RNA–Protein interactions for RNA: ENST00000537490.1

USP28-203, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 567 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-203ENST00000537490 SAMD11Q96NU1 681 aa9.68□□□□□ -0.86
USP28-203ENST00000537490 EPHX3Q9H6B9 360 aa9.68□□□□□ -0.86
USP28-203ENST00000537490 UBE2ZQ9H832 354 aaPredicted RBP9.68□□□□□ -0.86
USP28-203ENST00000537490 RIC8AQ9NPQ8 531 aa9.68□□□□□ -0.86
USP28-203ENST00000537490 KCNH7Q9NS40 1196 aa9.68□□□□□ -0.86
USP28-203ENST00000537490 RBM28Q9NW13 759 aaKnown RBP9.68□□□□□ -0.86
USP28-203ENST00000537490 TMEM260Q9NX78 707 aa9.68□□□□□ -0.86
USP28-203ENST00000537490 SLC9A2Q9UBY0 812 aa9.68□□□□□ -0.86
USP28-203ENST00000537490 TUBE1Q9UJT0 475 aa9.68□□□□□ -0.86
USP28-203ENST00000537490 CDY2AQ9Y6F7 541 aa9.68□□□□□ -0.86
USP28-203ENST00000537490 SMCO2A6NFE2 343 aa9.67□□□□□ -0.86
USP28-203ENST00000537490 STXBP3O00186 592 aa9.67□□□□□ -0.86
USP28-203ENST00000537490 ZBTB43O43298 467 aa9.67□□□□□ -0.86
USP28-203ENST00000537490 ITGB3BPQ13352 177 aaPredicted RBP9.67□□□□□ -0.86
USP28-203ENST00000537490 RTN1Q16799 776 aa9.67□□□□□ -0.86
USP28-203ENST00000537490 FBXO47Q5MNV8 452 aa9.67□□□□□ -0.86
USP28-203ENST00000537490 RSPH3Q86UC2 560 aa9.67□□□□□ -0.86
USP28-203ENST00000537490 GADD45GIP1Q8TAE8 222 aaPredicted RBP9.67□□□□□ -0.86
USP28-203ENST00000537490 KHSRPQ92945 711 aaKnown RBP eCLIP9.67□□□□□ -0.86
USP28-203ENST00000537490 IL17RAQ96F46 866 aa9.67□□□□□ -0.86
USP28-203ENST00000537490 ANO3Q9BYT9 981 aa9.67□□□□□ -0.86
USP28-203ENST00000537490 AGO3Q9H9G7 860 aaKnown RBP9.67□□□□□ -0.86
USP28-203ENST00000537490 AGO4Q9HCK5 861 aaKnown RBP9.67□□□□□ -0.86
USP28-203ENST00000537490 JPH1Q9HDC5 661 aaPredicted RBP9.67□□□□□ -0.86
USP28-203ENST00000537490 CD320Q9NPF0 282 aa9.67□□□□□ -0.86
USP28-203ENST00000537490 DOCK5Q9H7D0 1870 aa9.67□□□□□ -0.86
USP28-203ENST00000537490 NFASCO94856 1347 aa9.66□□□□□ -0.86
USP28-203ENST00000537490 KLF18A0A0U1RQI7 1052 aa9.66□□□□□ -0.86
USP28-203ENST00000537490 RRN3P2A6NIE6 340 aa9.66□□□□□ -0.86
USP28-203ENST00000537490 GOLGA8AA7E2F4 631 aa9.66□□□□□ -0.86
USP28-203ENST00000537490 GOLGA8BA8MQT2 603 aa9.66□□□□□ -0.86
USP28-203ENST00000537490 MEIS1O00470 390 aa9.66□□□□□ -0.86
USP28-203ENST00000537490 ADAMTS3O15072 1205 aa9.66□□□□□ -0.86
USP28-203ENST00000537490 ATG7O95352 703 aa9.66□□□□□ -0.86
USP28-203ENST00000537490 FOSP01100 380 aaPredicted RBP9.66□□□□□ -0.86
USP28-203ENST00000537490 LINC00271P0C7V0 271 aa9.66□□□□□ -0.86
USP28-203ENST00000537490 CPA1P15085 419 aa9.66□□□□□ -0.86
USP28-203ENST00000537490 KCNA5P22460 613 aa9.66□□□□□ -0.86
USP28-203ENST00000537490 CD52P31358 61 aa9.66□□□□□ -0.86
USP28-203ENST00000537490 ADD1P35611 737 aaKnown RBP9.66□□□□□ -0.86
USP28-203ENST00000537490 CLK2P49760 499 aaKnown RBP9.66□□□□□ -0.86
USP28-203ENST00000537490 STAT5BP51692 787 aa9.66□□□□□ -0.86
USP28-203ENST00000537490 ADCY7P51828 1080 aa9.66□□□□□ -0.86
USP28-203ENST00000537490 ACTR2P61160 394 aa9.66□□□□□ -0.86
USP28-203ENST00000537490 MRPS6P82932 125 aaKnown RBP9.66□□□□□ -0.86
USP28-203ENST00000537490 PLCB4Q15147 1175 aa9.66□□□□□ -0.86
USP28-203ENST00000537490 PTPROQ16827 1216 aa9.66□□□□□ -0.86
USP28-203ENST00000537490 LEXMQ3ZCV2 418 aa9.66□□□□□ -0.86
USP28-203ENST00000537490 CEP55Q53EZ4 464 aa9.66□□□□□ -0.86
USP28-203ENST00000537490 TCEAL5Q5H9L2 206 aa9.66□□□□□ -0.86
USP28-203ENST00000537490 PPP1R18Q6NYC8 613 aa9.66□□□□□ -0.86
USP28-203ENST00000537490 CENPQQ7L2Z9 268 aaPredicted RBP9.66□□□□□ -0.86
USP28-203ENST00000537490 RTN4RL1Q86UN2 441 aaPredicted RBP9.66□□□□□ -0.86
USP28-203ENST00000537490 FIBCD1Q8N539 461 aa9.66□□□□□ -0.86
USP28-203ENST00000537490 BANK1Q8NDB2 785 aa9.66□□□□□ -0.86
USP28-203ENST00000537490 TRAPPC12Q8WVT3 735 aa9.66□□□□□ -0.86
USP28-203ENST00000537490 LINC01599Q8WXQ3 324 aa9.66□□□□□ -0.86
USP28-203ENST00000537490 SDF4Q9BRK5 362 aa9.66□□□□□ -0.86
USP28-203ENST00000537490 FAM49AQ9H0Q0 323 aaPredicted RBP9.66□□□□□ -0.86
USP28-203ENST00000537490 AZI2Q9H6S1 392 aa9.66□□□□□ -0.86
USP28-203ENST00000537490 BARHL2Q9NY43 387 aa9.66□□□□□ -0.86
USP28-203ENST00000537490 TRPC6Q9Y210 931 aa9.66□□□□□ -0.86
USP28-203ENST00000537490 COL4A4P53420 1690 aaPredicted RBP9.66□□□□□ -0.86
USP28-203ENST00000537490 MICAL3Q7RTP6 2002 aa9.66□□□□□ -0.86
USP28-203ENST00000537490 BRWD1Q9NSI6 2320 aa9.65□□□□□ -0.86
USP28-203ENST00000537490 DDX39AO00148 427 aaKnown RBP9.65□□□□□ -0.86
USP28-203ENST00000537490 CDC45O75419 566 aa9.65□□□□□ -0.86
USP28-203ENST00000537490 CCNE2O96020 404 aa9.65□□□□□ -0.86
USP28-203ENST00000537490 IL9P15248 144 aa9.65□□□□□ -0.86
USP28-203ENST00000537490 BMPR1AP36894 532 aa9.65□□□□□ -0.86
USP28-203ENST00000537490 SREBF1P36956 1147 aa9.65□□□□□ -0.86
USP28-203ENST00000537490 TMEM62Q0P6H9 643 aa9.65□□□□□ -0.86
USP28-203ENST00000537490 JAKMIP3Q5VZ66 844 aa9.65□□□□□ -0.86
USP28-203ENST00000537490 TSHZ1Q6ZSZ6 1077 aa9.65□□□□□ -0.86
USP28-203ENST00000537490 PLPPR4Q7Z2D5 763 aa9.65□□□□□ -0.86
USP28-203ENST00000537490 NEK9Q8TD19 979 aa9.65□□□□□ -0.86
USP28-203ENST00000537490 ZNF689Q96CS4 500 aaPredicted RBP9.65□□□□□ -0.86
USP28-203ENST00000537490 UIMC1Q96RL1 719 aa9.65□□□□□ -0.86
USP28-203ENST00000537490 C1QTNF1Q9BXJ1 281 aa9.65□□□□□ -0.86
USP28-203ENST00000537490 RC3H2Q9HBD1 1191 aaKnown RBP9.65□□□□□ -0.86
USP28-203ENST00000537490 NAP1L2Q9ULW6 460 aaPredicted RBP9.65□□□□□ -0.86
USP28-203ENST00000537490 PCDHA2Q9Y5H9 948 aa9.65□□□□□ -0.86
USP28-203ENST00000537490 IGKV6D-21A0A0A0MT36 114 aa9.64□□□□□ -0.87
USP28-203ENST00000537490 POTEB3A0JP26 581 aa9.64□□□□□ -0.87
USP28-203ENST00000537490 GRXCR2A6NFK2 248 aa9.64□□□□□ -0.87
USP28-203ENST00000537490 FAM86B1E9PN63 330 aa9.64□□□□□ -0.87
USP28-203ENST00000537490 C5orf67F2Z3F1 127 aa9.64□□□□□ -0.87
USP28-203ENST00000537490 H3BQ06 376 aaPredicted RBP9.64□□□□□ -0.87
USP28-203ENST00000537490 hCG_1984214I3L0E3 225 aa9.64□□□□□ -0.87
USP28-203ENST00000537490 GRM6O15303 877 aa9.64□□□□□ -0.87
USP28-203ENST00000537490 DHX15O43143 795 aaKnown RBP9.64□□□□□ -0.87
USP28-203ENST00000537490 DGKIO75912 1065 aa9.64□□□□□ -0.87
USP28-203ENST00000537490 RB1P06400 928 aa9.64□□□□□ -0.87
USP28-203ENST00000537490 FAM86B2P0C5J1 330 aa9.64□□□□□ -0.87
USP28-203ENST00000537490 CTNNB1P35222 781 aa9.64□□□□□ -0.87
USP28-203ENST00000537490 ZNF76P36508 570 aa9.64□□□□□ -0.87
USP28-203ENST00000537490 APOBRQ0VD83 1088 aa9.64□□□□□ -0.87
USP28-203ENST00000537490 AP3B2Q13367 1082 aa9.64□□□□□ -0.87
USP28-203ENST00000537490 KRT32Q14532 448 aa9.64□□□□□ -0.87
USP28-203ENST00000537490 PFKFB3Q16875 520 aaPredicted RBP9.64□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms