RNA–Protein interactions for RNA: ENST00000527797.6

VPS28-208, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,609 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-208ENST00000527797 BCAS3Q9H6U6 928 aa23.43■■□□□ 1.34
VPS28-208ENST00000527797 CREBZFQ9NS37 354 aa23.43■■□□□ 1.34
VPS28-208ENST00000527797 SLC5A4Q9NY91 659 aa23.43■■□□□ 1.34
VPS28-208ENST00000527797 LYPLA2O95372 231 aa23.42■■□□□ 1.34
VPS28-208ENST00000527797 ALDH1A1P00352 501 aa23.42■■□□□ 1.34
VPS28-208ENST00000527797 ACTR2P61160 394 aa23.42■■□□□ 1.34
VPS28-208ENST00000527797 CRHR2Q13324 411 aa23.42■■□□□ 1.34
VPS28-208ENST00000527797 CYFIP1Q7L576 1253 aa23.42■■□□□ 1.34
VPS28-208ENST00000527797 SMYD4Q8IYR2 804 aaPredicted RBP23.42■■□□□ 1.34
VPS28-208ENST00000527797 DNAJC19Q96DA6 116 aa23.42■■□□□ 1.34
VPS28-208ENST00000527797 RASSF10A6NK89 507 aa23.41■■□□□ 1.34
VPS28-208ENST00000527797 PPP1R3GB7ZBB8 358 aa23.41■■□□□ 1.34
VPS28-208ENST00000527797 CA12O43570 354 aa23.41■■□□□ 1.34
VPS28-208ENST00000527797 UBA1P22314 1058 aaKnown RBP23.41■■□□□ 1.34
VPS28-208ENST00000527797 APLP1P51693 650 aa23.41■■□□□ 1.34
VPS28-208ENST00000527797 TPM4P67936 248 aa23.41■■□□□ 1.34
VPS28-208ENST00000527797 MYL5Q02045 173 aa23.41■■□□□ 1.34
VPS28-208ENST00000527797 MIS18BP1Q6P0N0 1132 aa23.41■■□□□ 1.34
VPS28-208ENST00000527797 C4orf19Q8IY42 314 aa23.41■■□□□ 1.34
VPS28-208ENST00000527797 GDAQ9Y2T3 454 aa23.41■■□□□ 1.34
VPS28-208ENST00000527797 SORBS3O60504 671 aa23.41■■□□□ 1.34
VPS28-208ENST00000527797 DKC1O60832 514 aaKnown RBP eCLIP23.41■■□□□ 1.34
VPS28-208ENST00000527797 CD44P16070 742 aaKnown RBP23.41■■□□□ 1.34
VPS28-208ENST00000527797 SP4Q02446 784 aa23.41■■□□□ 1.34
VPS28-208ENST00000527797 ARSHQ5FYA8 562 aa23.41■■□□□ 1.34
VPS28-208ENST00000527797 FBXO16Q8IX29 292 aaPredicted RBP23.41■■□□□ 1.34
VPS28-208ENST00000527797 CCDC65Q8IXS2 484 aa23.41■■□□□ 1.34
VPS28-208ENST00000527797 CAPNS2Q96L46 248 aa23.41■■□□□ 1.34
VPS28-208ENST00000527797 PANK4Q9NVE7 773 aa23.41■■□□□ 1.34
VPS28-208ENST00000527797 ZBTB39O15060 712 aa23.4■■□□□ 1.34
VPS28-208ENST00000527797 PLCB2Q00722 1185 aa23.4■■□□□ 1.34
VPS28-208ENST00000527797 PSMD2Q13200 908 aa23.4■■□□□ 1.34
VPS28-208ENST00000527797 STIM1Q13586 685 aa23.4■■□□□ 1.34
VPS28-208ENST00000527797 MAMDC4Q6UXC1 1216 aa23.4■■□□□ 1.34
VPS28-208ENST00000527797 REM2Q8IYK8 340 aaPredicted RBP23.4■■□□□ 1.34
VPS28-208ENST00000527797 ENOX1Q8TC92 643 aaKnown RBP23.4■■□□□ 1.34
VPS28-208ENST00000527797 DDX41Q9UJV9 622 aaKnown RBP23.4■■□□□ 1.34
VPS28-208ENST00000527797 NPHP3-ACAD11A0A0J9YXS1 232 aa23.39■■□□□ 1.33
VPS28-208ENST00000527797 GIT2Q14161 759 aa23.39■■□□□ 1.33
VPS28-208ENST00000527797 NCAPHQ15003 741 aa23.39■■□□□ 1.33
VPS28-208ENST00000527797 UGCGQ16739 394 aa23.39■■□□□ 1.33
VPS28-208ENST00000527797 LY6KQ17RY6 165 aa23.39■■□□□ 1.33
VPS28-208ENST00000527797 MORN1Q5T089 497 aa23.39■■□□□ 1.33
VPS28-208ENST00000527797 KLHL10Q6JEL2 608 aa23.39■■□□□ 1.33
VPS28-208ENST00000527797 RINT1Q6NUQ1 792 aa23.39■■□□□ 1.33
VPS28-208ENST00000527797 ABHD15Q6UXT9 468 aa23.39■■□□□ 1.33
VPS28-208ENST00000527797 ATP6V0A1Q93050 837 aa23.39■■□□□ 1.33
VPS28-208ENST00000527797 MAML3Q96JK9 1138 aa23.39■■□□□ 1.33
VPS28-208ENST00000527797 KCND2Q9NZV8 630 aa23.39■■□□□ 1.33
VPS28-208ENST00000527797 GABBR1Q9UBS5 961 aa23.39■■□□□ 1.33
VPS28-208ENST00000527797 DBR1Q9UK59 544 aaKnown RBP23.39■■□□□ 1.33
VPS28-208ENST00000527797 PLXNB2O15031 1838 aa23.38■■□□□ 1.33
VPS28-208ENST00000527797 ARHGEF35A5YM69 484 aa23.38■■□□□ 1.33
VPS28-208ENST00000527797 FARP2O94887 1054 aaPredicted RBP23.38■■□□□ 1.33
VPS28-208ENST00000527797 GGPS1O95749 300 aa23.38■■□□□ 1.33
VPS28-208ENST00000527797 SUPT20HL2P0C7V6 817 aa23.38■■□□□ 1.33
VPS28-208ENST00000527797 PPP1R2P41236 205 aa23.38■■□□□ 1.33
VPS28-208ENST00000527797 PRCPP42785 496 aa23.38■■□□□ 1.33
VPS28-208ENST00000527797 COASYQ13057 564 aa23.38■■□□□ 1.33
VPS28-208ENST00000527797 TTLL4Q14679 1199 aa23.38■■□□□ 1.33
VPS28-208ENST00000527797 SWSAP1Q6NVH7 229 aa23.38■■□□□ 1.33
VPS28-208ENST00000527797 METTL7BQ6UX53 244 aa23.38■■□□□ 1.33
VPS28-208ENST00000527797 ADSSL1Q8N142 457 aa23.38■■□□□ 1.33
VPS28-208ENST00000527797 SCFD2Q8WU76 684 aa23.38■■□□□ 1.33
VPS28-208ENST00000527797 RUSC1Q9BVN2 902 aa23.38■■□□□ 1.33
VPS28-208ENST00000527797 MLXIPQ9HAP2 919 aa23.38■■□□□ 1.33
VPS28-208ENST00000527797 VTA1Q9NP79 307 aa23.38■■□□□ 1.33
VPS28-208ENST00000527797 AOC2O75106 756 aa23.37■■□□□ 1.33
VPS28-208ENST00000527797 ATG7O95352 703 aa23.37■■□□□ 1.33
VPS28-208ENST00000527797 ARIH2O95376 493 aa23.37■■□□□ 1.33
VPS28-208ENST00000527797 YWHABP31946 246 aaKnown RBP23.37■■□□□ 1.33
VPS28-208ENST00000527797 EHHADHQ08426 723 aa23.37■■□□□ 1.33
VPS28-208ENST00000527797 RAD51AP2Q09MP3 1159 aa23.37■■□□□ 1.33
VPS28-208ENST00000527797 STK4Q13043 487 aa23.37■■□□□ 1.33
VPS28-208ENST00000527797 MAP2K5Q13163 448 aa23.37■■□□□ 1.33
VPS28-208ENST00000527797 C1orf186Q6ZWK4 172 aa23.37■■□□□ 1.33
VPS28-208ENST00000527797 CDKN2AIPQ9NXV6 580 aaPredicted RBP23.37■■□□□ 1.33
VPS28-208ENST00000527797 ECM2O94769 699 aaPredicted RBP23.37■■□□□ 1.33
VPS28-208ENST00000527797 TXNP10599 105 aaKnown RBP23.37■■□□□ 1.33
VPS28-208ENST00000527797 CACNB1Q02641 598 aaPredicted RBP23.37■■□□□ 1.33
VPS28-208ENST00000527797 PAK1Q13153 545 aa23.37■■□□□ 1.33
VPS28-208ENST00000527797 COBLL1Q53SF7 1204 aa23.37■■□□□ 1.33
VPS28-208ENST00000527797 CCDC62Q6P9F0 684 aa23.37■■□□□ 1.33
VPS28-208ENST00000527797 MSL3Q8N5Y2 521 aaKnown RBP23.37■■□□□ 1.33
VPS28-208ENST00000527797 NPLOC4Q8TAT6 608 aa23.37■■□□□ 1.33
VPS28-208ENST00000527797 REEP2Q9BRK0 252 aa23.37■■□□□ 1.33
VPS28-208ENST00000527797 SLC39A2Q9NP94 309 aa23.37■■□□□ 1.33
VPS28-208ENST00000527797 CTNND2Q9UQB3 1225 aa23.37■■□□□ 1.33
VPS28-208ENST00000527797 MAPK8IP1Q9UQF2 711 aa23.37■■□□□ 1.33
VPS28-208ENST00000527797 TELO2Q9Y4R8 837 aa23.37■■□□□ 1.33
VPS28-208ENST00000527797 LRRC37A2A6NM11 1700 aa23.37■■□□□ 1.33
VPS28-208ENST00000527797 SYNGAP1Q96PV0 1343 aa23.36■■□□□ 1.33
VPS28-208ENST00000527797 ZNFX1Q9P2E3 1918 aaKnown RBP23.36■■□□□ 1.33
VPS28-208ENST00000527797 FRMD3A2A2Y4 597 aa23.36■■□□□ 1.33
VPS28-208ENST00000527797 BACH1O14867 736 aa23.36■■□□□ 1.33
VPS28-208ENST00000527797 HERC4Q5GLZ8 1057 aaPredicted RBP23.36■■□□□ 1.33
VPS28-208ENST00000527797 CELF3Q5SZQ8 465 aaKnown RBP23.36■■□□□ 1.33
VPS28-208ENST00000527797 TRMT44Q8IYL2 757 aaKnown RBP23.36■■□□□ 1.33
VPS28-208ENST00000527797 CCDC43Q96MW1 224 aaKnown RBP23.36■■□□□ 1.33
VPS28-208ENST00000527797 TINF2Q9BSI4 451 aa23.36■■□□□ 1.33
Retrieved 100 of 20,778 RNA–protein pairs in 44.2 ms