RNA–Protein interactions for RNA: ENST00000524023.1

HDAC9-228, Transcript of histone deacetylase 9, humanhuman

TSL 2 BASIC

Gene HDAC9, Length 2,199 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC9-228ENST00000524023 TBX3O15119 743 aa12.17□□□□□ -0.46
HDAC9-228ENST00000524023 SHOX2O60902 331 aaPredicted RBP12.17□□□□□ -0.46
HDAC9-228ENST00000524023 SPATA31C1P0DKV0 1188 aa12.17□□□□□ -0.46
HDAC9-228ENST00000524023 RPA1P27694 616 aa12.17□□□□□ -0.46
HDAC9-228ENST00000524023 CRKP46108 304 aa12.17□□□□□ -0.46
HDAC9-228ENST00000524023 ENOX2Q16206 610 aaKnown RBP12.17□□□□□ -0.46
HDAC9-228ENST00000524023 CERKLQ49MI3 558 aaPredicted RBP12.17□□□□□ -0.46
HDAC9-228ENST00000524023 Q4G0T1 1027 aa12.17□□□□□ -0.46
HDAC9-228ENST00000524023 PRR16Q569H4 304 aa12.17□□□□□ -0.46
HDAC9-228ENST00000524023 FRMD5Q7Z6J6 570 aa12.17□□□□□ -0.46
HDAC9-228ENST00000524023 SYT2Q8N9I0 419 aaPredicted RBP12.17□□□□□ -0.46
HDAC9-228ENST00000524023 TSEN2Q8NCE0 465 aaKnown RBP12.17□□□□□ -0.46
HDAC9-228ENST00000524023 ERMNQ8TAM6 284 aa12.17□□□□□ -0.46
HDAC9-228ENST00000524023 PACSIN1Q9BY11 444 aa12.17□□□□□ -0.46
HDAC9-228ENST00000524023 DNM3Q9UQ16 869 aa12.17□□□□□ -0.46
HDAC9-228ENST00000524023 GRID2IPA4D2P6 1211 aa12.16□□□□□ -0.46
HDAC9-228ENST00000524023 GOLGA8KD6RF30 607 aa12.16□□□□□ -0.46
HDAC9-228ENST00000524023 MEIS1O00470 390 aa12.16□□□□□ -0.46
HDAC9-228ENST00000524023 ACTN1P12814 892 aa12.16□□□□□ -0.46
HDAC9-228ENST00000524023 HOXD13P35453 343 aa12.16□□□□□ -0.46
HDAC9-228ENST00000524023 PABPC4Q13310 644 aaKnown RBP eCLIP12.16□□□□□ -0.46
HDAC9-228ENST00000524023 NNTQ13423 1086 aa12.16□□□□□ -0.46
HDAC9-228ENST00000524023 KNOP1Q1ED39 458 aaKnown RBP12.16□□□□□ -0.46
HDAC9-228ENST00000524023 ALS2CLQ60I27 953 aa12.16□□□□□ -0.46
HDAC9-228ENST00000524023 EPM2AIP1Q7L775 607 aaPredicted RBP12.16□□□□□ -0.46
HDAC9-228ENST00000524023 IRF2BP2Q7Z5L9 587 aa12.16□□□□□ -0.46
HDAC9-228ENST00000524023 SFR1Q86XK3 245 aa12.16□□□□□ -0.46
HDAC9-228ENST00000524023 SIAH1Q8IUQ4 282 aa12.16□□□□□ -0.46
HDAC9-228ENST00000524023 IFT20Q8IY31 132 aa12.16□□□□□ -0.46
HDAC9-228ENST00000524023 LENG9Q96B70 501 aa12.16□□□□□ -0.46
HDAC9-228ENST00000524023 REEP2Q9BRK0 252 aa12.16□□□□□ -0.46
HDAC9-228ENST00000524023 PLCB1Q9NQ66 1216 aa12.16□□□□□ -0.46
HDAC9-228ENST00000524023 GDF3Q9NR23 364 aa12.16□□□□□ -0.46
HDAC9-228ENST00000524023 ARMCX3Q9UH62 379 aaPredicted RBP12.16□□□□□ -0.46
HDAC9-228ENST00000524023 DDTLA6NHG4 134 aaPredicted RBP12.16□□□□□ -0.46
HDAC9-228ENST00000524023 BTNL10A8MVZ5 291 aa12.16□□□□□ -0.46
HDAC9-228ENST00000524023 OPA1O60313 960 aa12.16□□□□□ -0.46
HDAC9-228ENST00000524023 ONECUT3O60422 494 aaPredicted RBP12.16□□□□□ -0.46
HDAC9-228ENST00000524023 PPFIA4O75335 1185 aa12.16□□□□□ -0.46
HDAC9-228ENST00000524023 AFPP02771 609 aaKnown RBP12.16□□□□□ -0.46
HDAC9-228ENST00000524023 GLI1P08151 1106 aa12.16□□□□□ -0.46
HDAC9-228ENST00000524023 SLC9A1P19634 815 aa12.16□□□□□ -0.46
HDAC9-228ENST00000524023 DNA2P51530 1060 aa12.16□□□□□ -0.46
HDAC9-228ENST00000524023 CACNB3P54284 484 aa12.16□□□□□ -0.46
HDAC9-228ENST00000524023 TCP10Q12799 353 aa12.16□□□□□ -0.46
HDAC9-228ENST00000524023 SLC27A3Q5K4L6 730 aa12.16□□□□□ -0.46
HDAC9-228ENST00000524023 MCTP2Q6DN12 878 aa12.16□□□□□ -0.46
HDAC9-228ENST00000524023 ZDHHC15Q96MV8 337 aa12.16□□□□□ -0.46
HDAC9-228ENST00000524023 AMNQ9BXJ7 453 aa12.16□□□□□ -0.46
HDAC9-228ENST00000524023 NRXN2Q9P2S2 1712 aa12.16□□□□□ -0.46
HDAC9-228ENST00000524023 FAM86B1E9PN63 330 aa12.15□□□□□ -0.46
HDAC9-228ENST00000524023 G3V3G9 751 aa12.15□□□□□ -0.46
HDAC9-228ENST00000524023 PDXKO00764 312 aa12.15□□□□□ -0.46
HDAC9-228ENST00000524023 TRIM66O15016 1216 aa12.15□□□□□ -0.46
HDAC9-228ENST00000524023 FAM86B2P0C5J1 330 aa12.15□□□□□ -0.46
HDAC9-228ENST00000524023 MYBP10242 640 aa12.15□□□□□ -0.46
HDAC9-228ENST00000524023 EPB41P11171 864 aaKnown RBP12.15□□□□□ -0.46
HDAC9-228ENST00000524023 UCHL3P15374 230 aa12.15□□□□□ -0.46
HDAC9-228ENST00000524023 SNAP25P60880 206 aa12.15□□□□□ -0.46
HDAC9-228ENST00000524023 PTK2Q05397 1052 aa12.15□□□□□ -0.46
HDAC9-228ENST00000524023 PPFIA1Q13136 1202 aa12.15□□□□□ -0.46
HDAC9-228ENST00000524023 C10orf76Q5T2E6 689 aa12.15□□□□□ -0.46
HDAC9-228ENST00000524023 DCAF8Q5TAQ9 597 aa12.15□□□□□ -0.46
HDAC9-228ENST00000524023 ZNF571Q7Z3V5 609 aaPredicted RBP12.15□□□□□ -0.46
HDAC9-228ENST00000524023 SEPT12Q8IYM1 358 aa12.15□□□□□ -0.46
HDAC9-228ENST00000524023 INPP4AQ96PE3 977 aaPredicted RBP12.15□□□□□ -0.46
HDAC9-228ENST00000524023 PI4KBQ9UBF8 816 aa12.15□□□□□ -0.46
HDAC9-228ENST00000524023 RSPH14Q9UHP6 348 aa12.15□□□□□ -0.46
HDAC9-228ENST00000524023 PACSIN2Q9UNF0 486 aaPredicted RBP12.15□□□□□ -0.46
HDAC9-228ENST00000524023 PCDHAC2Q9Y5I4 1007 aa12.15□□□□□ -0.46
HDAC9-228ENST00000524023 UBAP1LF5GYI3 381 aa12.15□□□□□ -0.47
HDAC9-228ENST00000524023 CALUO43852 315 aaPredicted RBP12.15□□□□□ -0.47
HDAC9-228ENST00000524023 HSF2BPO75031 334 aa12.15□□□□□ -0.47
HDAC9-228ENST00000524023 HEXIM1O94992 359 aaKnown RBP12.15□□□□□ -0.47
HDAC9-228ENST00000524023 FOSP01100 380 aaPredicted RBP12.15□□□□□ -0.47
HDAC9-228ENST00000524023 NPR1P16066 1061 aa12.15□□□□□ -0.47
HDAC9-228ENST00000524023 PON1P27169 355 aa12.15□□□□□ -0.47
HDAC9-228ENST00000524023 SREBF1P36956 1147 aa12.15□□□□□ -0.47
HDAC9-228ENST00000524023 CARSP49589 748 aaKnown RBP12.15□□□□□ -0.47
HDAC9-228ENST00000524023 ICA1Q05084 483 aa12.15□□□□□ -0.47
HDAC9-228ENST00000524023 EXOC3L4Q17RC7 722 aa12.15□□□□□ -0.47
HDAC9-228ENST00000524023 TATDN1Q6P1N9 297 aa12.15□□□□□ -0.47
HDAC9-228ENST00000524023 FBXO11Q86XK2 927 aa12.15□□□□□ -0.47
HDAC9-228ENST00000524023 ZFP91Q96JP5 570 aaPredicted RBP12.15□□□□□ -0.47
HDAC9-228ENST00000524023 FAM20AQ96MK3 541 aa12.15□□□□□ -0.47
HDAC9-228ENST00000524023 SPAG5Q96R06 1193 aa12.15□□□□□ -0.47
HDAC9-228ENST00000524023 FAM198AQ9UFP1 575 aa12.15□□□□□ -0.47
HDAC9-228ENST00000524023 STK24Q9Y6E0 443 aa12.15□□□□□ -0.47
HDAC9-228ENST00000524023 BZW2Q9Y6E2 419 aaKnown RBP12.15□□□□□ -0.47
HDAC9-228ENST00000524023 ZSCAN5CA6NGD5 496 aaPredicted RBP12.14□□□□□ -0.47
HDAC9-228ENST00000524023 SPDYE3A6NKU9 549 aa12.14□□□□□ -0.47
HDAC9-228ENST00000524023 F5H6K3 240 aa12.14□□□□□ -0.47
HDAC9-228ENST00000524023 AKAP3O75969 853 aa12.14□□□□□ -0.47
HDAC9-228ENST00000524023 XRCC5P13010 732 aaKnown RBP12.14□□□□□ -0.47
HDAC9-228ENST00000524023 MMP14P50281 582 aa12.14□□□□□ -0.47
HDAC9-228ENST00000524023 GUCY2DQ02846 1103 aa12.14□□□□□ -0.47
HDAC9-228ENST00000524023 KLRC3Q07444 240 aa12.14□□□□□ -0.47
HDAC9-228ENST00000524023 BMT2Q1RMZ1 405 aa12.14□□□□□ -0.47
HDAC9-228ENST00000524023 USH1GQ495M9 461 aa12.14□□□□□ -0.47
HDAC9-228ENST00000524023 SH3BP5LQ7L8J4 393 aa12.14□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms