0.42
RTN3-211ENST00000542238 PPP2R3CQ969Q6 453 aa17.69■□□□□ 0.42
RTN3-211ENST00000542238 ZNF689Q96CS4 500 aaPredicted RBP17.69■□□□□ 0.42
RTN3-211ENST00000542238 TMEM87BQ96K49 555 aa17.69■□□□□ 0.42
RTN3-211ENST00000542238 YTHDC1Q96MU7 727 aaKnown RBP17.69■□□□□ 0.42
RTN3-211ENST00000542238 FTHL17Q9BXU8 183 aa17.69■□□□□ 0.42
RTN3-211ENST00000542238 AZI2Q9H6S1 392 aa17.69■□□□□ 0.42
RTN3-211ENST00000542238 RBM8AQ9Y5S9 174 aaKnown RBP17.69■□□□□ 0.42
RTN3-211ENST00000542238 UBIAD1Q9Y5Z9 338 aa17.69■□□□□ 0.42
RTN3-211ENST00000542238 DGKIO75912 1065 aa17.68■□□□□ 0.42
RTN3-211ENST00000542238 MMP1P03956 469 aa17.68■□□□□ 0.42
RTN3-211ENST00000542238 LINC00271P0C7V0 271 aa17.68■□□□□ 0.42
RTN3-211ENST00000542238 HYAL1Q12794 435 aa17.68■□□□□ 0.42
RTN3-211ENST00000542238 SMAD2Q15796 467 aaKnown RBP17.68■□□□□ 0.42
RTN3-211ENST00000542238 CLUL1Q15846 466 aa17.68■□□□□ 0.42
RTN3-211ENST00000542238 FAM49AQ9H0Q0 323 aaPredicted RBP17.68■□□□□ 0.42
RTN3-211ENST00000542238 IGFLR1Q9H665 355 aa17.68■□□□□ 0.42
RTN3-211ENST00000542238 JPH1Q9HDC5 661 aaPredicted RBP17.68■□□□□ 0.42
RTN3-211ENST00000542238 SQORQ9Y6N5 450 aa17.68■□□□□ 0.42
RTN3-211ENST00000542238 CSPG5O95196 566 aa17.67■□□□□ 0.42
RTN3-211ENST00000542238 STAG3L1P0CL83 205 aa17.67■□□□□ 0.42
RTN3-211ENST00000542238 INSRRP14616 1297 aa17.67■□□□□ 0.42
RTN3-211ENST00000542238 CD52P31358 61 aa17.67■□□□□ 0.42
RTN3-211ENST00000542238 UBE2SQ16763 222 aa17.67■□□□□ 0.42
RTN3-211ENST00000542238 NAALADL2Q58DX5 795 aa17.67■□□□□ 0.42
RTN3-211ENST00000542238 CMTR1Q8N1G2 835 aaKnown RBP17.67■□□□□ 0.42
RTN3-211ENST00000542238 P2RX5Q93086 422 aa17.67■□□□□ 0.42
RTN3-211ENST00000542238 ALG13Q9NP73 1137 aaKnown RBP17.67■□□□□ 0.42
RTN3-211ENST00000542238 JADE2Q9NQC1 790 aa17.67■□□□□ 0.42
RTN3-211ENST00000542238 PCDHA6Q9UN73 950 aa17.67■□□□□ 0.42
RTN3-211ENST00000542238 PLAGL2Q9UPG8 496 aa17.67■□□□□ 0.42
RTN3-211ENST00000542238 TRPC6Q9Y210 931 aa17.67■□□□□ 0.42
RTN3-211ENST00000542238 PCDHA8Q9Y5H6 950 aa17.67■□□□□ 0.42
RTN3-211ENST00000542238 KIAA1671Q9BY89 1806 aa17.66■□□□□ 0.42
RTN3-211ENST00000542238 SH2B2O14492 632 aaPredicted RBP17.66■□□□□ 0.42
RTN3-211ENST00000542238 MBTPS2O43462 519 aa17.66■□□□□ 0.42
RTN3-211ENST00000542238 IRS1P35568 1242 aa17.66■□□□□ 0.42
RTN3-211ENST00000542238 DLX2Q07687 328 aaPredicted RBP17.66■□□□□ 0.42
RTN3-211ENST00000542238 SMAD4Q13485 552 aaKnown RBP17.66■□□□□ 0.42
RTN3-211ENST00000542238 ALYREFQ86V81 257 aaKnown RBP17.66■□□□□ 0.42
RTN3-211ENST00000542238 NPAS4Q8IUM7 802 aa17.66■□□□□ 0.42
RTN3-211ENST00000542238 CMTR2Q8IYT2 770 aaKnown RBP17.66■□□□□ 0.42
RTN3-211ENST00000542238 KCNH6Q9H252 994 aa17.66■□□□□ 0.42
RTN3-211ENST00000542238 AGO3Q9H9G7 860 aaKnown RBP17.66■□□□□ 0.42
RTN3-211ENST00000542238 SLC9A2Q9UBY0 812 aa17.66■□□□□ 0.42
RTN3-211ENST00000542238 CD207Q9UJ71 328 aa17.66■□□□□ 0.42
RTN3-211ENST00000542238 TRPV2Q9Y5S1 764 aa17.66■□□□□ 0.42
RTN3-211ENST00000542238 SLC12A7Q9Y666 1083 aa17.66■□□□□ 0.42
RTN3-211ENST00000542238 RXRAP19793 462 aa17.65■□□□□ 0.42
RTN3-211ENST00000542238 LIFRP42702 1097 aa17.65■□□□□ 0.42
RTN3-211ENST00000542238 NDUFV1P49821 464 aa17.65■□□□□ 0.42
RTN3-211ENST00000542238 PAK2Q13177 524 aa17.65■□□□□ 0.42
RTN3-211ENST00000542238 HEATR3Q7Z4Q2 680 aa17.65■□□□□ 0.42
RTN3-211ENST00000542238 CCDC82Q8N4S0 544 aa17.65■□□□□ 0.42
RTN3-211ENST00000542238 SDF4Q9BRK5 362 aa17.65■□□□□ 0.42
RTN3-211ENST00000542238 MRPL42Q9Y6G3 142 aaKnown RBP17.65■□□□□ 0.42
RTN3-211ENST00000542238 hCG_1642624A0A1W2PR95 340 aa17.64■□□□□ 0.41
RTN3-211ENST00000542238 GTF2F1P35269 517 aaKnown RBP eCLIP17.64■□□□□ 0.413e-7■■■■■ 29.2
RTN3-211ENST00000542238 TMEM62Q0P6H9 643 aa17.64■□□□□ 0.41
RTN3-211ENST00000542238 ADAM15Q13444 863 aa17.64■□□□□ 0.41
RTN3-211ENST00000542238 PLPPR4Q7Z2D5 763 aa17.64■□□□□ 0.41
RTN3-211ENST00000542238 RTN4RL1Q86UN2 441 aaPredicted RBP17.64■□□□□ 0.41
RTN3-211ENST00000542238 NME8Q8N427 588 aa17.64■□□□□ 0.41
RTN3-211ENST00000542238 FANCBQ8NB91 859 aa17.64■□□□□ 0.41
RTN3-211ENST00000542238 LINC01599Q8WXQ3 324 aa17.64■□□□□ 0.41
RTN3-211ENST00000542238 ZBTB10Q96DT7 871 aa17.64■□□□□ 0.41
RTN3-211ENST00000542238 PCYT2Q99447 389 aa17.64■□□□□ 0.41
RTN3-211ENST00000542238 MXRA8Q9BRK3 442 aa17.64■□□□□ 0.41
RTN3-211ENST00000542238 KCNH7Q9NS40 1196 aa17.64■□□□□ 0.41
RTN3-211ENST00000542238 LRFN2Q9ULH4 789 aa17.64■□□□□ 0.41
RTN3-211ENST00000542238 PADI3Q9ULW8 664 aa17.64■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms