RNA–Protein interactions for RNA: ENST00000524006.5

SPIDR-222, Transcript of scaffold protein involved in DNA repair, human

TSL 5

Gene SPIDR, Length 970 nt, Biotype protein coding, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SPIDR-222	ENST00000524006	MRPL44	Q9H9J2	332 aa	Known RBP	11.9	□□□□□ -0.5
SPIDR-222	ENST00000524006	LZTFL1	Q9NQ48	299 aa		11.9	□□□□□ -0.5
SPIDR-222	ENST00000524006	MAP3K20	Q9NYL2	800 aa	Known RBP	11.9	□□□□□ -0.5
SPIDR-222	ENST00000524006	CGN	Q9P2M7	1197 aa	Known RBP	11.9	□□□□□ -0.5
SPIDR-222	ENST00000524006	TSKS	Q9UJT2	592 aa		11.9	□□□□□ -0.5
SPIDR-222	ENST00000524006	VAV3	Q9UKW4	847 aa		11.9	□□□□□ -0.5
SPIDR-222	ENST00000524006	CAPN11	Q9UMQ6	739 aa		11.9	□□□□□ -0.5
SPIDR-222	ENST00000524006	UBE4B	O95155	1302 aa		11.89	□□□□□ -0.51
SPIDR-222	ENST00000524006		A0A1W2PQJ5	194 aa		11.89	□□□□□ -0.51
SPIDR-222	ENST00000524006	OPLAH	O14841	1288 aa		11.89	□□□□□ -0.51
SPIDR-222	ENST00000524006	GCNT3	O95395	438 aa		11.89	□□□□□ -0.51
SPIDR-222	ENST00000524006	VCAM1	P19320	739 aa		11.89	□□□□□ -0.51
SPIDR-222	ENST00000524006	SLC12A3	P55017	1021 aa		11.89	□□□□□ -0.51
SPIDR-222	ENST00000524006	PPP2R3A	Q06190	1150 aa		11.89	□□□□□ -0.51
SPIDR-222	ENST00000524006	SPA17	Q15506	151 aa		11.89	□□□□□ -0.51
SPIDR-222	ENST00000524006	ECM1	Q16610	540 aa		11.89	□□□□□ -0.51
SPIDR-222	ENST00000524006	NIPA1	Q7RTP0	329 aa		11.89	□□□□□ -0.51
SPIDR-222	ENST00000524006	SFR1	Q86XK3	245 aa		11.89	□□□□□ -0.51
SPIDR-222	ENST00000524006	IRF2BP1	Q8IU81	584 aa		11.89	□□□□□ -0.51
SPIDR-222	ENST00000524006	ZC3H15	Q8WU90	426 aa	Known RBP	11.89	□□□□□ -0.51
SPIDR-222	ENST00000524006	AGBL1	Q96MI9	1066 aa		11.89	□□□□□ -0.51
SPIDR-222	ENST00000524006	NACC1	Q96RE7	527 aa		11.89	□□□□□ -0.51
SPIDR-222	ENST00000524006	ERGIC2	Q96RQ1	377 aa		11.89	□□□□□ -0.51
SPIDR-222	ENST00000524006	REEP2	Q9BRK0	252 aa		11.89	□□□□□ -0.51
SPIDR-222	ENST00000524006	NDST4	Q9H3R1	872 aa		11.89	□□□□□ -0.51
SPIDR-222	ENST00000524006	MMRN2	Q9H8L6	949 aa		11.89	□□□□□ -0.51
SPIDR-222	ENST00000524006	LUC7L	Q9NQ29	371 aa	Known RBP	11.89	□□□□□ -0.51
SPIDR-222	ENST00000524006	EMILIN3	Q9NT22	766 aa		11.89	□□□□□ -0.51
SPIDR-222	ENST00000524006	FAM184B	Q9ULE4	1060 aa		11.89	□□□□□ -0.51
SPIDR-222	ENST00000524006	PPP1R9A	Q9ULJ8	1098 aa		11.89	□□□□□ -0.51
SPIDR-222	ENST00000524006	SAMM50	Q9Y512	469 aa		11.89	□□□□□ -0.51
SPIDR-222	ENST00000524006	RLF	Q13129	1914 aa		11.88	□□□□□ -0.51
SPIDR-222	ENST00000524006	IGLV3-22	A0A075B6J6	115 aa		11.88	□□□□□ -0.51
SPIDR-222	ENST00000524006	NPHP3-ACAD11	A0A0J9YXS1	232 aa		11.88	□□□□□ -0.51
SPIDR-222	ENST00000524006	TTC26	A0AVF1	554 aa		11.88	□□□□□ -0.51
SPIDR-222	ENST00000524006	PHF20L1	A8MW92	1017 aa		11.88	□□□□□ -0.51
SPIDR-222	ENST00000524006	DDX39A	O00148	427 aa	Known RBP	11.88	□□□□□ -0.51
SPIDR-222	ENST00000524006	IPO5	O00410	1097 aa	Known RBP	11.88	□□□□□ -0.51
SPIDR-222	ENST00000524006	CTIF	O43310	598 aa	Known RBP	11.88	□□□□□ -0.51
SPIDR-222	ENST00000524006	EPB41	P11171	864 aa	Known RBP	11.88	□□□□□ -0.51
SPIDR-222	ENST00000524006	FECH	P22830	423 aa		11.88	□□□□□ -0.51
SPIDR-222	ENST00000524006	INPP5B	P32019	993 aa		11.88	□□□□□ -0.51
SPIDR-222	ENST00000524006	HSD17B4	P51659	736 aa		11.88	□□□□□ -0.51
SPIDR-222	ENST00000524006	SPIRE1	Q08AE8	756 aa		11.88	□□□□□ -0.51
SPIDR-222	ENST00000524006	CTTN	Q14247	550 aa	Known RBP	11.88	□□□□□ -0.51
SPIDR-222	ENST00000524006	MTF1	Q14872	753 aa		11.88	□□□□□ -0.51
SPIDR-222	ENST00000524006	EDRF1	Q3B7T1	1238 aa		11.88	□□□□□ -0.51
SPIDR-222	ENST00000524006	SUPT20HL1	Q3ZLR7	823 aa		11.88	□□□□□ -0.51
SPIDR-222	ENST00000524006	FIGN	Q5HY92	759 aa		11.88	□□□□□ -0.51
SPIDR-222	ENST00000524006	ANGEL2	Q5VTE6	544 aa	Known RBP	11.88	□□□□□ -0.51
SPIDR-222	ENST00000524006	DLK2	Q6UY11	383 aa		11.88	□□□□□ -0.51
SPIDR-222	ENST00000524006	RAD9B	Q6WBX8	426 aa		11.88	□□□□□ -0.51
SPIDR-222	ENST00000524006	PDCL2	Q8N4E4	241 aa		11.88	□□□□□ -0.51
SPIDR-222	ENST00000524006	DYDC2	Q96IM9	177 aa		11.88	□□□□□ -0.51
SPIDR-222	ENST00000524006	RIT2	Q99578	217 aa		11.88	□□□□□ -0.51
SPIDR-222	ENST00000524006	DNAJC7	Q99615	494 aa		11.88	□□□□□ -0.51
SPIDR-222	ENST00000524006	MXRA8	Q9BRK3	442 aa		11.88	□□□□□ -0.51
SPIDR-222	ENST00000524006	BEGAIN	Q9BUH8	593 aa		11.88	□□□□□ -0.51
SPIDR-222	ENST00000524006	WDR18	Q9BV38	432 aa		11.88	□□□□□ -0.51
SPIDR-222	ENST00000524006	TSGA10	Q9BZW7	698 aa		11.88	□□□□□ -0.51
SPIDR-222	ENST00000524006	NUCKS1	Q9H1E3	243 aa	Known RBP	11.88	□□□□□ -0.51
SPIDR-222	ENST00000524006	RAVER2	Q9HCJ3	691 aa	Known RBP	11.88	□□□□□ -0.51
SPIDR-222	ENST00000524006	ARGLU1	Q9NWB6	273 aa	Predicted RBP	11.88	□□□□□ -0.51
SPIDR-222	ENST00000524006	KCND2	Q9NZV8	630 aa		11.88	□□□□□ -0.51
SPIDR-222	ENST00000524006	PKD2L1	Q9P0L9	805 aa		11.88	□□□□□ -0.51
SPIDR-222	ENST00000524006	MYO1A	Q9UBC5	1043 aa		11.88	□□□□□ -0.51
SPIDR-222	ENST00000524006	SEL1L	Q9UBV2	794 aa		11.88	□□□□□ -0.51
SPIDR-222	ENST00000524006	SCAF8	Q9UPN6	1271 aa	Known RBP	11.88	□□□□□ -0.51
SPIDR-222	ENST00000524006	UTP18	Q9Y5J1	556 aa	Known RBP eCLIP	11.88	□□□□□ -0.51
SPIDR-222	ENST00000524006	ADGRG1	Q9Y653	693 aa		11.88	□□□□□ -0.51
SPIDR-222	ENST00000524006	TRPM7	Q96QT4	1865 aa		11.88	□□□□□ -0.51
SPIDR-222	ENST00000524006	FRMPD4	Q14CM0	1322 aa		11.87	□□□□□ -0.51
SPIDR-222	ENST00000524006	MYH10	P35580	1976 aa		11.87	□□□□□ -0.51
SPIDR-222	ENST00000524006	TNRC18	O15417	2968 aa	Predicted RBP	11.87	□□□□□ -0.51
SPIDR-222	ENST00000524006		A0A0G2JMZ2	1700 aa		11.87	□□□□□ -0.51
SPIDR-222	ENST00000524006	CTAGE9	A4FU28	777 aa		11.87	□□□□□ -0.51
SPIDR-222	ENST00000524006	NR2F2	P24468	414 aa		11.87	□□□□□ -0.51
SPIDR-222	ENST00000524006	EHHADH	Q08426	723 aa		11.87	□□□□□ -0.51
SPIDR-222	ENST00000524006	TUBB2A	Q13885	445 aa		11.87	□□□□□ -0.51
SPIDR-222	ENST00000524006	EPHA7	Q15375	998 aa		11.87	□□□□□ -0.51
SPIDR-222	ENST00000524006	NBPF12	Q5TAG4	269 aa	Predicted RBP	11.87	□□□□□ -0.51
SPIDR-222	ENST00000524006	ARHGEF16	Q5VV41	709 aa		11.87	□□□□□ -0.51
SPIDR-222	ENST00000524006	PCNX4	Q63HM2	1172 aa		11.87	□□□□□ -0.51
SPIDR-222	ENST00000524006	NSMF	Q6X4W1	530 aa		11.87	□□□□□ -0.51
SPIDR-222	ENST00000524006	RNF207	Q6ZRF8	634 aa		11.87	□□□□□ -0.51
SPIDR-222	ENST00000524006	LRRC55	Q6ZSA7	311 aa		11.87	□□□□□ -0.51
SPIDR-222	ENST00000524006	HS2ST1	Q7LGA3	356 aa		11.87	□□□□□ -0.51
SPIDR-222	ENST00000524006	MYCT1	Q8N699	235 aa		11.87	□□□□□ -0.51
SPIDR-222	ENST00000524006	ZNF280C	Q8ND82	737 aa		11.87	□□□□□ -0.51
SPIDR-222	ENST00000524006	ACRBP	Q8NEB7	543 aa		11.87	□□□□□ -0.51
SPIDR-222	ENST00000524006	ZNF507	Q8TCN5	953 aa		11.87	□□□□□ -0.51
SPIDR-222	ENST00000524006	EEF2KMT	Q96G04	330 aa		11.87	□□□□□ -0.51
SPIDR-222	ENST00000524006	HHIPL1	Q96JK4	782 aa		11.87	□□□□□ -0.51
SPIDR-222	ENST00000524006	TEPSIN	Q96N21	525 aa		11.87	□□□□□ -0.51
SPIDR-222	ENST00000524006	P2RX7	Q99572	595 aa	Known RBP	11.87	□□□□□ -0.51
SPIDR-222	ENST00000524006	TUBB2B	Q9BVA1	445 aa		11.87	□□□□□ -0.51
SPIDR-222	ENST00000524006	ZNF408	Q9H9D4	720 aa		11.87	□□□□□ -0.51
SPIDR-222	ENST00000524006	SLC38A10	Q9HBR0	1119 aa		11.87	□□□□□ -0.51
SPIDR-222	ENST00000524006	RNF146	Q9NTX7	359 aa		11.87	□□□□□ -0.51
SPIDR-222	ENST00000524006	GGA3	Q9NZ52	723 aa		11.87	□□□□□ -0.51

Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms