RNA–Protein interactions for RNA: ENST00000526204.5

VPS28-205, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,120 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-205ENST00000526204 PLCB1Q9NQ66 1216 aa23.36■■□□□ 1.33
VPS28-205ENST00000526204 ARMCX3Q9UH62 379 aaPredicted RBP23.36■■□□□ 1.33
VPS28-205ENST00000526204 PCDHAC2Q9Y5I4 1007 aa23.36■■□□□ 1.33
VPS28-205ENST00000526204 FAM86B1E9PN63 330 aa23.35■■□□□ 1.33
VPS28-205ENST00000526204 FAM86B2P0C5J1 330 aa23.35■■□□□ 1.33
VPS28-205ENST00000526204 TRAF1Q13077 416 aa23.35■■□□□ 1.33
VPS28-205ENST00000526204 ASIC2Q16515 512 aa23.35■■□□□ 1.33
VPS28-205ENST00000526204 ZSCAN26Q16670 478 aa23.35■■□□□ 1.33
VPS28-205ENST00000526204 USH1GQ495M9 461 aa23.35■■□□□ 1.33
VPS28-205ENST00000526204 TBC1D5Q92609 795 aa23.35■■□□□ 1.33
VPS28-205ENST00000526204 REEP2Q9BRK0 252 aa23.35■■□□□ 1.33
VPS28-205ENST00000526204 HDAC9Q9UKV0 1011 aa23.35■■□□□ 1.33
VPS28-205ENST00000526204 SIPA1L1O43166 1804 aa23.35■■□□□ 1.33
VPS28-205ENST00000526204 ECE2O60344 883 aa23.35■■□□□ 1.33
VPS28-205ENST00000526204 CYP3A4P08684 503 aa23.35■■□□□ 1.33
VPS28-205ENST00000526204 ACTN2P35609 894 aa23.35■■□□□ 1.33
VPS28-205ENST00000526204 PSMC6P62333 389 aa23.35■■□□□ 1.33
VPS28-205ENST00000526204 CFAP221Q4G0U5 840 aa23.35■■□□□ 1.33
VPS28-205ENST00000526204 GLE1Q53GS7 698 aaKnown RBP23.35■■□□□ 1.33
VPS28-205ENST00000526204 C10orf76Q5T2E6 689 aa23.35■■□□□ 1.33
VPS28-205ENST00000526204 GPIHBP1Q8IV16 184 aa23.35■■□□□ 1.33
VPS28-205ENST00000526204 GOLGA6L1Q8N7Z2 621 aa23.35■■□□□ 1.33
VPS28-205ENST00000526204 AENQ8WTP8 325 aaKnown RBP23.35■■□□□ 1.33
VPS28-205ENST00000526204 AKT1S1Q96B36 256 aa23.35■■□□□ 1.33
VPS28-205ENST00000526204 LRRC1Q9BTT6 524 aa23.35■■□□□ 1.33
VPS28-205ENST00000526204 POLR3CQ9BUI4 534 aaPredicted RBP23.35■■□□□ 1.33
VPS28-205ENST00000526204 BZW2Q9Y6E2 419 aaKnown RBP23.35■■□□□ 1.33
VPS28-205ENST00000526204 BUB1O43683 1085 aa23.34■■□□□ 1.33
VPS28-205ENST00000526204 ENTPD3O75355 529 aa23.34■■□□□ 1.33
VPS28-205ENST00000526204 SYF2O95926 243 aaKnown RBP23.34■■□□□ 1.33
VPS28-205ENST00000526204 MYBL2P10244 700 aa23.34■■□□□ 1.33
VPS28-205ENST00000526204 RBM26Q5T8P6 1007 aaKnown RBP23.34■■□□□ 1.33
VPS28-205ENST00000526204 SFR1Q86XK3 245 aa23.34■■□□□ 1.33
VPS28-205ENST00000526204 ATRNL1Q5VV63 1379 aa23.34■■□□□ 1.33
VPS28-205ENST00000526204 PIK3CDO00329 1044 aa23.33■■□□□ 1.33
VPS28-205ENST00000526204 MEIS1O00470 390 aa23.33■■□□□ 1.33
VPS28-205ENST00000526204 RNF40O75150 1001 aa23.33■■□□□ 1.33
VPS28-205ENST00000526204 GDF11O95390 407 aa23.33■■□□□ 1.33
VPS28-205ENST00000526204 RPL13P26373 211 aaKnown RBP23.33■■□□□ 1.33
VPS28-205ENST00000526204 CXCR5P32302 372 aa23.33■■□□□ 1.33
VPS28-205ENST00000526204 CASP5P51878 434 aa23.33■■□□□ 1.33
VPS28-205ENST00000526204 BMT2Q1RMZ1 405 aa23.33■■□□□ 1.33
VPS28-205ENST00000526204 LEKR1Q6ZMV7 388 aa23.33■■□□□ 1.33
VPS28-205ENST00000526204 METTL14Q9HCE5 456 aaKnown RBP23.33■■□□□ 1.33
VPS28-205ENST00000526204 CWC15Q9P013 229 aaKnown RBP23.33■■□□□ 1.33
VPS28-205ENST00000526204 BRWD3Q6RI45 1802 aa23.33■■□□□ 1.33
VPS28-205ENST00000526204 MSH4O15457 936 aa23.33■■□□□ 1.32
VPS28-205ENST00000526204 PHACTR2O75167 634 aa23.33■■□□□ 1.32
VPS28-205ENST00000526204 AFPP02771 609 aaKnown RBP23.33■■□□□ 1.32
VPS28-205ENST00000526204 CAPN2P17655 700 aa23.33■■□□□ 1.32
VPS28-205ENST00000526204 SNAP25P60880 206 aa23.33■■□□□ 1.32
VPS28-205ENST00000526204 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP23.33■■□□□ 1.32
VPS28-205ENST00000526204 VAV3Q9UKW4 847 aa23.33■■□□□ 1.32
VPS28-205ENST00000526204 PCDHGC5Q9Y5F6 944 aa23.33■■□□□ 1.32
VPS28-205ENST00000526204 ZC3H4Q9UPT8 1303 aaKnown RBP23.33■■□□□ 1.32
VPS28-205ENST00000526204 NCK2O43639 380 aa23.32■■□□□ 1.32
VPS28-205ENST00000526204 FAM133AQ8N9E0 248 aa23.32■■□□□ 1.32
VPS28-205ENST00000526204 PSMB7Q99436 277 aa23.32■■□□□ 1.32
VPS28-205ENST00000526204 TYW1Q9NV66 732 aaKnown RBP23.32■■□□□ 1.32
VPS28-205ENST00000526204 STIM2Q9P246 746 aa23.32■■□□□ 1.32
VPS28-205ENST00000526204 A0A087X0T9 212 aa23.32■■□□□ 1.32
VPS28-205ENST00000526204 BTNL10A8MVZ5 291 aa23.32■■□□□ 1.32
VPS28-205ENST00000526204 SLC16A3O15427 465 aaKnown RBP23.32■■□□□ 1.32
VPS28-205ENST00000526204 EYA4O95677 639 aa23.32■■□□□ 1.32
VPS28-205ENST00000526204 FAM228BP0C875 321 aa23.32■■□□□ 1.32
VPS28-205ENST00000526204 XRCC5P13010 732 aaKnown RBP23.32■■□□□ 1.32
VPS28-205ENST00000526204 ZNF76P36508 570 aa23.32■■□□□ 1.32
VPS28-205ENST00000526204 KIAA0753Q2KHM9 967 aa23.32■■□□□ 1.32
VPS28-205ENST00000526204 STYK1Q6J9G0 422 aa23.32■■□□□ 1.32
VPS28-205ENST00000526204 FAM204AQ9H8W3 233 aa23.32■■□□□ 1.32
VPS28-205ENST00000526204 ADAMTS1Q9UHI8 967 aa23.32■■□□□ 1.32
VPS28-205ENST00000526204 TBCAO75347 108 aaKnown RBP23.31■■□□□ 1.32
VPS28-205ENST00000526204 PALMO75781 387 aa23.31■■□□□ 1.32
VPS28-205ENST00000526204 GH2P01242 217 aa23.31■■□□□ 1.32
VPS28-205ENST00000526204 TNFRSF8P28908 595 aa23.31■■□□□ 1.32
VPS28-205ENST00000526204 EXOC3L4Q17RC7 722 aa23.31■■□□□ 1.32
VPS28-205ENST00000526204 DMGDHQ9UI17 866 aaKnown RBP23.31■■□□□ 1.32
VPS28-205ENST00000526204 RABGAP1Q9Y3P9 1069 aa23.31■■□□□ 1.32
VPS28-205ENST00000526204 OPLAHO14841 1288 aa23.3■■□□□ 1.32
VPS28-205ENST00000526204 RPS6KA5O75582 802 aa23.3■■□□□ 1.32
VPS28-205ENST00000526204 PRPF6O94906 941 aaKnown RBP23.3■■□□□ 1.32
VPS28-205ENST00000526204 GAP43P17677 238 aa23.3■■□□□ 1.32
VPS28-205ENST00000526204 ANXA13P27216 316 aa23.3■■□□□ 1.32
VPS28-205ENST00000526204 HOXD13P35453 343 aa23.3■■□□□ 1.32
VPS28-205ENST00000526204 APBA1Q02410 837 aa23.3■■□□□ 1.32
VPS28-205ENST00000526204 ARID5AQ03989 594 aa23.3■■□□□ 1.32
VPS28-205ENST00000526204 HDAC7Q8WUI4 952 aa23.3■■□□□ 1.32
VPS28-205ENST00000526204 SPAG5Q96R06 1193 aa23.3■■□□□ 1.32
VPS28-205ENST00000526204 EIF2AK1Q9BQI3 630 aaKnown RBP23.3■■□□□ 1.32
VPS28-205ENST00000526204 BHMT2Q9H2M3 363 aa23.3■■□□□ 1.32
VPS28-205ENST00000526204 GRID2IPA4D2P6 1211 aa23.3■■□□□ 1.32
VPS28-205ENST00000526204 UCHL3P15374 230 aa23.3■■□□□ 1.32
VPS28-205ENST00000526204 KLRC1P26715 233 aa23.3■■□□□ 1.32
VPS28-205ENST00000526204 MATR3P43243 847 aaKnown RBP eCLIP23.3■■□□□ 1.32
VPS28-205ENST00000526204 EPHB4P54760 987 aa23.3■■□□□ 1.32
VPS28-205ENST00000526204 C8orf74Q6P047 294 aa23.3■■□□□ 1.32
VPS28-205ENST00000526204 EMBQ6PCB8 327 aa23.3■■□□□ 1.32
VPS28-205ENST00000526204 GSPT2Q8IYD1 628 aaKnown RBP23.3■■□□□ 1.32
VPS28-205ENST00000526204 AFAP1L1Q8TED9 768 aa23.3■■□□□ 1.32
VPS28-205ENST00000526204 OLFML3Q9NRN5 406 aa23.3■■□□□ 1.32
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms