RNA–Protein interactions for RNA: ENST00000533018.1

PCF11-206, Transcript of PCF11, cleavage and polyadenylation factor subunit, humanhuman

TSL 3

Gene PCF11, Length 580 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11-206ENST00000533018 CPA1P15085 419 aa20.34■□□□□ 0.85
PCF11-206ENST00000533018 METAP2P50579 478 aaKnown RBP eCLIP20.34■□□□□ 0.853e-7■■■□□ 15.4
PCF11-206ENST00000533018 HTRA4P83105 476 aaPredicted RBP20.34■□□□□ 0.85
PCF11-206ENST00000533018 MKRN4PQ13434 485 aaPredicted RBP20.34■□□□□ 0.85
PCF11-206ENST00000533018 ZNF713Q8N859 430 aaPredicted RBP20.34■□□□□ 0.85
PCF11-206ENST00000533018 DNAJB3Q8WWF6 145 aa20.34■□□□□ 0.85
PCF11-206ENST00000533018 GLT8D2Q9H1C3 349 aa20.34■□□□□ 0.85
PCF11-206ENST00000533018 TMEM260Q9NX78 707 aa20.34■□□□□ 0.85
PCF11-206ENST00000533018 BARHL2Q9NY43 387 aa20.34■□□□□ 0.85
PCF11-206ENST00000533018 TRPC6Q9Y210 931 aa20.34■□□□□ 0.85
PCF11-206ENST00000533018 BRWD1Q9NSI6 2320 aa20.34■□□□□ 0.85
PCF11-206ENST00000533018 ARP10275 920 aa20.33■□□□□ 0.85
PCF11-206ENST00000533018 CDC27P30260 824 aa20.33■□□□□ 0.85
PCF11-206ENST00000533018 FUT2Q10981 343 aa20.33■□□□□ 0.85
PCF11-206ENST00000533018 CEP55Q53EZ4 464 aa20.33■□□□□ 0.85
PCF11-206ENST00000533018 TNPO1Q92973 898 aaKnown RBP20.33■□□□□ 0.85
PCF11-206ENST00000533018 FAM49AQ9H0Q0 323 aaPredicted RBP20.33■□□□□ 0.85
PCF11-206ENST00000533018 CCDC196A0A1B0GTZ2 297 aa20.32■□□□□ 0.84
PCF11-206ENST00000533018 RRN3P2A6NIE6 340 aa20.32■□□□□ 0.84
PCF11-206ENST00000533018 INSRRP14616 1297 aa20.32■□□□□ 0.84
PCF11-206ENST00000533018 ADD1P35611 737 aaKnown RBP20.32■□□□□ 0.84
PCF11-206ENST00000533018 ACTR2P61160 394 aa20.32■□□□□ 0.84
PCF11-206ENST00000533018 APOBRQ0VD83 1088 aa20.32■□□□□ 0.84
PCF11-206ENST00000533018 AP3B2Q13367 1082 aa20.32■□□□□ 0.84
PCF11-206ENST00000533018 JAKMIP3Q5VZ66 844 aa20.32■□□□□ 0.84
PCF11-206ENST00000533018 Q6ZUG5 572 aa20.32■□□□□ 0.84
PCF11-206ENST00000533018 SP7Q8TDD2 431 aaPredicted RBP20.32■□□□□ 0.84
PCF11-206ENST00000533018 ZBTB10Q96DT7 871 aa20.32■□□□□ 0.84
PCF11-206ENST00000533018 CCDC136Q96JN2 1154 aa20.32■□□□□ 0.84
PCF11-206ENST00000533018 JAKMIP1Q96N16 626 aaKnown RBP20.32■□□□□ 0.84
PCF11-206ENST00000533018 NFASCO94856 1347 aa20.31■□□□□ 0.84
PCF11-206ENST00000533018 NLRC5Q86WI3 1866 aa20.31■□□□□ 0.84
PCF11-206ENST00000533018 DDX39AO00148 427 aaKnown RBP20.31■□□□□ 0.84
PCF11-206ENST00000533018 STAT5BP51692 787 aa20.31■□□□□ 0.84
PCF11-206ENST00000533018 LPIN1Q14693 890 aa20.31■□□□□ 0.84
PCF11-206ENST00000533018 EPC2Q52LR7 807 aa20.31■□□□□ 0.84
PCF11-206ENST00000533018 MARCH8Q5T0T0 291 aa20.31■□□□□ 0.84
PCF11-206ENST00000533018 RPAINQ86UA6 219 aa20.31■□□□□ 0.84
PCF11-206ENST00000533018 TEX2Q8IWB9 1127 aa20.31■□□□□ 0.84
PCF11-206ENST00000533018 BRF1Q92994 677 aa20.31■□□□□ 0.84
PCF11-206ENST00000533018 PCYT2Q99447 389 aa20.31■□□□□ 0.84
PCF11-206ENST00000533018 AGO4Q9HCK5 861 aaKnown RBP20.31■□□□□ 0.84
PCF11-206ENST00000533018 FAM217BQ9NTX9 383 aaPredicted RBP20.31■□□□□ 0.84
PCF11-206ENST00000533018 CDY2AQ9Y6F7 541 aa20.31■□□□□ 0.84
PCF11-206ENST00000533018 LOXHD1Q8IVV2 1947 aa20.3■□□□□ 0.84
PCF11-206ENST00000533018 MBLAC1A4D2B0 266 aaPredicted RBP20.3■□□□□ 0.84
PCF11-206ENST00000533018 M0QZ92 97 aa20.3■□□□□ 0.84
PCF11-206ENST00000533018 RCAN1P53805 252 aa20.3■□□□□ 0.84
PCF11-206ENST00000533018 MGAT3Q09327 533 aa20.3■□□□□ 0.84
PCF11-206ENST00000533018 ITGB3BPQ13352 177 aaPredicted RBP20.3■□□□□ 0.84
PCF11-206ENST00000533018 PFKFB3Q16875 520 aaPredicted RBP20.3■□□□□ 0.84
PCF11-206ENST00000533018 IER5Q5VY09 327 aa20.3■□□□□ 0.84
PCF11-206ENST00000533018 BLOC1S2Q6QNY1 142 aa20.3■□□□□ 0.84
PCF11-206ENST00000533018 IL17RAQ96F46 866 aa20.3■□□□□ 0.84
PCF11-206ENST00000533018 SAMD11Q96NU1 681 aa20.3■□□□□ 0.84
PCF11-206ENST00000533018 MEIS1O00470 390 aa20.29■□□□□ 0.84
PCF11-206ENST00000533018 BACH1O14867 736 aa20.29■□□□□ 0.84
PCF11-206ENST00000533018 SCG2P13521 617 aa20.29■□□□□ 0.84
PCF11-206ENST00000533018 SREBF1P36956 1147 aa20.29■□□□□ 0.84
PCF11-206ENST00000533018 MRPS6P82932 125 aaKnown RBP20.29■□□□□ 0.84
PCF11-206ENST00000533018 TMEM62Q0P6H9 643 aa20.29■□□□□ 0.84
PCF11-206ENST00000533018 GPM6BQ13491 265 aa20.29■□□□□ 0.84
PCF11-206ENST00000533018 PLCB4Q15147 1175 aa20.29■□□□□ 0.84
PCF11-206ENST00000533018 PTPROQ16827 1216 aa20.29■□□□□ 0.84
PCF11-206ENST00000533018 FBXO47Q5MNV8 452 aa20.29■□□□□ 0.84
PCF11-206ENST00000533018 PLPPR4Q7Z2D5 763 aa20.29■□□□□ 0.84
PCF11-206ENST00000533018 TMEM192Q8IY95 271 aa20.29■□□□□ 0.84
PCF11-206ENST00000533018 FIBCD1Q8N539 461 aa20.29■□□□□ 0.84
PCF11-206ENST00000533018 UIMC1Q96RL1 719 aa20.29■□□□□ 0.84
PCF11-206ENST00000533018 SNX14Q9Y5W7 946 aa20.29■□□□□ 0.84
PCF11-206ENST00000533018 POTEB3A0JP26 581 aa20.28■□□□□ 0.84
PCF11-206ENST00000533018 RPLP2P05387 115 aaKnown RBP20.28■□□□□ 0.84
PCF11-206ENST00000533018 HSPA4P34932 840 aa20.28■□□□□ 0.84
PCF11-206ENST00000533018 CLK2P49760 499 aaKnown RBP20.28■□□□□ 0.84
PCF11-206ENST00000533018 AKAP17AQ02040 695 aaKnown RBP20.28■□□□□ 0.84
PCF11-206ENST00000533018 POTEBQ6S5H4 581 aa20.28■□□□□ 0.84
PCF11-206ENST00000533018 TSHZ1Q6ZSZ6 1077 aa20.28■□□□□ 0.84
PCF11-206ENST00000533018 PLA2G4DQ86XP0 818 aa20.28■□□□□ 0.84
PCF11-206ENST00000533018 TRAPPC12Q8WVT3 735 aa20.28■□□□□ 0.84
PCF11-206ENST00000533018 C6orf50Q9HD87 102 aa20.28■□□□□ 0.84
PCF11-206ENST00000533018 ENPP3O14638 875 aa20.27■□□□□ 0.84
PCF11-206ENST00000533018 CD52P31358 61 aa20.27■□□□□ 0.84
PCF11-206ENST00000533018 FAM160B1Q5W0V3 765 aa20.27■□□□□ 0.84
PCF11-206ENST00000533018 CCDC12Q8WUD4 166 aaPredicted RBP20.27■□□□□ 0.84
PCF11-206ENST00000533018 MRPL38Q96DV4 380 aaKnown RBP20.27■□□□□ 0.84
PCF11-206ENST00000533018 PCDHA2Q9Y5H9 948 aa20.27■□□□□ 0.84
PCF11-206ENST00000533018 RALGAPA2Q2PPJ7 1873 aa20.26■□□□□ 0.83
PCF11-206ENST00000533018 FAM86B1E9PN63 330 aa20.26■□□□□ 0.83
PCF11-206ENST00000533018 H3BNC9 293 aa20.26■□□□□ 0.83
PCF11-206ENST00000533018 PPFIA3O75145 1194 aa20.26■□□□□ 0.83
PCF11-206ENST00000533018 FAM86B2P0C5J1 330 aa20.26■□□□□ 0.83
PCF11-206ENST00000533018 CTNNB1P35222 781 aa20.26■□□□□ 0.83
PCF11-206ENST00000533018 SLC26A2P50443 739 aa20.26■□□□□ 0.83
PCF11-206ENST00000533018 EP400NLQ6ZTU2 488 aa20.26■□□□□ 0.83
PCF11-206ENST00000533018 NIPA1Q7RTP0 329 aa20.26■□□□□ 0.83
PCF11-206ENST00000533018 KCNB2Q92953 911 aa20.26■□□□□ 0.83
PCF11-206ENST00000533018 PHKBQ93100 1093 aa20.26■□□□□ 0.83
PCF11-206ENST00000533018 UBE2ZQ9H832 354 aaPredicted RBP20.26■□□□□ 0.83
PCF11-206ENST00000533018 TCEAL9Q9UHQ7 104 aa20.26■□□□□ 0.83
PCF11-206ENST00000533018 TRPV2Q9Y5S1 764 aa20.26■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 101.9 ms