RNA–Protein interactions for RNA: ENST00000537408.1

CLSTN3-207, Transcript of calsyntenin 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLSTN3, Length 4,296 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-207ENST00000537408 USP17L4A6NCW7 530 aa11.83□□□□□ -0.52
CLSTN3-207ENST00000537408 SUN1O94901 812 aa11.83□□□□□ -0.52
CLSTN3-207ENST00000537408 GSTT1P30711 240 aa11.83□□□□□ -0.52
CLSTN3-207ENST00000537408 MAGEA10P43363 369 aaPredicted RBP11.83□□□□□ -0.52
CLSTN3-207ENST00000537408 NT5DC1Q5TFE4 455 aa11.83□□□□□ -0.52
CLSTN3-207ENST00000537408 RNF220Q5VTB9 566 aa11.83□□□□□ -0.52
CLSTN3-207ENST00000537408 USP17L1Q7RTZ2 530 aa11.83□□□□□ -0.52
CLSTN3-207ENST00000537408 ARL10Q8N8L6 244 aa11.83□□□□□ -0.52
CLSTN3-207ENST00000537408 SLC4A9Q96Q91 983 aa11.83□□□□□ -0.52
CLSTN3-207ENST00000537408 ZNF287Q9HBT7 754 aa11.83□□□□□ -0.52
CLSTN3-207ENST00000537408 SPATA7Q9P0W8 599 aa11.83□□□□□ -0.52
CLSTN3-207ENST00000537408 ZNF510Q9Y2H8 683 aa11.83□□□□□ -0.52
CLSTN3-207ENST00000537408 REXO2Q9Y3B8 237 aaKnown RBP11.83□□□□□ -0.52
CLSTN3-207ENST00000537408 PXDNLA1KZ92 1463 aa11.83□□□□□ -0.52
CLSTN3-207ENST00000537408 ABCC12Q96J65 1359 aa11.83□□□□□ -0.52
CLSTN3-207ENST00000537408 HNRNPCP07910 306 aaKnown RBP eCLIP11.83□□□□□ -0.52
CLSTN3-207ENST00000537408 KRT31Q15323 416 aa11.83□□□□□ -0.52
CLSTN3-207ENST00000537408 AOC3Q16853 763 aa11.83□□□□□ -0.52
CLSTN3-207ENST00000537408 SUPT20HL1Q3ZLR7 823 aa11.83□□□□□ -0.52
CLSTN3-207ENST00000537408 MCMDC2Q4G0Z9 681 aa11.83□□□□□ -0.52
CLSTN3-207ENST00000537408 SYT15Q9BQS2 421 aa11.83□□□□□ -0.52
CLSTN3-207ENST00000537408 ISCA1Q9BUE6 129 aa11.83□□□□□ -0.52
CLSTN3-207ENST00000537408 MAGEC2Q9UBF1 373 aaPredicted RBP11.83□□□□□ -0.52
CLSTN3-207ENST00000537408 MMEP08473 750 aa11.82□□□□□ -0.52
CLSTN3-207ENST00000537408 SERPINB4P48594 390 aa11.82□□□□□ -0.52
CLSTN3-207ENST00000537408 NCALDP61601 193 aa11.82□□□□□ -0.52
CLSTN3-207ENST00000537408 UBE4AQ14139 1066 aa11.82□□□□□ -0.52
CLSTN3-207ENST00000537408 KBTBD12Q3ZCT8 623 aa11.82□□□□□ -0.52
CLSTN3-207ENST00000537408 CDKAL1Q5VV42 579 aa11.82□□□□□ -0.52
CLSTN3-207ENST00000537408 CCDC42Q96M95 316 aa11.82□□□□□ -0.52
CLSTN3-207ENST00000537408 ADAM22Q9P0K1 906 aa11.82□□□□□ -0.52
CLSTN3-207ENST00000537408 SUN2Q9UH99 717 aa11.82□□□□□ -0.52
CLSTN3-207ENST00000537408 LIMA1Q9UHB6 759 aaKnown RBP11.82□□□□□ -0.52
CLSTN3-207ENST00000537408 FOXN1O15353 648 aa11.82□□□□□ -0.52
CLSTN3-207ENST00000537408 CHGBP05060 677 aa11.82□□□□□ -0.52
CLSTN3-207ENST00000537408 FAM153BP0C7A2 387 aa11.82□□□□□ -0.52
CLSTN3-207ENST00000537408 CBX3Q13185 183 aa11.82□□□□□ -0.52
CLSTN3-207ENST00000537408 FAM153CQ494X1 144 aa11.82□□□□□ -0.52
CLSTN3-207ENST00000537408 DBNDD2Q9BQY9 259 aa11.82□□□□□ -0.52
CLSTN3-207ENST00000537408 LUC7LQ9NQ29 371 aaKnown RBP11.82□□□□□ -0.52
CLSTN3-207ENST00000537408 FAM153AQ9UHL3 310 aa11.82□□□□□ -0.52
CLSTN3-207ENST00000537408 CTNND2Q9UQB3 1225 aa11.82□□□□□ -0.52
CLSTN3-207ENST00000537408 USP17L8P0C7I0 530 aa11.82□□□□□ -0.52
CLSTN3-207ENST00000537408 VCAM1P19320 739 aa11.82□□□□□ -0.52
CLSTN3-207ENST00000537408 TM4SF1P30408 202 aa11.82□□□□□ -0.52
CLSTN3-207ENST00000537408 ECE1P42892 770 aa11.82□□□□□ -0.52
CLSTN3-207ENST00000537408 CUL1Q13616 776 aa11.82□□□□□ -0.52
CLSTN3-207ENST00000537408 TNNI3KQ59H18 835 aa11.82□□□□□ -0.52
CLSTN3-207ENST00000537408 SFMBT2Q5VUG0 894 aa11.82□□□□□ -0.52
CLSTN3-207ENST00000537408 CENPKQ9BS16 269 aa11.82□□□□□ -0.52
CLSTN3-207ENST00000537408 PAG1Q9NWQ8 432 aa11.82□□□□□ -0.52
CLSTN3-207ENST00000537408 TMOD4Q9NZQ9 345 aa11.82□□□□□ -0.52
CLSTN3-207ENST00000537408 CSADQ9Y600 493 aa11.82□□□□□ -0.52
CLSTN3-207ENST00000537408 FPGT-TNNI3KV9GXZ4 949 aa11.82□□□□□ -0.52
CLSTN3-207ENST00000537408 LMNAP02545 664 aaKnown RBP11.81□□□□□ -0.52
CLSTN3-207ENST00000537408 MAEAQ7L5Y9 396 aa11.81□□□□□ -0.52
CLSTN3-207ENST00000537408 LPIN2Q92539 896 aa11.81□□□□□ -0.52
CLSTN3-207ENST00000537408 HIC2Q96JB3 615 aa11.81□□□□□ -0.52
CLSTN3-207ENST00000537408 PSMB7Q99436 277 aa11.81□□□□□ -0.52
CLSTN3-207ENST00000537408 UBAC1Q9BSL1 405 aa11.81□□□□□ -0.52
CLSTN3-207ENST00000537408 ALG1Q9BT22 464 aa11.81□□□□□ -0.52
CLSTN3-207ENST00000537408 GREM2Q9H772 168 aa11.81□□□□□ -0.52
CLSTN3-207ENST00000537408 RRAGCQ9HB90 399 aa11.81□□□□□ -0.52
CLSTN3-207ENST00000537408 CABP5Q9NP86 173 aa11.81□□□□□ -0.52
CLSTN3-207ENST00000537408 ESYT3A0FGR9 886 aa11.81□□□□□ -0.52
CLSTN3-207ENST00000537408 UBOX5O94941 541 aa11.81□□□□□ -0.52
CLSTN3-207ENST00000537408 MBD4O95243 580 aa11.81□□□□□ -0.52
CLSTN3-207ENST00000537408 FDPSP14324 419 aaKnown RBP11.81□□□□□ -0.52
CLSTN3-207ENST00000537408 CDC25AP30304 524 aa11.81□□□□□ -0.52
CLSTN3-207ENST00000537408 PABPC4Q13310 644 aaKnown RBP eCLIP11.81□□□□□ -0.521e-6■■■■■ 56.2
CLSTN3-207ENST00000537408 PPFIBP2Q8ND30 876 aa11.81□□□□□ -0.52
CLSTN3-207ENST00000537408 FAM81BQ96LP2 452 aa11.81□□□□□ -0.52
CLSTN3-207ENST00000537408 RBM12Q9NTZ6 932 aaKnown RBP11.81□□□□□ -0.52
CLSTN3-207ENST00000537408 KIF28PB7ZC32 967 aa11.81□□□□□ -0.52
CLSTN3-207ENST00000537408 ZNF213O14771 459 aa11.81□□□□□ -0.52
CLSTN3-207ENST00000537408 KCNA3P22001 575 aa11.81□□□□□ -0.52
CLSTN3-207ENST00000537408 CALB2P22676 271 aa11.81□□□□□ -0.52
CLSTN3-207ENST00000537408 RPL13P26373 211 aaKnown RBP11.81□□□□□ -0.52
CLSTN3-207ENST00000537408 IKQ13123 557 aaPredicted RBP11.81□□□□□ -0.52
CLSTN3-207ENST00000537408 SF3B3Q15393 1217 aaKnown RBP11.81□□□□□ -0.52
CLSTN3-207ENST00000537408 MFSD14BQ5SR56 506 aa11.81□□□□□ -0.52
CLSTN3-207ENST00000537408 DCAF15Q66K64 600 aa11.81□□□□□ -0.52
CLSTN3-207ENST00000537408 MYH15Q9Y2K3 1946 aa11.8□□□□□ -0.52
CLSTN3-207ENST00000537408 MAGEA13PA6NCF6 341 aa11.8□□□□□ -0.52
CLSTN3-207ENST00000537408 PEX5P50542 639 aa11.8□□□□□ -0.52
CLSTN3-207ENST00000537408 PDE6CP51160 858 aa11.8□□□□□ -0.52
CLSTN3-207ENST00000537408 RASSF7Q02833 373 aa11.8□□□□□ -0.52
CLSTN3-207ENST00000537408 CHRNDQ07001 517 aa11.8□□□□□ -0.52
CLSTN3-207ENST00000537408 TRIM22Q8IYM9 498 aa11.8□□□□□ -0.52
CLSTN3-207ENST00000537408 ZBTB8BQ8NAP8 495 aaPredicted RBP11.8□□□□□ -0.52
CLSTN3-207ENST00000537408 TEKT1Q969V4 418 aa11.8□□□□□ -0.52
CLSTN3-207ENST00000537408 RNPEPL1Q9HAU8 725 aa11.8□□□□□ -0.52
CLSTN3-207ENST00000537408 SEC31BQ9NQW1 1179 aa11.8□□□□□ -0.52
CLSTN3-207ENST00000537408 NUB1Q9Y5A7 615 aa11.8□□□□□ -0.52
CLSTN3-207ENST00000537408 KCNJ18B7U540 433 aa11.8□□□□□ -0.52
CLSTN3-207ENST00000537408 TRIM21P19474 475 aaKnown RBP11.8□□□□□ -0.52
CLSTN3-207ENST00000537408 HSD17B3P37058 310 aa11.8□□□□□ -0.52
CLSTN3-207ENST00000537408 SARSP49591 514 aaKnown RBP11.8□□□□□ -0.52
CLSTN3-207ENST00000537408 EIF3BP55884 814 aaKnown RBP11.8□□□□□ -0.52
CLSTN3-207ENST00000537408 MDM2Q00987 491 aaPredicted RBP11.8□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms