RNA–Protein interactions for RNA: ENST00000527326.1

CD44-225, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 718 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-225ENST00000527326 EXOC3L1Q86VI1 746 aa6.35□□□□□ -1.39
CD44-225ENST00000527326 FMR1NBQ8N0W7 255 aaPredicted RBP6.35□□□□□ -1.39
CD44-225ENST00000527326 STK11IPQ8N1F8 1099 aa6.35□□□□□ -1.39
CD44-225ENST00000527326 DEPDC4Q8N2C3 294 aa6.35□□□□□ -1.39
CD44-225ENST00000527326 PDILTQ8N807 584 aa6.35□□□□□ -1.39
CD44-225ENST00000527326 TRIML1Q8N9V2 468 aa6.35□□□□□ -1.39
CD44-225ENST00000527326 ZNF280CQ8ND82 737 aa6.35□□□□□ -1.39
CD44-225ENST00000527326 LINS1Q8NG48 757 aa6.35□□□□□ -1.39
CD44-225ENST00000527326 DEPTORQ8TB45 409 aa6.35□□□□□ -1.39
CD44-225ENST00000527326 RHBDD1Q8TEB9 315 aa6.35□□□□□ -1.39
CD44-225ENST00000527326 SH3TC2Q8TF17 1288 aa6.35□□□□□ -1.39
CD44-225ENST00000527326 ATP6V0A1Q93050 837 aa6.35□□□□□ -1.39
CD44-225ENST00000527326 C8orf76Q96K31 380 aa6.35□□□□□ -1.39
CD44-225ENST00000527326 SNX27Q96L92 541 aa6.35□□□□□ -1.39
CD44-225ENST00000527326 OLFM3Q96PB7 478 aa6.35□□□□□ -1.39
CD44-225ENST00000527326 PLEKHF1Q96S99 279 aa6.35□□□□□ -1.39
CD44-225ENST00000527326 SEC62Q99442 399 aaKnown RBP6.35□□□□□ -1.39
CD44-225ENST00000527326 SYT15Q9BQS2 421 aa6.35□□□□□ -1.39
CD44-225ENST00000527326 DESI2Q9BSY9 194 aa6.35□□□□□ -1.39
CD44-225ENST00000527326 OSBPL10Q9BXB5 764 aa6.35□□□□□ -1.39
CD44-225ENST00000527326 LSG1Q9H089 658 aaKnown RBP6.35□□□□□ -1.39
CD44-225ENST00000527326 TAF1DQ9H5J8 278 aaPredicted RBP6.35□□□□□ -1.39
CD44-225ENST00000527326 ATP8A2Q9NTI2 1148 aa6.35□□□□□ -1.39
CD44-225ENST00000527326 FANCLQ9NW38 375 aa6.35□□□□□ -1.39
CD44-225ENST00000527326 RHBDL2Q9NX52 303 aa6.35□□□□□ -1.39
CD44-225ENST00000527326 GNEQ9Y223 722 aaKnown RBP6.35□□□□□ -1.39
CD44-225ENST00000527326 N6AMT1Q9Y5N5 214 aa6.35□□□□□ -1.39
CD44-225ENST00000527326 MYO3AQ8NEV4 1616 aa6.35□□□□□ -1.39
CD44-225ENST00000527326 UNC13BO14795 1591 aa6.35□□□□□ -1.39
CD44-225ENST00000527326 ARHGAP5Q13017 1502 aa6.35□□□□□ -1.39
CD44-225ENST00000527326 ERVK-7P63135 1459 aa6.34□□□□□ -1.39
CD44-225ENST00000527326 ZFYVE9O95405 1425 aa6.34□□□□□ -1.39
CD44-225ENST00000527326 NSD3Q9BZ95 1437 aa6.34□□□□□ -1.39
CD44-225ENST00000527326 PNPLA6Q8IY17 1366 aa6.34□□□□□ -1.39
CD44-225ENST00000527326 JCADQ9P266 1359 aa6.34□□□□□ -1.39
CD44-225ENST00000527326 SBNO2Q9Y2G9 1366 aa6.34□□□□□ -1.39
CD44-225ENST00000527326 SPHKAPQ2M3C7 1700 aa6.34□□□□□ -1.39
CD44-225ENST00000527326 ANO9A1A5B4 782 aa6.34□□□□□ -1.39
CD44-225ENST00000527326 TRIM43BA6NCK2 446 aa6.34□□□□□ -1.39
CD44-225ENST00000527326 USP17L5A8MUK1 530 aa6.34□□□□□ -1.39
CD44-225ENST00000527326 BTBD19C9JJ37 291 aa6.34□□□□□ -1.39
CD44-225ENST00000527326 LSM1O15116 133 aaKnown RBP6.34□□□□□ -1.39
CD44-225ENST00000527326 ASAP2O43150 1006 aa6.34□□□□□ -1.39
CD44-225ENST00000527326 OIP5O43482 229 aa6.34□□□□□ -1.39
CD44-225ENST00000527326 MGEA5O60502 916 aa6.34□□□□□ -1.39
CD44-225ENST00000527326 VAMP4O75379 141 aa6.34□□□□□ -1.39
CD44-225ENST00000527326 MAP4K4O95819 1239 aaPredicted RBP6.34□□□□□ -1.39
CD44-225ENST00000527326 IGHA1P01876 353 aa6.34□□□□□ -1.39
CD44-225ENST00000527326 SKIP12755 728 aa6.34□□□□□ -1.39
CD44-225ENST00000527326 SEC24CP53992 1094 aa6.34□□□□□ -1.39
CD44-225ENST00000527326 PMS2P54278 862 aa6.34□□□□□ -1.39
CD44-225ENST00000527326 GDF10P55107 478 aa6.34□□□□□ -1.39
CD44-225ENST00000527326 MTTPP55157 894 aa6.34□□□□□ -1.39
CD44-225ENST00000527326 ATP8B2P98198 1209 aa6.34□□□□□ -1.39
CD44-225ENST00000527326 FOXK2Q01167 660 aa6.34□□□□□ -1.39
CD44-225ENST00000527326 ADRM1Q16186 407 aa6.34□□□□□ -1.39
CD44-225ENST00000527326 CNGA3Q16281 694 aa6.34□□□□□ -1.39
CD44-225ENST00000527326 SPRED3Q2MJR0 410 aa6.34□□□□□ -1.39
CD44-225ENST00000527326 TBC1D9BQ66K14 1250 aa6.34□□□□□ -1.39
CD44-225ENST00000527326 NCAPH2Q6IBW4 605 aa6.34□□□□□ -1.39
CD44-225ENST00000527326 FAM173BQ6P4H8 233 aa6.34□□□□□ -1.39
CD44-225ENST00000527326 PPFIBP1Q86W92 1011 aa6.34□□□□□ -1.39
CD44-225ENST00000527326 TMTC1Q8IUR5 882 aa6.34□□□□□ -1.39
CD44-225ENST00000527326 SYT2Q8N9I0 419 aaPredicted RBP6.34□□□□□ -1.39
CD44-225ENST00000527326 PLPP7Q8NBV4 271 aa6.34□□□□□ -1.39
CD44-225ENST00000527326 PPP1R14CQ8TAE6 165 aa6.34□□□□□ -1.39
CD44-225ENST00000527326 CAGE1Q8TC20 777 aa6.34□□□□□ -1.39
CD44-225ENST00000527326 TRPC4APQ8TEL6 797 aa6.34□□□□□ -1.39
CD44-225ENST00000527326 ATP8B4Q8TF62 1192 aa6.34□□□□□ -1.39
CD44-225ENST00000527326 NOC3LQ8WTT2 800 aaKnown RBP6.34□□□□□ -1.39
CD44-225ENST00000527326 RUFY2Q8WXA3 655 aa6.34□□□□□ -1.39
CD44-225ENST00000527326 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP6.34□□□□□ -1.39
CD44-225ENST00000527326 DPF2Q92785 391 aa6.34□□□□□ -1.39
CD44-225ENST00000527326 RILPL2Q969X0 211 aa6.34□□□□□ -1.39
CD44-225ENST00000527326 LENG1Q96BZ8 264 aaPredicted RBP6.34□□□□□ -1.39
CD44-225ENST00000527326 KLRG1Q96E93 195 aa6.34□□□□□ -1.39
CD44-225ENST00000527326 HIC2Q96JB3 615 aa6.34□□□□□ -1.39
CD44-225ENST00000527326 CLMNQ96JQ2 1002 aa6.34□□□□□ -1.39
CD44-225ENST00000527326 ZIM3Q96PE6 472 aa6.34□□□□□ -1.39
CD44-225ENST00000527326 RAB3IPQ96QF0 476 aaPredicted RBP6.34□□□□□ -1.39
CD44-225ENST00000527326 RPS6KC1Q96S38 1066 aa6.34□□□□□ -1.39
CD44-225ENST00000527326 SLF1Q9BQI6 1058 aa6.34□□□□□ -1.39
CD44-225ENST00000527326 FTOQ9C0B1 505 aaKnown RBP eCLIP6.34□□□□□ -1.39
CD44-225ENST00000527326 MRPL46Q9H2W6 279 aaKnown RBP6.34□□□□□ -1.39
CD44-225ENST00000527326 CNOT10Q9H9A5 744 aaKnown RBP6.34□□□□□ -1.39
CD44-225ENST00000527326 LRRC4BQ9NT99 713 aa6.34□□□□□ -1.39
CD44-225ENST00000527326 CCDC87Q9NVE4 849 aa6.34□□□□□ -1.39
CD44-225ENST00000527326 PANK4Q9NVE7 773 aa6.34□□□□□ -1.39
CD44-225ENST00000527326 IL1RAPL1Q9NZN1 696 aa6.34□□□□□ -1.39
CD44-225ENST00000527326 DLGAP2Q9P1A6 1054 aa6.34□□□□□ -1.39
CD44-225ENST00000527326 SLAIN2Q9P270 581 aa6.34□□□□□ -1.39
CD44-225ENST00000527326 RABL2AQ9UBK7 228 aaPredicted RBP6.34□□□□□ -1.39
CD44-225ENST00000527326 HESX1Q9UBX0 185 aa6.34□□□□□ -1.39
CD44-225ENST00000527326 CFDP1Q9UEE9 299 aaPredicted RBP6.34□□□□□ -1.39
CD44-225ENST00000527326 NOVA2Q9UNW9 492 aaKnown RBP6.34□□□□□ -1.39
CD44-225ENST00000527326 CARD8Q9Y2G2 431 aa6.34□□□□□ -1.39
CD44-225ENST00000527326 LUC7L2Q9Y383 392 aaKnown RBP6.34□□□□□ -1.39
CD44-225ENST00000527326 SAR1BQ9Y6B6 198 aa6.34□□□□□ -1.39
CD44-225ENST00000527326 BCL9O00512 1426 aa6.33□□□□□ -1.4
CD44-225ENST00000527326 ZNF142P52746 1687 aaPredicted RBP6.33□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 54.3 ms