RNA–Protein interactions for RNA: ENST00000519664.1

SYNPO-204, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 4,571 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-204ENST00000519664 WDR11Q9BZH6 1224 aa12.71□□□□□ -0.38
SYNPO-204ENST00000519664 DDX47Q9H0S4 455 aaKnown RBP12.71□□□□□ -0.38
SYNPO-204ENST00000519664 DEPDC5O75140 1603 aa12.71□□□□□ -0.38
SYNPO-204ENST00000519664 A0A087WUV0 522 aaPredicted RBP12.71□□□□□ -0.38
SYNPO-204ENST00000519664 POC1B-GALNT4F8VUJ3 575 aa12.71□□□□□ -0.38
SYNPO-204ENST00000519664 AOC3Q16853 763 aa12.71□□□□□ -0.38
SYNPO-204ENST00000519664 TSNARE1Q96NA8 513 aa12.71□□□□□ -0.38
SYNPO-204ENST00000519664 KMT5AQ9NQR1 393 aa12.71□□□□□ -0.38
SYNPO-204ENST00000519664 FRMPD1Q5SYB0 1578 aa12.7□□□□□ -0.38
SYNPO-204ENST00000519664 PREX1Q8TCU6 1659 aa12.7□□□□□ -0.38
SYNPO-204ENST00000519664 NR3C1P04150 777 aa12.7□□□□□ -0.38
SYNPO-204ENST00000519664 PTK2Q05397 1052 aa12.7□□□□□ -0.38
SYNPO-204ENST00000519664 TMEM179Q6ZVK1 233 aa12.7□□□□□ -0.38
SYNPO-204ENST00000519664 ILDR1Q86SU0 546 aaPredicted RBP12.7□□□□□ -0.38
SYNPO-204ENST00000519664 SMC6Q96SB8 1091 aa12.7□□□□□ -0.38
SYNPO-204ENST00000519664 DNAJC12Q9UKB3 198 aa12.7□□□□□ -0.38
SYNPO-204ENST00000519664 NOVA2Q9UNW9 492 aaKnown RBP12.7□□□□□ -0.38
SYNPO-204ENST00000519664 DAGLAQ9Y4D2 1042 aa12.7□□□□□ -0.38
SYNPO-204ENST00000519664 CD2APQ9Y5K6 639 aa12.7□□□□□ -0.38
SYNPO-204ENST00000519664 NPR1P16066 1061 aa12.7□□□□□ -0.38
SYNPO-204ENST00000519664 RASA1P20936 1047 aa12.7□□□□□ -0.38
SYNPO-204ENST00000519664 NTRK3Q16288 839 aa12.7□□□□□ -0.38
SYNPO-204ENST00000519664 MCF2L2Q86YR7 1114 aa12.7□□□□□ -0.38
SYNPO-204ENST00000519664 ZNF526Q8TF50 670 aaPredicted RBP12.7□□□□□ -0.38
SYNPO-204ENST00000519664 TRIM7Q9C029 511 aa12.7□□□□□ -0.38
SYNPO-204ENST00000519664 IVNS1ABPQ9Y6Y0 642 aa12.7□□□□□ -0.38
SYNPO-204ENST00000519664 KDM6AO15550 1401 aaPredicted RBP12.7□□□□□ -0.38
SYNPO-204ENST00000519664 GOLGA8SH3BPF8 625 aa12.7□□□□□ -0.38
SYNPO-204ENST00000519664 hCG_1984214I3L0E3 225 aa12.7□□□□□ -0.38
SYNPO-204ENST00000519664 ATP5DP30049 168 aa12.7□□□□□ -0.38
SYNPO-204ENST00000519664 ZNF394Q53GI3 561 aa12.7□□□□□ -0.38
SYNPO-204ENST00000519664 EARS2Q5JPH6 523 aaKnown RBP12.7□□□□□ -0.38
SYNPO-204ENST00000519664 ZNF713Q8N859 430 aaPredicted RBP12.7□□□□□ -0.38
SYNPO-204ENST00000519664 ZNF512BQ96KM6 892 aaPredicted RBP12.7□□□□□ -0.38
SYNPO-204ENST00000519664 PPLO60437 1756 aa12.7□□□□□ -0.38
SYNPO-204ENST00000519664 CNTNAP5Q8WYK1 1306 aa12.7□□□□□ -0.38
SYNPO-204ENST00000519664 PVALEFA0A1B0GWK0 134 aa12.69□□□□□ -0.38
SYNPO-204ENST00000519664 MYMKA6NI61 221 aa12.69□□□□□ -0.38
SYNPO-204ENST00000519664 CD58P19256 250 aa12.69□□□□□ -0.38
SYNPO-204ENST00000519664 GKAP1Q5VSY0 366 aaPredicted RBP12.69□□□□□ -0.38
SYNPO-204ENST00000519664 AP1ARQ63HQ0 302 aa12.69□□□□□ -0.38
SYNPO-204ENST00000519664 GUF1Q8N442 669 aaKnown RBP12.69□□□□□ -0.38
SYNPO-204ENST00000519664 NOA1Q8NC60 698 aaKnown RBP12.69□□□□□ -0.38
SYNPO-204ENST00000519664 DYDC2Q96IM9 177 aa12.69□□□□□ -0.38
SYNPO-204ENST00000519664 MTMR4Q9NYA4 1195 aa12.69□□□□□ -0.38
SYNPO-204ENST00000519664 FEZ2Q9UHY8 353 aaPredicted RBP12.69□□□□□ -0.38
SYNPO-204ENST00000519664 TMEM131LA2VDJ0 1609 aa12.69□□□□□ -0.38
SYNPO-204ENST00000519664 VWDEQ8N2E2 1590 aa12.69□□□□□ -0.38
SYNPO-204ENST00000519664 CLTAP09496 248 aa12.69□□□□□ -0.38
SYNPO-204ENST00000519664 GAP43P17677 238 aa12.69□□□□□ -0.38
SYNPO-204ENST00000519664 MMS22LQ6ZRQ5 1243 aa12.69□□□□□ -0.38
SYNPO-204ENST00000519664 NYAP1Q6ZVC0 841 aa12.69□□□□□ -0.38
SYNPO-204ENST00000519664 TBC1D16Q8TBP0 767 aa12.69□□□□□ -0.38
SYNPO-204ENST00000519664 MS4A14Q96JA4 679 aa12.69□□□□□ -0.38
SYNPO-204ENST00000519664 OSBPL9Q96SU4 736 aa12.69□□□□□ -0.38
SYNPO-204ENST00000519664 SNX24Q9Y343 169 aa12.69□□□□□ -0.38
SYNPO-204ENST00000519664 PCDHB4Q9Y5E5 795 aa12.69□□□□□ -0.38
SYNPO-204ENST00000519664 INO80B-WBP1J3KQ70 363 aa12.69□□□□□ -0.38
SYNPO-204ENST00000519664 MAPK4P31152 587 aa12.69□□□□□ -0.38
SYNPO-204ENST00000519664 CYP2C19P33261 490 aa12.69□□□□□ -0.38
SYNPO-204ENST00000519664 PRR5LQ6MZQ0 368 aa12.69□□□□□ -0.38
SYNPO-204ENST00000519664 INTS5Q6P9B9 1019 aaKnown RBP12.69□□□□□ -0.38
SYNPO-204ENST00000519664 RASGRP2Q7LDG7 609 aa12.69□□□□□ -0.38
SYNPO-204ENST00000519664 APBB1IPQ7Z5R6 666 aaPredicted RBP12.69□□□□□ -0.38
SYNPO-204ENST00000519664 FBXO33Q7Z6M2 555 aa12.69□□□□□ -0.38
SYNPO-204ENST00000519664 ZNF668Q96K58 619 aaPredicted RBP12.69□□□□□ -0.38
SYNPO-204ENST00000519664 INO80BQ9C086 356 aaPredicted RBP12.69□□□□□ -0.38
SYNPO-204ENST00000519664 GOLPH3Q9H4A6 298 aa12.69□□□□□ -0.38
SYNPO-204ENST00000519664 NXF1Q9UBU9 619 aaKnown RBP12.69□□□□□ -0.38
SYNPO-204ENST00000519664 DIP2BQ9P265 1576 aa12.69□□□□□ -0.38
SYNPO-204ENST00000519664 FLT1P17948 1338 aa12.69□□□□□ -0.38
SYNPO-204ENST00000519664 KIF1CO43896 1103 aaKnown RBP12.69□□□□□ -0.38
SYNPO-204ENST00000519664 CTNND1O60716 968 aaKnown RBP12.69□□□□□ -0.38
SYNPO-204ENST00000519664 PIK3CAP42336 1068 aa12.69□□□□□ -0.38
SYNPO-204ENST00000519664 DYNLT1P63172 113 aa12.69□□□□□ -0.38
SYNPO-204ENST00000519664 LACTBP83111 547 aaPredicted RBP12.69□□□□□ -0.38
SYNPO-204ENST00000519664 MKRN4PQ13434 485 aaPredicted RBP12.69□□□□□ -0.38
SYNPO-204ENST00000519664 GADL1Q6ZQY3 521 aa12.69□□□□□ -0.38
SYNPO-204ENST00000519664 FLAD1Q8NFF5 587 aa12.69□□□□□ -0.38
SYNPO-204ENST00000519664 MAP3K14Q99558 947 aa12.69□□□□□ -0.38
SYNPO-204ENST00000519664 CCSER1Q9C0I3 900 aa12.69□□□□□ -0.38
SYNPO-204ENST00000519664 ARHGEF28Q8N1W1 1705 aaKnown RBP12.68□□□□□ -0.38
SYNPO-204ENST00000519664 PPFIA4O75335 1185 aa12.68□□□□□ -0.38
SYNPO-204ENST00000519664 TMEM191BP0C7N4 346 aa12.68□□□□□ -0.38
SYNPO-204ENST00000519664 ACTN1P12814 892 aa12.68□□□□□ -0.38
SYNPO-204ENST00000519664 HSPA1LP34931 641 aa12.68□□□□□ -0.38
SYNPO-204ENST00000519664 MFAP3P55082 362 aa12.68□□□□□ -0.38
SYNPO-204ENST00000519664 C3orf67Q6ZVT6 689 aa12.68□□□□□ -0.38
SYNPO-204ENST00000519664 GLYCTKQ8IVS8 523 aa12.68□□□□□ -0.38
SYNPO-204ENST00000519664 YY1AP1Q9H869 796 aa12.68□□□□□ -0.38
SYNPO-204ENST00000519664 SDAD1Q9NVU7 687 aaKnown RBP eCLIP12.68□□□□□ -0.38
SYNPO-204ENST00000519664 DAPK3O43293 454 aa12.68□□□□□ -0.38
SYNPO-204ENST00000519664 N4BP1O75113 896 aaKnown RBP12.68□□□□□ -0.38
SYNPO-204ENST00000519664 NMT1P30419 496 aaKnown RBP12.68□□□□□ -0.38
SYNPO-204ENST00000519664 PPP2R5AQ15172 486 aa12.68□□□□□ -0.38
SYNPO-204ENST00000519664 ARHGEF2Q92974 986 aaKnown RBP12.68□□□□□ -0.38
SYNPO-204ENST00000519664 ACCSQ96QU6 501 aa12.68□□□□□ -0.38
SYNPO-204ENST00000519664 HOMER3Q9NSC5 361 aa12.68□□□□□ -0.38
SYNPO-204ENST00000519664 INTS9Q9NV88 658 aaKnown RBP12.68□□□□□ -0.38
SYNPO-204ENST00000519664 GEMIN8Q9NWZ8 242 aaKnown RBP12.68□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms