RNA–Protein interactions for RNA: ENST00000523511.1

LSM1-205, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 3

Gene LSM1, Length 700 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-205ENST00000523511 TUBE1Q9UJT0 475 aa18.46■□□□□ 0.55
LSM1-205ENST00000523511 SAMM50Q9Y512 469 aa18.46■□□□□ 0.55
LSM1-205ENST00000523511 PCDHA11Q9Y5I1 949 aa18.46■□□□□ 0.55
LSM1-205ENST00000523511 PCDHA10Q9Y5I2 948 aa18.46■□□□□ 0.55
LSM1-205ENST00000523511 POTEB3A0JP26 581 aa18.45■□□□□ 0.54
LSM1-205ENST00000523511 SEC24BO95487 1268 aa18.45■□□□□ 0.54
LSM1-205ENST00000523511 PDXDC2PQ6P474 469 aa18.45■□□□□ 0.54
LSM1-205ENST00000523511 POTEBQ6S5H4 581 aa18.45■□□□□ 0.54
LSM1-205ENST00000523511 ABHD15Q6UXT9 468 aa18.45■□□□□ 0.54
LSM1-205ENST00000523511 RPAINQ86UA6 219 aa18.45■□□□□ 0.54
LSM1-205ENST00000523511 CKAP2LQ8IYA6 745 aa18.45■□□□□ 0.54
LSM1-205ENST00000523511 SEPT8Q92599 483 aa18.45■□□□□ 0.54
LSM1-205ENST00000523511 RIT2Q99578 217 aa18.45■□□□□ 0.54
LSM1-205ENST00000523511 ZBED2Q9BTP6 218 aa18.45■□□□□ 0.54
LSM1-205ENST00000523511 ZNF302Q9NR11 478 aa18.45■□□□□ 0.54
LSM1-205ENST00000523511 LIMCH1Q9UPQ0 1083 aa18.45■□□□□ 0.54
LSM1-205ENST00000523511 GRXCR1A8MXD5 290 aa18.44■□□□□ 0.54
LSM1-205ENST00000523511 M0QZ92 97 aa18.44■□□□□ 0.54
LSM1-205ENST00000523511 HBP1O60381 514 aa18.44■□□□□ 0.54
LSM1-205ENST00000523511 INSRRP14616 1297 aa18.44■□□□□ 0.54
LSM1-205ENST00000523511 SFNP31947 248 aa18.44■□□□□ 0.54
LSM1-205ENST00000523511 IGBP1P78318 339 aa18.44■□□□□ 0.54
LSM1-205ENST00000523511 ADAM17P78536 824 aa18.44■□□□□ 0.54
LSM1-205ENST00000523511 HIC1Q14526 733 aa18.44■□□□□ 0.54
LSM1-205ENST00000523511 ME3Q16798 604 aa18.44■□□□□ 0.54
LSM1-205ENST00000523511 Q4G0T1 1027 aa18.44■□□□□ 0.54
LSM1-205ENST00000523511 IER5Q5VY09 327 aa18.44■□□□□ 0.54
LSM1-205ENST00000523511 SWSAP1Q6NVH7 229 aa18.44■□□□□ 0.54
LSM1-205ENST00000523511 MOXD1Q6UVY6 613 aa18.44■□□□□ 0.54
LSM1-205ENST00000523511 APBB2Q92870 758 aa18.44■□□□□ 0.54
LSM1-205ENST00000523511 GTF3C6Q969F1 213 aa18.44■□□□□ 0.54
LSM1-205ENST00000523511 ZSCAN31Q96LW9 406 aaPredicted RBP18.44■□□□□ 0.54
LSM1-205ENST00000523511 CDX2Q99626 313 aaPredicted RBP18.44■□□□□ 0.54
LSM1-205ENST00000523511 PHF20Q9BVI0 1012 aa18.44■□□□□ 0.54
LSM1-205ENST00000523511 TELO2Q9Y4R8 837 aa18.44■□□□□ 0.54
LSM1-205ENST00000523511 CYP3A7-CYP3A51PA0A087WV96 503 aa18.43■□□□□ 0.54
LSM1-205ENST00000523511 IGKV6D-21A0A0A0MT36 114 aa18.43■□□□□ 0.54
LSM1-205ENST00000523511 WDR64B1ANS9 1081 aa18.43■□□□□ 0.54
LSM1-205ENST00000523511 DHX15O43143 795 aaKnown RBP18.43■□□□□ 0.54
LSM1-205ENST00000523511 MARCH6O60337 910 aa18.43■□□□□ 0.54
LSM1-205ENST00000523511 GAS7O60861 476 aa18.43■□□□□ 0.54
LSM1-205ENST00000523511 NBNO60934 754 aa18.43■□□□□ 0.54
LSM1-205ENST00000523511 CYP3A7P24462 503 aa18.43■□□□□ 0.54
LSM1-205ENST00000523511 ZNF484Q5JVG2 852 aa18.43■□□□□ 0.54
LSM1-205ENST00000523511 FAM43BQ6ZT52 329 aaPredicted RBP18.43■□□□□ 0.54
LSM1-205ENST00000523511 NME8Q8N427 588 aa18.43■□□□□ 0.54
LSM1-205ENST00000523511 TEKT3Q9BXF9 490 aa18.43■□□□□ 0.54
LSM1-205ENST00000523511 KCNJ14Q9UNX9 436 aa18.43■□□□□ 0.54
LSM1-205ENST00000523511 CEP131Q9UPN4 1083 aa18.43■□□□□ 0.54
LSM1-205ENST00000523511 MBLAC1A4D2B0 266 aaPredicted RBP18.42■□□□□ 0.54
LSM1-205ENST00000523511 AMHP03971 560 aa18.42■□□□□ 0.54
LSM1-205ENST00000523511 PBX2P40425 430 aa18.42■□□□□ 0.54
LSM1-205ENST00000523511 JAK3P52333 1124 aa18.42■□□□□ 0.54
LSM1-205ENST00000523511 PLCB4Q15147 1175 aa18.42■□□□□ 0.54
LSM1-205ENST00000523511 FAM26DQ5JW98 314 aa18.42■□□□□ 0.54
LSM1-205ENST00000523511 LRCH2Q5VUJ6 765 aa18.42■□□□□ 0.54
LSM1-205ENST00000523511 HERC6Q8IVU3 1022 aa18.42■□□□□ 0.54
LSM1-205ENST00000523511 NECAB1Q8N987 351 aa18.42■□□□□ 0.54
LSM1-205ENST00000523511 ATP8B4Q8TF62 1192 aa18.42■□□□□ 0.54
LSM1-205ENST00000523511 PCYT2Q99447 389 aa18.42■□□□□ 0.54
LSM1-205ENST00000523511 GAS2L1Q99501 681 aaPredicted RBP18.42■□□□□ 0.54
LSM1-205ENST00000523511 TTYH1Q9H313 450 aaPredicted RBP18.42■□□□□ 0.54
LSM1-205ENST00000523511 NRBP2Q9NSY0 501 aa18.42■□□□□ 0.54
LSM1-205ENST00000523511 PCDHA2Q9Y5H9 948 aa18.42■□□□□ 0.54
LSM1-205ENST00000523511 M0R2N6 131 aa18.41■□□□□ 0.54
LSM1-205ENST00000523511 TLL1O43897 1013 aa18.41■□□□□ 0.54
LSM1-205ENST00000523511 CCNE2O96020 404 aa18.41■□□□□ 0.54
LSM1-205ENST00000523511 CTSHP09668 335 aa18.41■□□□□ 0.54
LSM1-205ENST00000523511 GCFC2P16383 781 aaKnown RBP18.41■□□□□ 0.54
LSM1-205ENST00000523511 KRT2P35908 639 aa18.41■□□□□ 0.54
LSM1-205ENST00000523511 SAFBQ15424 915 aaKnown RBP eCLIP18.41■□□□□ 0.54
LSM1-205ENST00000523511 PPP2R2DQ66LE6 453 aa18.41■□□□□ 0.54
LSM1-205ENST00000523511 NEK8Q86SG6 692 aa18.41■□□□□ 0.54
LSM1-205ENST00000523511 USP38Q8NB14 1042 aa18.41■□□□□ 0.54
LSM1-205ENST00000523511 DBF4BQ8NFT6 615 aa18.41■□□□□ 0.54
LSM1-205ENST00000523511 RDM1Q8NG50 284 aa18.41■□□□□ 0.54
LSM1-205ENST00000523511 BBXQ8WY36 941 aaPredicted RBP18.41■□□□□ 0.54
LSM1-205ENST00000523511 WNT8BQ93098 351 aa18.41■□□□□ 0.54
LSM1-205ENST00000523511 VWCEQ96DN2 955 aa18.41■□□□□ 0.54
LSM1-205ENST00000523511 FAM167AQ96KS9 214 aa18.41■□□□□ 0.54
LSM1-205ENST00000523511 AIFM3Q96NN9 605 aa18.41■□□□□ 0.54
LSM1-205ENST00000523511 GUCD1Q96NT3 240 aa18.41■□□□□ 0.54
LSM1-205ENST00000523511 DDX25Q9UHL0 483 aaKnown RBP18.41■□□□□ 0.54
LSM1-205ENST00000523511 ADAMTS3O15072 1205 aa18.4■□□□□ 0.54
LSM1-205ENST00000523511 MSH4O15457 936 aa18.4■□□□□ 0.54
LSM1-205ENST00000523511 FOSL2P15408 326 aa18.4■□□□□ 0.54
LSM1-205ENST00000523511 WDR5P61964 334 aaKnown RBP18.4■□□□□ 0.54
LSM1-205ENST00000523511 GPNMBQ14956 572 aa18.4■□□□□ 0.54
LSM1-205ENST00000523511 LETM2Q2VYF4 491 aa18.4■□□□□ 0.54
LSM1-205ENST00000523511 C8orf34Q49A92 452 aa18.4■□□□□ 0.54
LSM1-205ENST00000523511 PLEKHG4Q58EX7 1191 aa18.4■□□□□ 0.54
LSM1-205ENST00000523511 PPP4R3AQ6IN85 833 aa18.4■□□□□ 0.54
LSM1-205ENST00000523511 TRAF7Q6Q0C0 670 aa18.4■□□□□ 0.54
LSM1-205ENST00000523511 DNAJB3Q8WWF6 145 aa18.4■□□□□ 0.54
LSM1-205ENST00000523511 SLC5A5Q92911 643 aa18.4■□□□□ 0.54
LSM1-205ENST00000523511 LLPHQ9BRT6 129 aaKnown RBP18.4■□□□□ 0.54
LSM1-205ENST00000523511 NKX2-4Q9H2Z4 354 aa18.4■□□□□ 0.54
LSM1-205ENST00000523511 SH2B1Q9NRF2 756 aaPredicted RBP18.4■□□□□ 0.54
LSM1-205ENST00000523511 DISC1Q9NRI5 854 aa18.4■□□□□ 0.54
LSM1-205ENST00000523511 GABBR1Q9UBS5 961 aa18.4■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms