RNA–Protein interactions for RNA: ENST00000541410.1

CLIP1-216, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,379 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-216ENST00000541410 ATP9AO75110 1047 aa16.07■□□□□ 0.16
CLIP1-216ENST00000541410 TBCAO75347 108 aaKnown RBP16.07■□□□□ 0.16
CLIP1-216ENST00000541410 GCNT3O95395 438 aa16.07■□□□□ 0.16
CLIP1-216ENST00000541410 CCDC175P0C221 793 aa16.07■□□□□ 0.16
CLIP1-216ENST00000541410 FKBP3Q00688 224 aaKnown RBP16.07■□□□□ 0.16
CLIP1-216ENST00000541410 TMEM132BQ14DG7 1078 aa16.07■□□□□ 0.16
CLIP1-216ENST00000541410 FKBP15Q5T1M5 1219 aa16.07■□□□□ 0.16
CLIP1-216ENST00000541410 TUFT1Q9NNX1 390 aa16.07■□□□□ 0.16
CLIP1-216ENST00000541410 GINM1Q9NU53 330 aa16.07■□□□□ 0.16
CLIP1-216ENST00000541410 TFR2Q9UP52 801 aa16.07■□□□□ 0.16
CLIP1-216ENST00000541410 KIAA1217Q5T5P2 1943 aa16.07■□□□□ 0.16
CLIP1-216ENST00000541410 CCP110O43303 1012 aa16.07■□□□□ 0.16
CLIP1-216ENST00000541410 NMT1P30419 496 aaKnown RBP16.07■□□□□ 0.16
CLIP1-216ENST00000541410 GNG11P61952 73 aa16.07■□□□□ 0.16
CLIP1-216ENST00000541410 VGLL4Q14135 290 aa16.07■□□□□ 0.16
CLIP1-216ENST00000541410 TRIM14Q14142 442 aa16.07■□□□□ 0.16
CLIP1-216ENST00000541410 ZC2HC1CQ53FD0 456 aaPredicted RBP16.07■□□□□ 0.16
CLIP1-216ENST00000541410 ARHGEF16Q5VV41 709 aa16.07■□□□□ 0.16
CLIP1-216ENST00000541410 PPP1R3FQ6ZSY5 799 aaPredicted RBP16.07■□□□□ 0.16
CLIP1-216ENST00000541410 MOB2Q70IA6 237 aa16.07■□□□□ 0.16
CLIP1-216ENST00000541410 MIER3Q7Z3K6 550 aa16.07■□□□□ 0.16
CLIP1-216ENST00000541410 MMRN2Q9H8L6 949 aa16.07■□□□□ 0.16
CLIP1-216ENST00000541410 DHX15O43143 795 aaKnown RBP16.06■□□□□ 0.16
CLIP1-216ENST00000541410 GTF2F1P35269 517 aaKnown RBP eCLIP16.06■□□□□ 0.16
CLIP1-216ENST00000541410 APBA1Q02410 837 aa16.06■□□□□ 0.16
CLIP1-216ENST00000541410 ADAM9Q13443 819 aa16.06■□□□□ 0.16
CLIP1-216ENST00000541410 MAN2A1Q16706 1144 aa16.06■□□□□ 0.16
CLIP1-216ENST00000541410 PCNX4Q63HM2 1172 aa16.06■□□□□ 0.16
CLIP1-216ENST00000541410 WDR59Q6PJI9 974 aa16.06■□□□□ 0.16
CLIP1-216ENST00000541410 MYCT1Q8N699 235 aa16.06■□□□□ 0.16
CLIP1-216ENST00000541410 LRRN4CLQ8ND94 238 aa16.06■□□□□ 0.16
CLIP1-216ENST00000541410 OR8K1Q8NGG5 319 aa16.06■□□□□ 0.16
CLIP1-216ENST00000541410 SYT17Q9BSW7 474 aa16.06■□□□□ 0.16
CLIP1-216ENST00000541410 NAA15Q9BXJ9 866 aaKnown RBP16.06■□□□□ 0.16
CLIP1-216ENST00000541410 AGO4Q9HCK5 861 aaKnown RBP16.06■□□□□ 0.16
CLIP1-216ENST00000541410 ZNF214Q9UL59 606 aaPredicted RBP16.06■□□□□ 0.16
CLIP1-216ENST00000541410 CAPN11Q9UMQ6 739 aa16.06■□□□□ 0.16
CLIP1-216ENST00000541410 COL4A3BPQ9Y5P4 624 aa16.06■□□□□ 0.16
CLIP1-216ENST00000541410 CLIC2O15247 247 aa16.06■□□□□ 0.16
CLIP1-216ENST00000541410 SLC26A4O43511 780 aa16.06■□□□□ 0.16
CLIP1-216ENST00000541410 DSG3P32926 999 aa16.06■□□□□ 0.16
CLIP1-216ENST00000541410 COG2Q14746 738 aa16.06■□□□□ 0.16
CLIP1-216ENST00000541410 CYP26C1Q6V0L0 522 aa16.06■□□□□ 0.16
CLIP1-216ENST00000541410 C1orf186Q6ZWK4 172 aa16.06■□□□□ 0.16
CLIP1-216ENST00000541410 DDX55Q8NHQ9 600 aaKnown RBP eCLIP16.06■□□□□ 0.16
CLIP1-216ENST00000541410 CCDC51Q96ER9 411 aa16.06■□□□□ 0.16
CLIP1-216ENST00000541410 PDCD2LQ9BRP1 358 aa16.06■□□□□ 0.16
CLIP1-216ENST00000541410 CRACR2AQ9BSW2 395 aa16.06■□□□□ 0.16
CLIP1-216ENST00000541410 TTYH3Q9C0H2 523 aa16.06■□□□□ 0.16
CLIP1-216ENST00000541410 PXMP2Q9NR77 195 aa16.06■□□□□ 0.16
CLIP1-216ENST00000541410 TMOD4Q9NZQ9 345 aa16.06■□□□□ 0.16
CLIP1-216ENST00000541410 ZNF215Q9UL58 517 aaPredicted RBP16.06■□□□□ 0.16
CLIP1-216ENST00000541410 AFG3L2Q9Y4W6 797 aa16.06■□□□□ 0.16
CLIP1-216ENST00000541410 UBIAD1Q9Y5Z9 338 aa16.06■□□□□ 0.16
CLIP1-216ENST00000541410 FAM13AO94988 1023 aa16.05■□□□□ 0.16
CLIP1-216ENST00000541410 FGFR1OPO95684 399 aaKnown RBP16.05■□□□□ 0.16
CLIP1-216ENST00000541410 NR2F2P24468 414 aa16.05■□□□□ 0.16
CLIP1-216ENST00000541410 EPHA7Q15375 998 aa16.05■□□□□ 0.16
CLIP1-216ENST00000541410 SUPT20HL1Q3ZLR7 823 aa16.05■□□□□ 0.16
CLIP1-216ENST00000541410 TREML2Q5T2D2 321 aa16.05■□□□□ 0.16
CLIP1-216ENST00000541410 B3GNT9Q6UX72 402 aa16.05■□□□□ 0.16
CLIP1-216ENST00000541410 KRT26Q7Z3Y9 468 aa16.05■□□□□ 0.16
CLIP1-216ENST00000541410 REPS2Q8NFH8 660 aa16.05■□□□□ 0.16
CLIP1-216ENST00000541410 JADE2Q9NQC1 790 aa16.05■□□□□ 0.16
CLIP1-216ENST00000541410 KIF2AO00139 706 aaPredicted RBP16.05■□□□□ 0.16
CLIP1-216ENST00000541410 SP4Q02446 784 aa16.05■□□□□ 0.16
CLIP1-216ENST00000541410 TMTC1Q8IUR5 882 aa16.05■□□□□ 0.16
CLIP1-216ENST00000541410 RIT2Q99578 217 aa16.05■□□□□ 0.16
CLIP1-216ENST00000541410 ARID3AQ99856 593 aa16.05■□□□□ 0.16
CLIP1-216ENST00000541410 TELO2Q9Y4R8 837 aa16.05■□□□□ 0.16
CLIP1-216ENST00000541410 STK24Q9Y6E0 443 aa16.05■□□□□ 0.16
CLIP1-216ENST00000541410 SNCAIPQ9Y6H5 919 aa16.05■□□□□ 0.16
CLIP1-216ENST00000541410 URI1O94763 535 aaPredicted RBP16.04■□□□□ 0.16
CLIP1-216ENST00000541410 KNOP1Q1ED39 458 aaKnown RBP16.04■□□□□ 0.16
CLIP1-216ENST00000541410 UTP14CQ5TAP6 766 aaKnown RBP16.04■□□□□ 0.16
CLIP1-216ENST00000541410 C9orf131Q5VYM1 1079 aa16.04■□□□□ 0.16
CLIP1-216ENST00000541410 CATSPERGQ6ZRH7 1159 aa16.04■□□□□ 0.16
CLIP1-216ENST00000541410 ZNF710Q8N1W2 664 aa16.04■□□□□ 0.16
CLIP1-216ENST00000541410 DCPSQ96C86 337 aaKnown RBP16.04■□□□□ 0.16
CLIP1-216ENST00000541410 NACC1Q96RE7 527 aa16.04■□□□□ 0.16
CLIP1-216ENST00000541410 ERGIC2Q96RQ1 377 aa16.04■□□□□ 0.16
CLIP1-216ENST00000541410 DNAJC7Q99615 494 aa16.04■□□□□ 0.16
CLIP1-216ENST00000541410 SIK3Q9Y2K2 1263 aa16.04■□□□□ 0.16
CLIP1-216ENST00000541410 SPDYE16A6NNV3 312 aaPredicted RBP16.04■□□□□ 0.16
CLIP1-216ENST00000541410 C19orf81C9J6K1 198 aa16.04■□□□□ 0.16
CLIP1-216ENST00000541410 PLEKP08567 350 aaPredicted RBP16.04■□□□□ 0.16
CLIP1-216ENST00000541410 UGCGQ16739 394 aa16.04■□□□□ 0.16
CLIP1-216ENST00000541410 SULF1Q8IWU6 871 aa16.04■□□□□ 0.16
CLIP1-216ENST00000541410 TRIM10Q9UDY6 481 aa16.04■□□□□ 0.16
CLIP1-216ENST00000541410 PCNTO95613 3336 aa16.03■□□□□ 0.16
CLIP1-216ENST00000541410 FECHP22830 423 aa16.03■□□□□ 0.16
CLIP1-216ENST00000541410 TSR1Q2NL82 804 aaKnown RBP16.03■□□□□ 0.16
CLIP1-216ENST00000541410 EPM2AIP1Q7L775 607 aaPredicted RBP16.03■□□□□ 0.16
CLIP1-216ENST00000541410 CLMNQ96JQ2 1002 aa16.03■□□□□ 0.16
CLIP1-216ENST00000541410 ADARB2Q9NS39 739 aaKnown RBP16.03■□□□□ 0.16
CLIP1-216ENST00000541410 ARHGEF35A5YM69 484 aa16.02■□□□□ 0.16
CLIP1-216ENST00000541410 CTIFO43310 598 aaKnown RBP16.02■□□□□ 0.16
CLIP1-216ENST00000541410 BCRP11274 1271 aa16.02■□□□□ 0.16
CLIP1-216ENST00000541410 CASP4P49662 377 aa16.02■□□□□ 0.16
CLIP1-216ENST00000541410 KCNMA1Q12791 1236 aa16.02■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms