RNA–Protein interactions for RNA: ENST00000539504.5

SYNE1-237, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 3,768 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-237ENST00000539504 WDR66Q8TBY9 1149 aa12.3□□□□□ -0.44
SYNE1-237ENST00000539504 U2AF1L4Q8WU68 220 aaKnown RBP12.3□□□□□ -0.44
SYNE1-237ENST00000539504 BUD13Q9BRD0 619 aaKnown RBP eCLIP12.3□□□□□ -0.44
SYNE1-237ENST00000539504 ACTR5Q9H9F9 607 aaPredicted RBP12.3□□□□□ -0.44
SYNE1-237ENST00000539504 SEPT11Q9NVA2 429 aaKnown RBP12.3□□□□□ -0.44
SYNE1-237ENST00000539504 HDAC9Q9UKV0 1011 aa12.3□□□□□ -0.44
SYNE1-237ENST00000539504 PDIA5Q14554 519 aa12.29□□□□□ -0.44
SYNE1-237ENST00000539504 GRIK5Q16478 980 aa12.29□□□□□ -0.44
SYNE1-237ENST00000539504 RAPGEF5Q92565 580 aa12.29□□□□□ -0.44
SYNE1-237ENST00000539504 ARMCX3Q9UH62 379 aaPredicted RBP12.29□□□□□ -0.44
SYNE1-237ENST00000539504 CACNA1SQ13698 1873 aa12.29□□□□□ -0.44
SYNE1-237ENST00000539504 H2AFZP0C0S5 128 aa12.29□□□□□ -0.44
SYNE1-237ENST00000539504 PLA2G4BP0C869 781 aa12.29□□□□□ -0.44
SYNE1-237ENST00000539504 EXOC3L4Q17RC7 722 aa12.29□□□□□ -0.44
SYNE1-237ENST00000539504 H2AFVQ71UI9 128 aa12.29□□□□□ -0.44
SYNE1-237ENST00000539504 MDM1Q8TC05 714 aa12.29□□□□□ -0.44
SYNE1-237ENST00000539504 LMBR1Q8WVP7 490 aa12.29□□□□□ -0.44
SYNE1-237ENST00000539504 POTEB3A0JP26 581 aa12.29□□□□□ -0.44
SYNE1-237ENST00000539504 POTECB2RU33 542 aa12.29□□□□□ -0.44
SYNE1-237ENST00000539504 BTDP43251 543 aa12.29□□□□□ -0.44
SYNE1-237ENST00000539504 GSCP56915 257 aaPredicted RBP12.29□□□□□ -0.44
SYNE1-237ENST00000539504 NEDD9Q14511 834 aa12.29□□□□□ -0.44
SYNE1-237ENST00000539504 POTEBQ6S5H4 581 aa12.29□□□□□ -0.44
SYNE1-237ENST00000539504 ARAP2Q8WZ64 1704 aa12.29□□□□□ -0.44
SYNE1-237ENST00000539504 DNAJC19Q96DA6 116 aa12.29□□□□□ -0.44
SYNE1-237ENST00000539504 CNOT8Q9UFF9 292 aaKnown RBP12.29□□□□□ -0.44
SYNE1-237ENST00000539504 ODF2LQ9ULJ1 636 aa12.29□□□□□ -0.44
SYNE1-237ENST00000539504 DCDC2CA8MYV0 355 aa12.28□□□□□ -0.44
SYNE1-237ENST00000539504 TRAPPC3O43617 180 aa12.28□□□□□ -0.44
SYNE1-237ENST00000539504 PDHBP11177 359 aa12.28□□□□□ -0.44
SYNE1-237ENST00000539504 MSL1Q68DK7 614 aa12.28□□□□□ -0.44
SYNE1-237ENST00000539504 PARP9Q8IXQ6 854 aa12.28□□□□□ -0.44
SYNE1-237ENST00000539504 SETDB2Q96T68 719 aa12.28□□□□□ -0.44
SYNE1-237ENST00000539504 CCDC113Q9H0I3 377 aa12.28□□□□□ -0.44
SYNE1-237ENST00000539504 AIPL1Q9NZN9 384 aa12.28□□□□□ -0.44
SYNE1-237ENST00000539504 LEMD3Q9Y2U8 911 aa12.28□□□□□ -0.44
SYNE1-237ENST00000539504 CASZ1Q86V15 1759 aa12.28□□□□□ -0.44
SYNE1-237ENST00000539504 CTNND1O60716 968 aaKnown RBP12.28□□□□□ -0.44
SYNE1-237ENST00000539504 ZCWPW2Q504Y3 356 aa12.28□□□□□ -0.44
SYNE1-237ENST00000539504 TBC1D9BQ66K14 1250 aa12.28□□□□□ -0.44
SYNE1-237ENST00000539504 ARHGAP27Q6ZUM4 889 aa12.28□□□□□ -0.44
SYNE1-237ENST00000539504 NEDD1Q8NHV4 660 aa12.28□□□□□ -0.44
SYNE1-237ENST00000539504 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP12.28□□□□□ -0.44
SYNE1-237ENST00000539504 TRIM51Q9BSJ1 452 aa12.28□□□□□ -0.44
SYNE1-237ENST00000539504 NAGPAQ9UK23 515 aa12.28□□□□□ -0.44
SYNE1-237ENST00000539504 UCHL3P15374 230 aa12.28□□□□□ -0.44
SYNE1-237ENST00000539504 ABCB4P21439 1286 aa12.28□□□□□ -0.44
SYNE1-237ENST00000539504 DDR1Q08345 913 aa12.28□□□□□ -0.44
SYNE1-237ENST00000539504 ORC2Q13416 577 aaPredicted RBP12.28□□□□□ -0.44
SYNE1-237ENST00000539504 CYB5D1Q6P9G0 228 aa12.28□□□□□ -0.44
SYNE1-237ENST00000539504 CLEC10AQ8IUN9 316 aa12.28□□□□□ -0.44
SYNE1-237ENST00000539504 UHMK1Q8TAS1 419 aaKnown RBP12.28□□□□□ -0.44
SYNE1-237ENST00000539504 SCFD2Q8WU76 684 aa12.28□□□□□ -0.44
SYNE1-237ENST00000539504 N4BP2L2Q92802 583 aaPredicted RBP12.28□□□□□ -0.44
SYNE1-237ENST00000539504 OSBPL7Q9BZF2 842 aa12.28□□□□□ -0.44
SYNE1-237ENST00000539504 CLSTN1O94985 981 aa12.27□□□□□ -0.44
SYNE1-237ENST00000539504 FGGP02679 453 aa12.27□□□□□ -0.44
SYNE1-237ENST00000539504 XRCC5P13010 732 aaKnown RBP12.27□□□□□ -0.44
SYNE1-237ENST00000539504 EZRP15311 586 aaKnown RBP12.27□□□□□ -0.44
SYNE1-237ENST00000539504 DRP2Q13474 957 aa12.27□□□□□ -0.44
SYNE1-237ENST00000539504 TMEM119Q4V9L6 283 aa12.27□□□□□ -0.44
SYNE1-237ENST00000539504 CLEC4GQ6UXB4 293 aa12.27□□□□□ -0.44
SYNE1-237ENST00000539504 ACTRT1Q8TDG2 376 aa12.27□□□□□ -0.44
SYNE1-237ENST00000539504 SCFD1Q8WVM8 642 aa12.27□□□□□ -0.44
SYNE1-237ENST00000539504 PAGR1Q9BTK6 254 aa12.27□□□□□ -0.44
SYNE1-237ENST00000539504 NT5C3AQ9H0P0 336 aa12.27□□□□□ -0.44
SYNE1-237ENST00000539504 CCDC188H7C350 402 aa12.27□□□□□ -0.45
SYNE1-237ENST00000539504 DNM1LO00429 736 aa12.27□□□□□ -0.45
SYNE1-237ENST00000539504 AFPP02771 609 aaKnown RBP12.27□□□□□ -0.45
SYNE1-237ENST00000539504 PICALMQ13492 652 aa12.27□□□□□ -0.45
SYNE1-237ENST00000539504 PLCB4Q15147 1175 aa12.27□□□□□ -0.45
SYNE1-237ENST00000539504 C10orf76Q5T2E6 689 aa12.27□□□□□ -0.45
SYNE1-237ENST00000539504 EMC10Q5UCC4 262 aa12.27□□□□□ -0.45
SYNE1-237ENST00000539504 TPCN2Q8NHX9 752 aa12.27□□□□□ -0.45
SYNE1-237ENST00000539504 HVCN1Q96D96 273 aa12.27□□□□□ -0.45
SYNE1-237ENST00000539504 PSMD1Q99460 953 aa12.27□□□□□ -0.45
SYNE1-237ENST00000539504 GANQ9H2C0 597 aa12.27□□□□□ -0.45
SYNE1-237ENST00000539504 BAIAP2L1Q9UHR4 511 aa12.27□□□□□ -0.45
SYNE1-237ENST00000539504 SLC12A6Q9UHW9 1150 aa12.27□□□□□ -0.45
SYNE1-237ENST00000539504 AMFRQ9UKV5 643 aa12.27□□□□□ -0.45
SYNE1-237ENST00000539504 ECHS1P30084 290 aa12.27□□□□□ -0.45
SYNE1-237ENST00000539504 COPB2P35606 906 aa12.27□□□□□ -0.45
SYNE1-237ENST00000539504 SLC16A2P36021 539 aa12.27□□□□□ -0.45
SYNE1-237ENST00000539504 SEPT2Q15019 361 aa12.27□□□□□ -0.45
SYNE1-237ENST00000539504 PPP1R7Q15435 360 aa12.27□□□□□ -0.45
SYNE1-237ENST00000539504 SPRED3Q2MJR0 410 aa12.27□□□□□ -0.45
SYNE1-237ENST00000539504 ANKRD20A8PQ5CZ79 823 aa12.27□□□□□ -0.45
SYNE1-237ENST00000539504 C6orf89Q6UWU4 347 aa12.27□□□□□ -0.45
SYNE1-237ENST00000539504 C1orf131Q8NDD1 294 aaKnown RBP12.27□□□□□ -0.45
SYNE1-237ENST00000539504 FMO2Q99518 471 aa12.27□□□□□ -0.45
SYNE1-237ENST00000539504 PCDHB13Q9Y5F0 798 aa12.27□□□□□ -0.45
SYNE1-237ENST00000539504 BZW2Q9Y6E2 419 aaKnown RBP12.27□□□□□ -0.45
SYNE1-237ENST00000539504 ANKRD36CQ5JPF3 1778 aa12.27□□□□□ -0.45
SYNE1-237ENST00000539504 H0YGN5 161 aa12.26□□□□□ -0.45
SYNE1-237ENST00000539504 MEIS1O00470 390 aa12.26□□□□□ -0.45
SYNE1-237ENST00000539504 RASSF9O75901 435 aa12.26□□□□□ -0.45
SYNE1-237ENST00000539504 GFPT2O94808 682 aa12.26□□□□□ -0.45
SYNE1-237ENST00000539504 KRT13P13646 458 aa12.26□□□□□ -0.45
SYNE1-237ENST00000539504 STAT3P40763 770 aa12.26□□□□□ -0.45
SYNE1-237ENST00000539504 FUKQ8N0W3 1084 aa12.26□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms