RNA–Protein interactions for RNA: ENST00000515460.5

NUP54-218, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 849 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-218ENST00000515460 PIEZO1Q92508 2521 aa6.93□□□□□ -1.3
NUP54-218ENST00000515460 OTOL1A6NHN0 477 aaPredicted RBP6.93□□□□□ -1.3
NUP54-218ENST00000515460 IRS4O14654 1257 aaPredicted RBP6.93□□□□□ -1.3
NUP54-218ENST00000515460 HSP90AA1P07900 732 aaKnown RBP6.93□□□□□ -1.3
NUP54-218ENST00000515460 SOX9P48436 509 aa6.93□□□□□ -1.3
NUP54-218ENST00000515460 HDLBPQ00341 1268 aaKnown RBP6.93□□□□□ -1.3
NUP54-218ENST00000515460 NFIXQ14938 502 aa6.93□□□□□ -1.3
NUP54-218ENST00000515460 ANKRD39Q53RE8 183 aa6.93□□□□□ -1.3
NUP54-218ENST00000515460 NOL9Q5SY16 702 aaKnown RBP6.93□□□□□ -1.3
NUP54-218ENST00000515460 UNC5AQ6ZN44 842 aa6.93□□□□□ -1.3
NUP54-218ENST00000515460 NME9Q86XW9 330 aa6.93□□□□□ -1.3
NUP54-218ENST00000515460 IGDCC3Q8IVU1 814 aa6.93□□□□□ -1.3
NUP54-218ENST00000515460 ANP32BQ92688 251 aaKnown RBP6.93□□□□□ -1.3
NUP54-218ENST00000515460 XYLT2Q9H1B5 865 aa6.93□□□□□ -1.3
NUP54-218ENST00000515460 SLC12A5Q9H2X9 1139 aa6.93□□□□□ -1.3
NUP54-218ENST00000515460 ACSL6Q9UKU0 697 aa6.93□□□□□ -1.3
NUP54-218ENST00000515460 THSD7BQ9C0I4 1608 aa6.93□□□□□ -1.3
NUP54-218ENST00000515460 KTN1Q86UP2 1357 aaKnown RBP6.93□□□□□ -1.3
NUP54-218ENST00000515460 LAMA2P24043 3122 aaKnown RBP6.92□□□□□ -1.3
NUP54-218ENST00000515460 TMEM62Q0P6H9 643 aa6.92□□□□□ -1.3
NUP54-218ENST00000515460 RTP2Q5QGT7 225 aa6.92□□□□□ -1.3
NUP54-218ENST00000515460 DCAF15Q66K64 600 aa6.92□□□□□ -1.3
NUP54-218ENST00000515460 RPTNQ6XPR3 784 aa6.92□□□□□ -1.3
NUP54-218ENST00000515460 CCDC81Q6ZN84 652 aa6.92□□□□□ -1.3
NUP54-218ENST00000515460 FAM129CQ86XR2 697 aa6.92□□□□□ -1.3
NUP54-218ENST00000515460 TICAM2Q86XR7 235 aa6.92□□□□□ -1.3
NUP54-218ENST00000515460 JAMLQ86YT9 394 aa6.92□□□□□ -1.3
NUP54-218ENST00000515460 SYT8Q8NBV8 401 aa6.92□□□□□ -1.3
NUP54-218ENST00000515460 BRF1Q92994 677 aa6.92□□□□□ -1.3
NUP54-218ENST00000515460 PWWP2AQ96N64 755 aa6.92□□□□□ -1.3
NUP54-218ENST00000515460 ITSN1Q15811 1721 aa6.92□□□□□ -1.3
NUP54-218ENST00000515460 ROCK2O75116 1388 aaKnown RBP6.92□□□□□ -1.3
NUP54-218ENST00000515460 CCDC7Q96M83 1385 aa6.92□□□□□ -1.3
NUP54-218ENST00000515460 COL18A1P39060 1754 aa6.92□□□□□ -1.3
NUP54-218ENST00000515460 H0Y8X5 98 aa6.91□□□□□ -1.3
NUP54-218ENST00000515460 SHOXO15266 292 aa6.91□□□□□ -1.3
NUP54-218ENST00000515460 BUB1BO60566 1050 aaPredicted RBP6.91□□□□□ -1.3
NUP54-218ENST00000515460 CLSTN1O94985 981 aa6.91□□□□□ -1.3
NUP54-218ENST00000515460 TP53P04637 393 aaPredicted RBP6.91□□□□□ -1.3
NUP54-218ENST00000515460 ITGA4P13612 1032 aa6.91□□□□□ -1.3
NUP54-218ENST00000515460 IL2RBP14784 551 aa6.91□□□□□ -1.3
NUP54-218ENST00000515460 SYN1P17600 705 aa6.91□□□□□ -1.3
NUP54-218ENST00000515460 GJA8P48165 433 aa6.91□□□□□ -1.3
NUP54-218ENST00000515460 TCEAL1Q15170 157 aa6.91□□□□□ -1.3
NUP54-218ENST00000515460 RUFY4Q6ZNE9 571 aa6.91□□□□□ -1.3
NUP54-218ENST00000515460 PPFIBP1Q86W92 1011 aa6.91□□□□□ -1.3
NUP54-218ENST00000515460 C19orf47Q8N9M1 422 aaKnown RBP6.91□□□□□ -1.3
NUP54-218ENST00000515460 RGS22Q8NE09 1264 aa6.91□□□□□ -1.3
NUP54-218ENST00000515460 SLC12A9Q9BXP2 914 aa6.91□□□□□ -1.3
NUP54-218ENST00000515460 SRRTQ9BXP5 876 aaKnown RBP6.91□□□□□ -1.3
NUP54-218ENST00000515460 TGIF2Q9GZN2 237 aa6.91□□□□□ -1.3
NUP54-218ENST00000515460 PHAXQ9H814 394 aaKnown RBP6.91□□□□□ -1.3
NUP54-218ENST00000515460 GP6Q9HCN6 339 aa6.91□□□□□ -1.3
NUP54-218ENST00000515460 TNFRSF12AQ9NP84 129 aa6.91□□□□□ -1.3
NUP54-218ENST00000515460 KIAA1522Q9P206 1035 aaPredicted RBP6.91□□□□□ -1.3
NUP54-218ENST00000515460 PRDM4Q9UKN5 801 aa6.91□□□□□ -1.3
NUP54-218ENST00000515460 ZNF214Q9UL59 606 aaPredicted RBP6.91□□□□□ -1.3
NUP54-218ENST00000515460 SF3B6Q9Y3B4 125 aaKnown RBP6.91□□□□□ -1.3
NUP54-218ENST00000515460 PCDHA5Q9Y5H7 936 aa6.91□□□□□ -1.3
NUP54-218ENST00000515460 SBNO2Q9Y2G9 1366 aa6.91□□□□□ -1.3
NUP54-218ENST00000515460 PIK3C2AO00443 1686 aa6.9□□□□□ -1.3
NUP54-218ENST00000515460 QRICH2Q9H0J4 1663 aa6.9□□□□□ -1.3
NUP54-218ENST00000515460 A0A1W2PQJ5 194 aa6.9□□□□□ -1.3
NUP54-218ENST00000515460 MSL3P1P0C860 447 aa6.9□□□□□ -1.3
NUP54-218ENST00000515460 CD247P20963 164 aa6.9□□□□□ -1.3
NUP54-218ENST00000515460 FBLN1P23142 703 aa6.9□□□□□ -1.3
NUP54-218ENST00000515460 NOP2P46087 812 aaKnown RBP6.9□□□□□ -1.3
NUP54-218ENST00000515460 MVKQ03426 396 aa6.9□□□□□ -1.3
NUP54-218ENST00000515460 ZYXQ15942 572 aaKnown RBP6.9□□□□□ -1.3
NUP54-218ENST00000515460 AXDND1Q5T1B0 1012 aaPredicted RBP6.9□□□□□ -1.3
NUP54-218ENST00000515460 HLA-DQA1Q5Y7H0 255 aa6.9□□□□□ -1.3
NUP54-218ENST00000515460 CPLX3Q8WVH0 158 aa6.9□□□□□ -1.3
NUP54-218ENST00000515460 IP6K1Q92551 441 aa6.9□□□□□ -1.3
NUP54-218ENST00000515460 CHMP4BQ9H444 224 aaKnown RBP6.9□□□□□ -1.3
NUP54-218ENST00000515460 CCSER2Q9H7U1 834 aa6.9□□□□□ -1.3
NUP54-218ENST00000515460 FHOD1Q9Y613 1164 aa6.9□□□□□ -1.3
NUP54-218ENST00000515460 CD163L1Q9NR16 1453 aa6.9□□□□□ -1.31
NUP54-218ENST00000515460 BAHCC1Q9P281 2608 aa6.9□□□□□ -1.31
NUP54-218ENST00000515460 EYSQ5T1H1 3165 aa6.89□□□□□ -1.31
NUP54-218ENST00000515460 CENPFP49454 3210 aa6.89□□□□□ -1.31
NUP54-218ENST00000515460 H0YGN5 161 aa6.89□□□□□ -1.31
NUP54-218ENST00000515460 PTMAP06454 111 aaKnown RBP6.89□□□□□ -1.31
NUP54-218ENST00000515460 KCNA3P22001 575 aa6.89□□□□□ -1.31
NUP54-218ENST00000515460 GIPRP48546 466 aa6.89□□□□□ -1.31
NUP54-218ENST00000515460 ZNF445P59923 1031 aa6.89□□□□□ -1.31
NUP54-218ENST00000515460 ZNF200P98182 395 aaPredicted RBP6.89□□□□□ -1.31
NUP54-218ENST00000515460 CBX2Q14781 532 aaPredicted RBP6.89□□□□□ -1.31
NUP54-218ENST00000515460 PLEKHN1Q494U1 663 aaPredicted RBP6.89□□□□□ -1.31
NUP54-218ENST00000515460 HDGFL2Q7Z4V5 671 aaPredicted RBP6.89□□□□□ -1.31
NUP54-218ENST00000515460 POLR3GLQ9BT43 218 aa6.89□□□□□ -1.31
NUP54-218ENST00000515460 CARD11Q9BXL7 1154 aa6.89□□□□□ -1.31
NUP54-218ENST00000515460 KRTAP9-3Q9BYQ3 159 aa6.89□□□□□ -1.31
NUP54-218ENST00000515460 RTEL1Q9NZ71 1219 aa6.89□□□□□ -1.31
NUP54-218ENST00000515460 STRIP2Q9ULQ0 834 aa6.89□□□□□ -1.31
NUP54-218ENST00000515460 INPP5FQ9Y2H2 1132 aa6.89□□□□□ -1.31
NUP54-218ENST00000515460 NFAT5O94916 1531 aa6.89□□□□□ -1.31
NUP54-218ENST00000515460 TRPM1Q7Z4N2 1603 aa6.89□□□□□ -1.31
NUP54-218ENST00000515460 UNCXA6NJT0 531 aa6.88□□□□□ -1.31
NUP54-218ENST00000515460 CA12O43570 354 aa6.88□□□□□ -1.31
NUP54-218ENST00000515460 LIMS1P48059 325 aa6.88□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms