RNA–Protein interactions for RNA: ENST00000538995.1

RTN3-209, Transcript of reticulon 3, humanhuman

TSL 2

Gene RTN3, Length 814 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-209ENST00000538995 HERC6Q8IVU3 1022 aa13.14□□□□□ -0.31
RTN3-209ENST00000538995 MYLIPQ8WY64 445 aa13.14□□□□□ -0.31
RTN3-209ENST00000538995 PCYT2Q99447 389 aa13.14□□□□□ -0.31
RTN3-209ENST00000538995 SLKQ9H2G2 1235 aaPredicted RBP13.14□□□□□ -0.31
RTN3-209ENST00000538995 NKX2-4Q9H2Z4 354 aa13.14□□□□□ -0.31
RTN3-209ENST00000538995 TBC1D22BQ9NU19 505 aa13.14□□□□□ -0.31
RTN3-209ENST00000538995 TUBE1Q9UJT0 475 aa13.14□□□□□ -0.31
RTN3-209ENST00000538995 PCDHA4Q9UN74 947 aa13.14□□□□□ -0.31
RTN3-209ENST00000538995 IGKV6D-21A0A0A0MT36 114 aa13.13□□□□□ -0.31
RTN3-209ENST00000538995 KIF28PB7ZC32 967 aa13.13□□□□□ -0.31
RTN3-209ENST00000538995 ADAMTS3O15072 1205 aa13.13□□□□□ -0.31
RTN3-209ENST00000538995 DHX15O43143 795 aaKnown RBP13.13□□□□□ -0.31
RTN3-209ENST00000538995 PPFIA3O75145 1194 aa13.13□□□□□ -0.31
RTN3-209ENST00000538995 CCNE2O96020 404 aa13.13□□□□□ -0.31
RTN3-209ENST00000538995 STAT5BP51692 787 aa13.13□□□□□ -0.31
RTN3-209ENST00000538995 USP11P51784 963 aa13.13□□□□□ -0.31
RTN3-209ENST00000538995 RABGGTBP53611 331 aa13.13□□□□□ -0.31
RTN3-209ENST00000538995 SCRN1Q12765 414 aa13.13□□□□□ -0.31
RTN3-209ENST00000538995 STK3Q13188 491 aa13.13□□□□□ -0.31
RTN3-209ENST00000538995 IKBKEQ14164 716 aa13.13□□□□□ -0.31
RTN3-209ENST00000538995 PPP2R2DQ66LE6 453 aa13.13□□□□□ -0.31
RTN3-209ENST00000538995 ZNF746Q6NUN9 644 aaPredicted RBP13.13□□□□□ -0.31
RTN3-209ENST00000538995 RSPH3Q86UC2 560 aa13.13□□□□□ -0.31
RTN3-209ENST00000538995 MAFAQ8NHW3 353 aaPredicted RBP13.13□□□□□ -0.31
RTN3-209ENST00000538995 RASGRP4Q8TDF6 673 aa13.13□□□□□ -0.31
RTN3-209ENST00000538995 LARP6Q9BRS8 491 aaKnown RBP13.13□□□□□ -0.31
RTN3-209ENST00000538995 ZNF577Q9BSK1 485 aa13.13□□□□□ -0.31
RTN3-209ENST00000538995 TCEAL9Q9UHQ7 104 aa13.13□□□□□ -0.31
RTN3-209ENST00000538995 TPCN1Q9ULQ1 816 aa13.13□□□□□ -0.31
RTN3-209ENST00000538995 DOCK5Q9H7D0 1870 aa13.12□□□□□ -0.31
RTN3-209ENST00000538995 CHD7Q9P2D1 2997 aa13.12□□□□□ -0.31
RTN3-209ENST00000538995 XBP1P17861 261 aa13.12□□□□□ -0.31
RTN3-209ENST00000538995 AK2P54819 239 aa13.12□□□□□ -0.31
RTN3-209ENST00000538995 KRT76Q01546 638 aa13.12□□□□□ -0.31
RTN3-209ENST00000538995 MKRN4PQ13434 485 aaPredicted RBP13.12□□□□□ -0.31
RTN3-209ENST00000538995 PRR16Q569H4 304 aa13.12□□□□□ -0.31
RTN3-209ENST00000538995 PLEKHG4Q58EX7 1191 aa13.12□□□□□ -0.31
RTN3-209ENST00000538995 FAM160B1Q5W0V3 765 aa13.12□□□□□ -0.31
RTN3-209ENST00000538995 MIS18BP1Q6P0N0 1132 aa13.12□□□□□ -0.31
RTN3-209ENST00000538995 ABHD15Q6UXT9 468 aa13.12□□□□□ -0.31
RTN3-209ENST00000538995 SMAP1Q8IYB5 467 aaPredicted RBP13.12□□□□□ -0.31
RTN3-209ENST00000538995 BLIDQ8IZY5 108 aa13.12□□□□□ -0.31
RTN3-209ENST00000538995 SLC17A8Q8NDX2 589 aa13.12□□□□□ -0.31
RTN3-209ENST00000538995 SEPT8Q92599 483 aa13.12□□□□□ -0.31
RTN3-209ENST00000538995 APBB2Q92870 758 aa13.12□□□□□ -0.31
RTN3-209ENST00000538995 LENG9Q96B70 501 aa13.12□□□□□ -0.31
RTN3-209ENST00000538995 GAS2L1Q99501 681 aaPredicted RBP13.12□□□□□ -0.31
RTN3-209ENST00000538995 TRPC6Q9Y210 931 aa13.12□□□□□ -0.31
RTN3-209ENST00000538995 TET1Q8NFU7 2136 aa13.12□□□□□ -0.31
RTN3-209ENST00000538995 TRIP12Q14669 1992 aaPredicted RBP13.11□□□□□ -0.31
RTN3-209ENST00000538995 POTEB3A0JP26 581 aa13.11□□□□□ -0.31
RTN3-209ENST00000538995 M0R2N6 131 aa13.11□□□□□ -0.31
RTN3-209ENST00000538995 BACH1O14867 736 aa13.11□□□□□ -0.31
RTN3-209ENST00000538995 CA3P07451 260 aa13.11□□□□□ -0.31
RTN3-209ENST00000538995 CTSHP09668 335 aa13.11□□□□□ -0.31
RTN3-209ENST00000538995 INSRRP14616 1297 aa13.11□□□□□ -0.31
RTN3-209ENST00000538995 PLCB4Q15147 1175 aa13.11□□□□□ -0.31
RTN3-209ENST00000538995 NPY5RQ15761 445 aa13.11□□□□□ -0.31
RTN3-209ENST00000538995 MARCH8Q5T0T0 291 aa13.11□□□□□ -0.31
RTN3-209ENST00000538995 POTEBQ6S5H4 581 aa13.11□□□□□ -0.31
RTN3-209ENST00000538995 MOXD1Q6UVY6 613 aa13.11□□□□□ -0.31
RTN3-209ENST00000538995 RUFY4Q6ZNE9 571 aa13.11□□□□□ -0.31
RTN3-209ENST00000538995 DBF4BQ8NFT6 615 aa13.11□□□□□ -0.31
RTN3-209ENST00000538995 ATP8B4Q8TF62 1192 aa13.11□□□□□ -0.31
RTN3-209ENST00000538995 WASF1Q92558 559 aa13.11□□□□□ -0.31
RTN3-209ENST00000538995 A0A0C4DFX4 3053 aa13.11□□□□□ -0.31
RTN3-209ENST00000538995 COL1A2P08123 1366 aa13.1□□□□□ -0.31
RTN3-209ENST00000538995 DDX39AO00148 427 aaKnown RBP13.1□□□□□ -0.31
RTN3-209ENST00000538995 TLL1O43897 1013 aa13.1□□□□□ -0.31
RTN3-209ENST00000538995 HBP1O60381 514 aa13.1□□□□□ -0.31
RTN3-209ENST00000538995 GJB5O95377 273 aa13.1□□□□□ -0.31
RTN3-209ENST00000538995 AMHP03971 560 aa13.1□□□□□ -0.31
RTN3-209ENST00000538995 MYOGP15173 224 aa13.1□□□□□ -0.31
RTN3-209ENST00000538995 DEFB103AP81534 67 aa13.1□□□□□ -0.31
RTN3-209ENST00000538995 MGAT3Q09327 533 aa13.1□□□□□ -0.31
RTN3-209ENST00000538995 TCTN1Q2MV58 587 aa13.1□□□□□ -0.31
RTN3-209ENST00000538995 Q4G0T1 1027 aa13.1□□□□□ -0.31
RTN3-209ENST00000538995 KRT25Q7Z3Z0 450 aa13.1□□□□□ -0.31
RTN3-209ENST00000538995 CCDC60Q8IWA6 550 aaPredicted RBP13.1□□□□□ -0.31
RTN3-209ENST00000538995 TBCKQ8TEA7 893 aa13.1□□□□□ -0.31
RTN3-209ENST00000538995 RIT2Q99578 217 aa13.1□□□□□ -0.31
RTN3-209ENST00000538995 PRDM12Q9H4Q4 367 aa13.1□□□□□ -0.31
RTN3-209ENST00000538995 ZNF302Q9NR11 478 aa13.1□□□□□ -0.31
RTN3-209ENST00000538995 PCDHA2Q9Y5H9 948 aa13.1□□□□□ -0.31
RTN3-209ENST00000538995 PCDHA10Q9Y5I2 948 aa13.1□□□□□ -0.31
RTN3-209ENST00000538995 CYP3A7-CYP3A51PA0A087WV96 503 aa13.09□□□□□ -0.31
RTN3-209ENST00000538995 WDR64B1ANS9 1081 aa13.09□□□□□ -0.31
RTN3-209ENST00000538995 MSH4O15457 936 aa13.09□□□□□ -0.31
RTN3-209ENST00000538995 EDIL3O43854 480 aa13.09□□□□□ -0.31
RTN3-209ENST00000538995 CHRNA1P02708 482 aa13.09□□□□□ -0.31
RTN3-209ENST00000538995 PSAPP07602 524 aa13.09□□□□□ -0.31
RTN3-209ENST00000538995 CYP3A7P24462 503 aa13.09□□□□□ -0.31
RTN3-209ENST00000538995 IGBP1P78318 339 aa13.09□□□□□ -0.31
RTN3-209ENST00000538995 MRPS6P82932 125 aaKnown RBP13.09□□□□□ -0.31
RTN3-209ENST00000538995 NONOQ15233 471 aaKnown RBP eCLIP13.09□□□□□ -0.31
RTN3-209ENST00000538995 PDXDC2PQ6P474 469 aa13.09□□□□□ -0.31
RTN3-209ENST00000538995 FAM43BQ6ZT52 329 aaPredicted RBP13.09□□□□□ -0.31
RTN3-209ENST00000538995 SLC5A5Q92911 643 aa13.09□□□□□ -0.31
RTN3-209ENST00000538995 GTF3C6Q969F1 213 aa13.09□□□□□ -0.31
RTN3-209ENST00000538995 MBOAT7Q96N66 472 aa13.09□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms