RNA–Protein interactions for RNA: ENST00000532339.1

CD44-235, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 589 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-235ENST00000532339 PRR31Q5SQ13 230 aa5.87□□□□□ -1.47
CD44-235ENST00000532339 CYP4F22Q6NT55 531 aa5.87□□□□□ -1.47
CD44-235ENST00000532339 BORAQ6PGQ7 559 aa5.87□□□□□ -1.47
CD44-235ENST00000532339 TRIM48Q8IWZ4 208 aa5.87□□□□□ -1.47
CD44-235ENST00000532339 THEMISQ8N1K5 641 aaPredicted RBP5.87□□□□□ -1.47
CD44-235ENST00000532339 CLIC6Q96NY7 704 aa5.87□□□□□ -1.47
CD44-235ENST00000532339 PHF20Q9BVI0 1012 aa5.87□□□□□ -1.47
CD44-235ENST00000532339 BLMP54132 1417 aaPredicted RBP5.87□□□□□ -1.47
CD44-235ENST00000532339 UTRNP46939 3433 aa5.86□□□□□ -1.47
CD44-235ENST00000532339 IQGAP1P46940 1657 aa5.86□□□□□ -1.47
CD44-235ENST00000532339 COL16A1Q07092 1604 aaPredicted RBP5.86□□□□□ -1.47
CD44-235ENST00000532339 MLH3Q9UHC1 1453 aa5.86□□□□□ -1.47
CD44-235ENST00000532339 PLCH2O75038 1416 aa5.86□□□□□ -1.47
CD44-235ENST00000532339 MROH6A6NGR9 719 aa5.86□□□□□ -1.47
CD44-235ENST00000532339 DDX3XO00571 662 aaKnown RBP eCLIP5.86□□□□□ -1.47
CD44-235ENST00000532339 CYP7B1O75881 506 aa5.86□□□□□ -1.47
CD44-235ENST00000532339 FGFR1P11362 822 aa5.86□□□□□ -1.47
CD44-235ENST00000532339 PRELPP51888 382 aa5.86□□□□□ -1.47
CD44-235ENST00000532339 ADAM9Q13443 819 aa5.86□□□□□ -1.47
CD44-235ENST00000532339 PRAMEF18Q5VWM3 479 aa5.86□□□□□ -1.47
CD44-235ENST00000532339 MCTP2Q6DN12 878 aa5.86□□□□□ -1.47
CD44-235ENST00000532339 TEPPQ6URK8 271 aa5.86□□□□□ -1.47
CD44-235ENST00000532339 LGI4Q8N135 537 aa5.86□□□□□ -1.47
CD44-235ENST00000532339 LRRC47Q8N1G4 583 aaKnown RBP5.86□□□□□ -1.47
CD44-235ENST00000532339 AFAP1Q8N556 730 aa5.86□□□□□ -1.47
CD44-235ENST00000532339 TXNDC5Q8NBS9 432 aaKnown RBP5.86□□□□□ -1.47
CD44-235ENST00000532339 DCAF4Q8WV16 495 aa5.86□□□□□ -1.47
CD44-235ENST00000532339 BORCS6Q96GS4 357 aa5.86□□□□□ -1.47
CD44-235ENST00000532339 WRNIP1Q96S55 665 aa5.86□□□□□ -1.47
CD44-235ENST00000532339 TMEM209Q96SK2 561 aa5.86□□□□□ -1.47
CD44-235ENST00000532339 ZFYVE21Q9BQ24 234 aa5.86□□□□□ -1.47
CD44-235ENST00000532339 TRIM55Q9BYV6 548 aa5.86□□□□□ -1.47
CD44-235ENST00000532339 CDIP1Q9H305 208 aa5.86□□□□□ -1.47
CD44-235ENST00000532339 ABCC1P33527 1531 aa5.85□□□□□ -1.47
CD44-235ENST00000532339 TRAV20A0A0B4J274 112 aa5.85□□□□□ -1.47
CD44-235ENST00000532339 PLEKHD1A6NEE1 506 aa5.85□□□□□ -1.47
CD44-235ENST00000532339 PRODHO43272 600 aa5.85□□□□□ -1.47
CD44-235ENST00000532339 MSCO60682 206 aa5.85□□□□□ -1.47
CD44-235ENST00000532339 PABPC1P11940 636 aaKnown RBP5.85□□□□□ -1.47
CD44-235ENST00000532339 NFKB2Q00653 900 aa5.85□□□□□ -1.47
CD44-235ENST00000532339 KIZQ2M2Z5 673 aa5.85□□□□□ -1.47
CD44-235ENST00000532339 NSMFQ6X4W1 530 aa5.85□□□□□ -1.47
CD44-235ENST00000532339 DEFB132Q7Z7B7 95 aa5.85□□□□□ -1.47
CD44-235ENST00000532339 ZNF669Q96BR6 464 aaPredicted RBP5.85□□□□□ -1.47
CD44-235ENST00000532339 LCORQ96JN0 433 aaPredicted RBP5.85□□□□□ -1.47
CD44-235ENST00000532339 JAM3Q9BX67 310 aa5.85□□□□□ -1.47
CD44-235ENST00000532339 SLC6A20Q9NP91 592 aa5.85□□□□□ -1.47
CD44-235ENST00000532339 ARHGEF4Q9NR80 690 aa5.85□□□□□ -1.47
CD44-235ENST00000532339 HSPBP1Q9NZL4 362 aa5.85□□□□□ -1.47
CD44-235ENST00000532339 ASH2LQ9UBL3 628 aa5.85□□□□□ -1.47
CD44-235ENST00000532339 ABCA6Q8N139 1617 aa5.85□□□□□ -1.47
CD44-235ENST00000532339 C9orf118A6NHY6 69 aa5.84□□□□□ -1.47
CD44-235ENST00000532339 STK10O94804 968 aaKnown RBP5.84□□□□□ -1.47
CD44-235ENST00000532339 PLATP00750 562 aa5.84□□□□□ -1.47
CD44-235ENST00000532339 LRG1P02750 347 aa5.84□□□□□ -1.47
CD44-235ENST00000532339 ITGB3P05106 788 aa5.84□□□□□ -1.47
CD44-235ENST00000532339 ZNF28P17035 718 aa5.84□□□□□ -1.47
CD44-235ENST00000532339 GRK2P25098 689 aa5.84□□□□□ -1.47
CD44-235ENST00000532339 GRK3P35626 688 aa5.84□□□□□ -1.47
CD44-235ENST00000532339 IFRD2Q12894 506 aaPredicted RBP5.84□□□□□ -1.47
CD44-235ENST00000532339 ZNF827Q17R98 1081 aa5.84□□□□□ -1.47
CD44-235ENST00000532339 EFCAB2Q5VUJ9 269 aa5.84□□□□□ -1.47
CD44-235ENST00000532339 LBX2Q6XYB7 198 aa5.84□□□□□ -1.47
CD44-235ENST00000532339 DPH6Q7L8W6 267 aa5.84□□□□□ -1.47
CD44-235ENST00000532339 CKAP2LQ8IYA6 745 aa5.84□□□□□ -1.47
CD44-235ENST00000532339 TTLL11Q8NHH1 800 aa5.84□□□□□ -1.47
CD44-235ENST00000532339 PIP4K2CQ8TBX8 421 aa5.84□□□□□ -1.47
CD44-235ENST00000532339 L2HGDHQ9H9P8 463 aa5.84□□□□□ -1.47
CD44-235ENST00000532339 NUB1Q9Y5A7 615 aa5.84□□□□□ -1.47
CD44-235ENST00000532339 SHPRHQ149N8 1683 aa5.84□□□□□ -1.47
CD44-235ENST00000532339 XIRP1Q702N8 1843 aaKnown RBP5.83□□□□□ -1.48
CD44-235ENST00000532339 TMEM94Q12767 1356 aa5.83□□□□□ -1.48
CD44-235ENST00000532339 U2SURPO15042 1029 aaKnown RBP5.83□□□□□ -1.48
CD44-235ENST00000532339 CYP1A1P04798 512 aaPredicted RBP5.83□□□□□ -1.48
CD44-235ENST00000532339 KRTAP10-2P60368 255 aa5.83□□□□□ -1.48
CD44-235ENST00000532339 ZC3H6P61129 1189 aaKnown RBP5.83□□□□□ -1.48
CD44-235ENST00000532339 SPIRE1Q08AE8 756 aa5.83□□□□□ -1.48
CD44-235ENST00000532339 STYK1Q6J9G0 422 aa5.83□□□□□ -1.48
CD44-235ENST00000532339 HHIPL2Q6UWX4 724 aa5.83□□□□□ -1.48
CD44-235ENST00000532339 OTOP3Q7RTS5 596 aa5.83□□□□□ -1.48
CD44-235ENST00000532339 IFNL3Q8IZI9 196 aa5.83□□□□□ -1.48
CD44-235ENST00000532339 OSBP2Q969R2 916 aa5.83□□□□□ -1.48
CD44-235ENST00000532339 ZSWIM3Q96MP5 696 aa5.83□□□□□ -1.48
CD44-235ENST00000532339 PPARGC1AQ9UBK2 798 aaKnown RBP5.83□□□□□ -1.48
CD44-235ENST00000532339 INVSQ9Y283 1065 aa5.83□□□□□ -1.48
CD44-235ENST00000532339 SLC27A2O14975 620 aa5.82□□□□□ -1.48
CD44-235ENST00000532339 IL13P35225 146 aa5.82□□□□□ -1.48
CD44-235ENST00000532339 GPR85P60893 370 aa5.82□□□□□ -1.48
CD44-235ENST00000532339 NTRK3Q16288 839 aa5.82□□□□□ -1.48
CD44-235ENST00000532339 TBC1D10BQ4KMP7 808 aaPredicted RBP5.82□□□□□ -1.48
CD44-235ENST00000532339 KCNT2Q6UVM3 1135 aa5.82□□□□□ -1.48
CD44-235ENST00000532339 PLEKHH3Q7Z736 793 aa5.82□□□□□ -1.48
CD44-235ENST00000532339 PUM2Q8TB72 1066 aaKnown RBP eCLIP5.82□□□□□ -1.48
CD44-235ENST00000532339 YTHDC1Q96MU7 727 aaKnown RBP5.82□□□□□ -1.48
CD44-235ENST00000532339 RBM15Q96T37 977 aaKnown RBP eCLIP5.82□□□□□ -1.48
CD44-235ENST00000532339 TMEM168Q9H0V1 697 aa5.82□□□□□ -1.48
CD44-235ENST00000532339 CROTQ9UKG9 612 aa5.82□□□□□ -1.48
CD44-235ENST00000532339 FAM135AQ9P2D6 1515 aa5.82□□□□□ -1.48
CD44-235ENST00000532339 CLTCQ00610 1675 aaKnown RBP5.82□□□□□ -1.48
CD44-235ENST00000532339 TNRQ92752 1358 aa5.81□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms