RNA–Protein interactions for RNA: ENST00000538120.5

CLIP1-210, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 3

Gene CLIP1, Length 2,472 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-210ENST00000538120 MRPL44Q9H9J2 332 aaKnown RBP11.92□□□□□ -0.5
CLIP1-210ENST00000538120 PCDHA2Q9Y5H9 948 aa11.92□□□□□ -0.5
CLIP1-210ENST00000538120 ABCB11O95342 1321 aa11.91□□□□□ -0.5
CLIP1-210ENST00000538120 EML1O00423 815 aa11.91□□□□□ -0.5
CLIP1-210ENST00000538120 CTNND1O60716 968 aaKnown RBP11.91□□□□□ -0.5
CLIP1-210ENST00000538120 RPA1P27694 616 aa11.91□□□□□ -0.5
CLIP1-210ENST00000538120 SLC30A10Q6XR72 485 aa11.91□□□□□ -0.5
CLIP1-210ENST00000538120 FGFBP2Q9BYJ0 223 aa11.91□□□□□ -0.5
CLIP1-210ENST00000538120 UBXN6Q9BZV1 441 aa11.91□□□□□ -0.5
CLIP1-210ENST00000538120 CALCOCO1Q9P1Z2 691 aa11.91□□□□□ -0.5
CLIP1-210ENST00000538120 SOWAHDA6NJG2 315 aa11.91□□□□□ -0.5
CLIP1-210ENST00000538120 ICAM1P05362 532 aa11.91□□□□□ -0.5
CLIP1-210ENST00000538120 SSBP05455 408 aaKnown RBP eCLIP11.91□□□□□ -0.5
CLIP1-210ENST00000538120 CAPN2P17655 700 aa11.91□□□□□ -0.5
CLIP1-210ENST00000538120 ZNF76P36508 570 aa11.91□□□□□ -0.5
CLIP1-210ENST00000538120 UBXN2AP68543 259 aa11.91□□□□□ -0.5
CLIP1-210ENST00000538120 KIF4BQ2VIQ3 1234 aa11.91□□□□□ -0.5
CLIP1-210ENST00000538120 MIIPQ5JXC2 388 aa11.91□□□□□ -0.5
CLIP1-210ENST00000538120 RAD9BQ6WBX8 426 aa11.91□□□□□ -0.5
CLIP1-210ENST00000538120 RSRC2Q7L4I2 434 aaKnown RBP11.91□□□□□ -0.5
CLIP1-210ENST00000538120 GPBP1Q86WP2 473 aa11.91□□□□□ -0.5
CLIP1-210ENST00000538120 CLEC4DQ8WXI8 215 aa11.91□□□□□ -0.5
CLIP1-210ENST00000538120 SGSM3Q96HU1 749 aa11.91□□□□□ -0.5
CLIP1-210ENST00000538120 CNOT6LQ96LI5 555 aaKnown RBP11.91□□□□□ -0.5
CLIP1-210ENST00000538120 TUBGCP2Q9BSJ2 902 aa11.91□□□□□ -0.5
CLIP1-210ENST00000538120 GINM1Q9NU53 330 aa11.91□□□□□ -0.5
CLIP1-210ENST00000538120 PANK4Q9NVE7 773 aa11.91□□□□□ -0.5
CLIP1-210ENST00000538120 MAGEC2Q9UBF1 373 aaPredicted RBP11.91□□□□□ -0.5
CLIP1-210ENST00000538120 A0A1W2PQC6 194 aa11.9□□□□□ -0.5
CLIP1-210ENST00000538120 FRMD3A2A2Y4 597 aa11.9□□□□□ -0.5
CLIP1-210ENST00000538120 RASSF10A6NK89 507 aa11.9□□□□□ -0.5
CLIP1-210ENST00000538120 MEIS1O00470 390 aa11.9□□□□□ -0.5
CLIP1-210ENST00000538120 WDR46O15213 610 aaKnown RBP11.9□□□□□ -0.5
CLIP1-210ENST00000538120 HSD17B4P51659 736 aa11.9□□□□□ -0.5
CLIP1-210ENST00000538120 SMC1AQ14683 1233 aaKnown RBP11.9□□□□□ -0.5
CLIP1-210ENST00000538120 HAUS3Q68CZ6 603 aa11.9□□□□□ -0.5
CLIP1-210ENST00000538120 CCDC51Q96ER9 411 aa11.9□□□□□ -0.5
CLIP1-210ENST00000538120 B4DLN1 442 aa11.89□□□□□ -0.51
CLIP1-210ENST00000538120 PSMD10O75832 226 aa11.89□□□□□ -0.51
CLIP1-210ENST00000538120 TFRCP02786 760 aaKnown RBP11.89□□□□□ -0.51
CLIP1-210ENST00000538120 HOXA7P31268 230 aaPredicted RBP11.89□□□□□ -0.51
CLIP1-210ENST00000538120 OTOP1Q7RTM1 612 aa11.89□□□□□ -0.51
CLIP1-210ENST00000538120 CNGA4Q8IV77 575 aa11.89□□□□□ -0.51
CLIP1-210ENST00000538120 GPR161Q8N6U8 529 aaKnown RBP11.89□□□□□ -0.51
CLIP1-210ENST00000538120 PRPF38AQ8NAV1 312 aaKnown RBP11.89□□□□□ -0.51
CLIP1-210ENST00000538120 ERMNQ8TAM6 284 aa11.89□□□□□ -0.51
CLIP1-210ENST00000538120 LPAR1Q92633 364 aa11.89□□□□□ -0.51
CLIP1-210ENST00000538120 SLC5A5Q92911 643 aa11.89□□□□□ -0.51
CLIP1-210ENST00000538120 SLF1Q9BQI6 1058 aa11.89□□□□□ -0.51
CLIP1-210ENST00000538120 COL20A1Q9P218 1284 aa11.89□□□□□ -0.51
CLIP1-210ENST00000538120 ZNF112Q9UJU3 913 aa11.89□□□□□ -0.51
CLIP1-210ENST00000538120 ATAD5Q96QE3 1844 aa11.89□□□□□ -0.51
CLIP1-210ENST00000538120 ZCWPW2Q504Y3 356 aa11.89□□□□□ -0.51
CLIP1-210ENST00000538120 FAM26FQ5R3K3 315 aa11.89□□□□□ -0.51
CLIP1-210ENST00000538120 LRRC55Q6ZSA7 311 aa11.89□□□□□ -0.51
CLIP1-210ENST00000538120 SYT2Q8N9I0 419 aaPredicted RBP11.89□□□□□ -0.51
CLIP1-210ENST00000538120 EIF2AK1Q9BQI3 630 aaKnown RBP11.89□□□□□ -0.51
CLIP1-210ENST00000538120 POLR3CQ9BUI4 534 aaPredicted RBP11.89□□□□□ -0.51
CLIP1-210ENST00000538120 NAA15Q9BXJ9 866 aaKnown RBP11.89□□□□□ -0.51
CLIP1-210ENST00000538120 FUT8Q9BYC5 575 aa11.89□□□□□ -0.51
CLIP1-210ENST00000538120 LZTFL1Q9NQ48 299 aa11.89□□□□□ -0.51
CLIP1-210ENST00000538120 ABHD10Q9NUJ1 306 aa11.89□□□□□ -0.51
CLIP1-210ENST00000538120 CCPG1Q9ULG6 757 aa11.89□□□□□ -0.51
CLIP1-210ENST00000538120 NFIBO00712 420 aa11.88□□□□□ -0.51
CLIP1-210ENST00000538120 ARP10275 920 aa11.88□□□□□ -0.51
CLIP1-210ENST00000538120 DNM2P50570 870 aa11.88□□□□□ -0.51
CLIP1-210ENST00000538120 ERVK-24P63145 666 aa11.88□□□□□ -0.51
CLIP1-210ENST00000538120 GHRHRQ02643 423 aa11.88□□□□□ -0.51
CLIP1-210ENST00000538120 TRIM14Q14142 442 aa11.88□□□□□ -0.51
CLIP1-210ENST00000538120 GIT2Q14161 759 aa11.88□□□□□ -0.51
CLIP1-210ENST00000538120 PRAMEF18Q5VWM3 479 aa11.88□□□□□ -0.51
CLIP1-210ENST00000538120 FOXR2Q6PJQ5 311 aa11.88□□□□□ -0.51
CLIP1-210ENST00000538120 FAM114A1Q8IWE2 563 aa11.88□□□□□ -0.51
CLIP1-210ENST00000538120 TRPM4Q8TD43 1214 aa11.88□□□□□ -0.51
CLIP1-210ENST00000538120 HOOK2Q96ED9 719 aa11.88□□□□□ -0.51
CLIP1-210ENST00000538120 HSD17B14Q9BPX1 270 aa11.88□□□□□ -0.51
CLIP1-210ENST00000538120 SLC38A10Q9HBR0 1119 aa11.88□□□□□ -0.51
CLIP1-210ENST00000538120 RGL1Q9NZL6 768 aa11.88□□□□□ -0.51
CLIP1-210ENST00000538120 RPTORQ8N122 1335 aa11.88□□□□□ -0.51
CLIP1-210ENST00000538120 TTC26A0AVF1 554 aa11.88□□□□□ -0.51
CLIP1-210ENST00000538120 VGLL3A8MV65 326 aa11.88□□□□□ -0.51
CLIP1-210ENST00000538120 H3BQF6 201 aa11.88□□□□□ -0.51
CLIP1-210ENST00000538120 TULP2O00295 520 aa11.88□□□□□ -0.51
CLIP1-210ENST00000538120 KLK7P49862 253 aa11.88□□□□□ -0.51
CLIP1-210ENST00000538120 LRRC63Q05C16 580 aa11.88□□□□□ -0.51
CLIP1-210ENST00000538120 RAD51AP2Q09MP3 1159 aa11.88□□□□□ -0.51
CLIP1-210ENST00000538120 PABPC4Q13310 644 aaKnown RBP eCLIP11.88□□□□□ -0.51
CLIP1-210ENST00000538120 MTMR2Q13614 643 aa11.88□□□□□ -0.51
CLIP1-210ENST00000538120 CEP55Q53EZ4 464 aa11.88□□□□□ -0.51
CLIP1-210ENST00000538120 ANGEL2Q5VTE6 544 aaKnown RBP11.88□□□□□ -0.51
CLIP1-210ENST00000538120 CCDC65Q8IXS2 484 aa11.88□□□□□ -0.51
CLIP1-210ENST00000538120 MYOCDQ8IZQ8 938 aa11.88□□□□□ -0.51
CLIP1-210ENST00000538120 TBC1D7Q9P0N9 293 aa11.88□□□□□ -0.51
CLIP1-210ENST00000538120 FZD1Q9UP38 647 aa11.88□□□□□ -0.51
CLIP1-210ENST00000538120 DNM3Q9UQ16 869 aa11.88□□□□□ -0.51
CLIP1-210ENST00000538120 PITPNM2Q9BZ72 1349 aa11.88□□□□□ -0.51
CLIP1-210ENST00000538120 TPM1P09493 284 aa11.87□□□□□ -0.51
CLIP1-210ENST00000538120 VCAM1P19320 739 aa11.87□□□□□ -0.51
CLIP1-210ENST00000538120 MTIF2P46199 727 aaKnown RBP11.87□□□□□ -0.51
CLIP1-210ENST00000538120 CYP4A11Q02928 519 aa11.87□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms