RNA–Protein interactions for RNA: ENST00000539982.5

CLSTN3-209, Transcript of calsyntenin 3, humanhuman

TSL 4

Gene CLSTN3, Length 570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-209ENST00000539982 KAT6AQ92794 2004 aa13.43□□□□□ -0.26
CLSTN3-209ENST00000539982 USP15Q9Y4E8 981 aaPredicted RBP13.43□□□□□ -0.26
CLSTN3-209ENST00000539982 ZDBF2Q9HCK1 2354 aa13.42□□□□□ -0.26
CLSTN3-209ENST00000539982 MBLAC1A4D2B0 266 aaPredicted RBP13.42□□□□□ -0.26
CLSTN3-209ENST00000539982 GLP2RO95838 553 aa13.42□□□□□ -0.26
CLSTN3-209ENST00000539982 STAG3L1P0CL83 205 aa13.42□□□□□ -0.26
CLSTN3-209ENST00000539982 ATF7P17544 494 aaPredicted RBP13.42□□□□□ -0.26
CLSTN3-209ENST00000539982 AVPR2P30518 371 aa13.42□□□□□ -0.26
CLSTN3-209ENST00000539982 TCF7P36402 384 aaPredicted RBP13.42□□□□□ -0.26
CLSTN3-209ENST00000539982 SP4Q02446 784 aa13.42□□□□□ -0.26
CLSTN3-209ENST00000539982 PPFIA1Q13136 1202 aa13.42□□□□□ -0.26
CLSTN3-209ENST00000539982 XRRA1Q6P2D8 792 aa13.42□□□□□ -0.26
CLSTN3-209ENST00000539982 CWC27Q6UX04 472 aaKnown RBP13.42□□□□□ -0.26
CLSTN3-209ENST00000539982 NPAS4Q8IUM7 802 aa13.42□□□□□ -0.26
CLSTN3-209ENST00000539982 ASIC4Q96FT7 647 aa13.42□□□□□ -0.26
CLSTN3-209ENST00000539982 RPGRIP1Q96KN7 1286 aa13.42□□□□□ -0.26
CLSTN3-209ENST00000539982 DSCC1Q9BVC3 393 aa13.42□□□□□ -0.26
CLSTN3-209ENST00000539982 FTHL17Q9BXU8 183 aa13.42□□□□□ -0.26
CLSTN3-209ENST00000539982 AGO3Q9H9G7 860 aaKnown RBP13.42□□□□□ -0.26
CLSTN3-209ENST00000539982 BARX2Q9UMQ3 279 aaPredicted RBP13.42□□□□□ -0.26
CLSTN3-209ENST00000539982 CDY2AQ9Y6F7 541 aa13.42□□□□□ -0.26
CLSTN3-209ENST00000539982 SQORQ9Y6N5 450 aa13.42□□□□□ -0.26
CLSTN3-209ENST00000539982 CYTH3O43739 400 aa13.41□□□□□ -0.26
CLSTN3-209ENST00000539982 RPLP2P05387 115 aaKnown RBP13.41□□□□□ -0.26
CLSTN3-209ENST00000539982 CD52P31358 61 aa13.41□□□□□ -0.26
CLSTN3-209ENST00000539982 VCPP55072 806 aaKnown RBP13.41□□□□□ -0.26
CLSTN3-209ENST00000539982 MRPS6P82932 125 aaKnown RBP13.41□□□□□ -0.26
CLSTN3-209ENST00000539982 FOXK2Q01167 660 aa13.41□□□□□ -0.26
CLSTN3-209ENST00000539982 GRM4Q14833 912 aa13.41□□□□□ -0.26
CLSTN3-209ENST00000539982 GRIK4Q16099 956 aa13.41□□□□□ -0.26
CLSTN3-209ENST00000539982 MARCH8Q5T0T0 291 aa13.41□□□□□ -0.26
CLSTN3-209ENST00000539982 IER5Q5VY09 327 aa13.41□□□□□ -0.26
CLSTN3-209ENST00000539982 PCNX4Q63HM2 1172 aa13.41□□□□□ -0.26
CLSTN3-209ENST00000539982 NLRX1Q86UT6 975 aa13.41□□□□□ -0.26
CLSTN3-209ENST00000539982 LINC01599Q8WXQ3 324 aa13.41□□□□□ -0.26
CLSTN3-209ENST00000539982 SEPT1Q8WYJ6 367 aa13.41□□□□□ -0.26
CLSTN3-209ENST00000539982 ATOH1Q92858 354 aaPredicted RBP13.41□□□□□ -0.26
CLSTN3-209ENST00000539982 TLE6Q9H808 572 aa13.41□□□□□ -0.26
CLSTN3-209ENST00000539982 FAM86C1Q9NVL1 165 aa13.41□□□□□ -0.26
CLSTN3-209ENST00000539982 ERAP1Q9NZ08 941 aa13.41□□□□□ -0.26
CLSTN3-209ENST00000539982 TUBE1Q9UJT0 475 aa13.41□□□□□ -0.26
CLSTN3-209ENST00000539982 DOCK5Q9H7D0 1870 aa13.41□□□□□ -0.26
CLSTN3-209ENST00000539982 CFAP54Q96N23 3096 aa13.41□□□□□ -0.26
CLSTN3-209ENST00000539982 LAMA4Q16363 1823 aa13.41□□□□□ -0.26
CLSTN3-209ENST00000539982 GSTTP1A0A1W2PQM5 241 aa13.4□□□□□ -0.26
CLSTN3-209ENST00000539982 NUBP1P53384 320 aa13.4□□□□□ -0.26
CLSTN3-209ENST00000539982 HDAC1Q13547 482 aaPredicted RBP13.4□□□□□ -0.26
CLSTN3-209ENST00000539982 PAN2Q504Q3 1202 aaKnown RBP13.4□□□□□ -0.26
CLSTN3-209ENST00000539982 CYB5R4Q7L1T6 521 aa13.4□□□□□ -0.26
CLSTN3-209ENST00000539982 MICAL1Q8TDZ2 1067 aa13.4□□□□□ -0.26
CLSTN3-209ENST00000539982 ATP8B4Q8TF62 1192 aa13.4□□□□□ -0.26
CLSTN3-209ENST00000539982 SUSD6Q92537 303 aa13.4□□□□□ -0.26
CLSTN3-209ENST00000539982 DIAPH3Q9NSV4 1193 aa13.4□□□□□ -0.26
CLSTN3-209ENST00000539982 KMT2EQ8IZD2 1858 aa13.4□□□□□ -0.26
CLSTN3-209ENST00000539982 FSD2A1L4K1 749 aa13.39□□□□□ -0.27
CLSTN3-209ENST00000539982 RRN3P2A6NIE6 340 aa13.39□□□□□ -0.27
CLSTN3-209ENST00000539982 HIP1O00291 1037 aa13.39□□□□□ -0.27
CLSTN3-209ENST00000539982 PER2O15055 1255 aa13.39□□□□□ -0.27
CLSTN3-209ENST00000539982 ATP9AO75110 1047 aa13.39□□□□□ -0.27
CLSTN3-209ENST00000539982 PPFIA3O75145 1194 aa13.39□□□□□ -0.27
CLSTN3-209ENST00000539982 SCG2P13521 617 aa13.39□□□□□ -0.27
CLSTN3-209ENST00000539982 MARK3P27448 753 aa13.39□□□□□ -0.27
CLSTN3-209ENST00000539982 UBE3AQ05086 875 aa13.39□□□□□ -0.27
CLSTN3-209ENST00000539982 PTPN21Q16825 1174 aa13.39□□□□□ -0.27
CLSTN3-209ENST00000539982 SMARCC2Q8TAQ2 1214 aa13.39□□□□□ -0.27
CLSTN3-209ENST00000539982 GLG1Q92896 1179 aa13.39□□□□□ -0.27
CLSTN3-209ENST00000539982 CDCA3Q99618 268 aaPredicted RBP13.39□□□□□ -0.27
CLSTN3-209ENST00000539982 LNPKQ9C0E8 428 aa13.39□□□□□ -0.27
CLSTN3-209ENST00000539982 SMARCAD1Q9H4L7 1026 aa13.39□□□□□ -0.27
CLSTN3-209ENST00000539982 PADI3Q9ULW8 664 aa13.39□□□□□ -0.27
CLSTN3-209ENST00000539982 PCDHGC5Q9Y5F6 944 aa13.39□□□□□ -0.27
CLSTN3-209ENST00000539982 BAZ2BQ9UIF8 2168 aaKnown RBP13.39□□□□□ -0.27
CLSTN3-209ENST00000539982 CACNA1HO95180 2353 aa13.39□□□□□ -0.27
CLSTN3-209ENST00000539982 PROB1E7EW31 1015 aa13.38□□□□□ -0.27
CLSTN3-209ENST00000539982 PIK3CDO00329 1044 aa13.38□□□□□ -0.27
CLSTN3-209ENST00000539982 KCNA2P16389 499 aa13.38□□□□□ -0.27
CLSTN3-209ENST00000539982 IGBP1P78318 339 aa13.38□□□□□ -0.27
CLSTN3-209ENST00000539982 USP17L6PQ6QN14 398 aa13.38□□□□□ -0.27
CLSTN3-209ENST00000539982 FAM43BQ6ZT52 329 aaPredicted RBP13.38□□□□□ -0.27
CLSTN3-209ENST00000539982 CUL5Q93034 780 aa13.38□□□□□ -0.27
CLSTN3-209ENST00000539982 GPRASP2Q96D09 838 aa13.38□□□□□ -0.27
CLSTN3-209ENST00000539982 CDHR1Q96JP9 859 aa13.38□□□□□ -0.27
CLSTN3-209ENST00000539982 NEK1Q96PY6 1258 aa13.38□□□□□ -0.27
CLSTN3-209ENST00000539982 FAM49AQ9H0Q0 323 aaPredicted RBP13.38□□□□□ -0.27
CLSTN3-209ENST00000539982 OSBPL3Q9H4L5 887 aa13.38□□□□□ -0.27
CLSTN3-209ENST00000539982 LRFN2Q9ULH4 789 aa13.38□□□□□ -0.27
CLSTN3-209ENST00000539982 PCDHB12Q9Y5F1 795 aa13.38□□□□□ -0.27
CLSTN3-209ENST00000539982 TRPV2Q9Y5S1 764 aa13.38□□□□□ -0.27
CLSTN3-209ENST00000539982 KIAA1671Q9BY89 1806 aa13.37□□□□□ -0.27
CLSTN3-209ENST00000539982 H0Y858 1186 aa13.37□□□□□ -0.27
CLSTN3-209ENST00000539982 M0QZ92 97 aa13.37□□□□□ -0.27
CLSTN3-209ENST00000539982 MEIS2O14770 477 aa13.37□□□□□ -0.27
CLSTN3-209ENST00000539982 INSRRP14616 1297 aa13.37□□□□□ -0.27
CLSTN3-209ENST00000539982 GATMP50440 423 aa13.37□□□□□ -0.27
CLSTN3-209ENST00000539982 RBM10P98175 930 aaKnown RBP13.37□□□□□ -0.27
CLSTN3-209ENST00000539982 TROAPQ12815 778 aa13.37□□□□□ -0.27
CLSTN3-209ENST00000539982 TRDNQ13061 729 aa13.37□□□□□ -0.27
CLSTN3-209ENST00000539982 PAK2Q13177 524 aa13.37□□□□□ -0.27
CLSTN3-209ENST00000539982 DUSP6Q16828 381 aa13.37□□□□□ -0.27
CLSTN3-209ENST00000539982 PDE12Q6L8Q7 609 aaKnown RBP13.37□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms