RNA–Protein interactions for RNA: ENST00000514665.1

USP53-209, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,233 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-209ENST00000514665 ARHGAP4P98171 946 aa13.73□□□□□ -0.21
USP53-209ENST00000514665 ALS2CLQ60I27 953 aa13.73□□□□□ -0.21
USP53-209ENST00000514665 DCAF15Q66K64 600 aa13.73□□□□□ -0.21
USP53-209ENST00000514665 FLAD1Q8NFF5 587 aa13.73□□□□□ -0.21
USP53-209ENST00000514665 NEK9Q8TD19 979 aa13.73□□□□□ -0.21
USP53-209ENST00000514665 COA1Q9GZY4 146 aa13.73□□□□□ -0.21
USP53-209ENST00000514665 PCDHA6Q9UN73 950 aa13.73□□□□□ -0.21
USP53-209ENST00000514665 NOD1Q9Y239 953 aa13.73□□□□□ -0.21
USP53-209ENST00000514665 PCDHA8Q9Y5H6 950 aa13.73□□□□□ -0.21
USP53-209ENST00000514665 CSADQ9Y600 493 aa13.73□□□□□ -0.21
USP53-209ENST00000514665 H0YCG3 227 aa13.73□□□□□ -0.21
USP53-209ENST00000514665 H7C0C1 242 aa13.73□□□□□ -0.21
USP53-209ENST00000514665 SUN1O94901 812 aa13.73□□□□□ -0.21
USP53-209ENST00000514665 MMP10P09238 476 aa13.73□□□□□ -0.21
USP53-209ENST00000514665 ATP5OP48047 213 aa13.73□□□□□ -0.21
USP53-209ENST00000514665 SESN3P58005 492 aa13.73□□□□□ -0.21
USP53-209ENST00000514665 MTERF2Q49AM1 385 aa13.73□□□□□ -0.21
USP53-209ENST00000514665 TRIM68Q6AZZ1 485 aa13.73□□□□□ -0.21
USP53-209ENST00000514665 RAD9BQ6WBX8 426 aa13.73□□□□□ -0.21
USP53-209ENST00000514665 EEPD1Q7L9B9 569 aa13.73□□□□□ -0.21
USP53-209ENST00000514665 SPATA24Q86W54 205 aa13.73□□□□□ -0.21
USP53-209ENST00000514665 CLEC10AQ8IUN9 316 aa13.73□□□□□ -0.21
USP53-209ENST00000514665 RNF10Q8N5U6 811 aaKnown RBP13.73□□□□□ -0.21
USP53-209ENST00000514665 NSUN4Q96CB9 384 aaKnown RBP13.73□□□□□ -0.21
USP53-209ENST00000514665 AS3MTQ9HBK9 375 aa13.73□□□□□ -0.21
USP53-209ENST00000514665 NXF1Q9UBU9 619 aaKnown RBP13.73□□□□□ -0.21
USP53-209ENST00000514665 PPRC1Q5VV67 1664 aaKnown RBP13.73□□□□□ -0.21
USP53-209ENST00000514665 UTYO14607 1347 aa13.73□□□□□ -0.21
USP53-209ENST00000514665 A0A087WUV0 522 aaPredicted RBP13.73□□□□□ -0.21
USP53-209ENST00000514665 ANO9A1A5B4 782 aa13.73□□□□□ -0.21
USP53-209ENST00000514665 SGK1O00141 431 aa13.73□□□□□ -0.21
USP53-209ENST00000514665 NR3C1P04150 777 aa13.73□□□□□ -0.21
USP53-209ENST00000514665 P4HA1P13674 534 aa13.73□□□□□ -0.21
USP53-209ENST00000514665 PHBP35232 272 aa13.73□□□□□ -0.21
USP53-209ENST00000514665 RASSF2P50749 326 aa13.73□□□□□ -0.21
USP53-209ENST00000514665 DR1Q01658 176 aa13.73□□□□□ -0.21
USP53-209ENST00000514665 ARHGAP24Q8N264 748 aa13.73□□□□□ -0.21
USP53-209ENST00000514665 RAD54LQ92698 747 aa13.73□□□□□ -0.21
USP53-209ENST00000514665 TRIM9Q9C026 710 aa13.73□□□□□ -0.21
USP53-209ENST00000514665 DDX47Q9H0S4 455 aaKnown RBP13.73□□□□□ -0.21
USP53-209ENST00000514665 TMEM206Q9H813 350 aa13.73□□□□□ -0.21
USP53-209ENST00000514665 HPS5Q9UPZ3 1129 aa13.73□□□□□ -0.21
USP53-209ENST00000514665 SYNJ2BP-COX16A0A087WUM0 186 aa13.72□□□□□ -0.21
USP53-209ENST00000514665 A0A1B0GTH6 734 aa13.72□□□□□ -0.21
USP53-209ENST00000514665 MYO1CO00159 1063 aa13.72□□□□□ -0.21
USP53-209ENST00000514665 ORC4O43929 436 aa13.72□□□□□ -0.21
USP53-209ENST00000514665 CSF1RP07333 972 aa13.72□□□□□ -0.21
USP53-209ENST00000514665 GCLMP48507 274 aa13.72□□□□□ -0.21
USP53-209ENST00000514665 TFAMQ00059 246 aaKnown RBP13.72□□□□□ -0.21
USP53-209ENST00000514665 E2F4Q16254 413 aa13.72□□□□□ -0.21
USP53-209ENST00000514665 TMC4Q7Z404 712 aa13.72□□□□□ -0.21
USP53-209ENST00000514665 FOXP4Q8IVH2 680 aaPredicted RBP13.72□□□□□ -0.21
USP53-209ENST00000514665 LRRC8CQ8TDW0 803 aa13.72□□□□□ -0.21
USP53-209ENST00000514665 OSBPL9Q96SU4 736 aa13.72□□□□□ -0.21
USP53-209ENST00000514665 COX16Q9P0S2 106 aa13.72□□□□□ -0.21
USP53-209ENST00000514665 CEP72Q9P209 647 aa13.72□□□□□ -0.21
USP53-209ENST00000514665 BAZ2BQ9UIF8 2168 aaKnown RBP13.72□□□□□ -0.21
USP53-209ENST00000514665 ACSL3O95573 720 aa13.72□□□□□ -0.21
USP53-209ENST00000514665 CD58P19256 250 aa13.72□□□□□ -0.21
USP53-209ENST00000514665 TAF12Q16514 161 aa13.72□□□□□ -0.21
USP53-209ENST00000514665 QRICH1Q2TAL8 776 aa13.72□□□□□ -0.21
USP53-209ENST00000514665 PPP4R3CPQ6ZMV5 832 aa13.72□□□□□ -0.21
USP53-209ENST00000514665 GUF1Q8N442 669 aaKnown RBP13.72□□□□□ -0.21
USP53-209ENST00000514665 TC2NQ8N9U0 490 aa13.72□□□□□ -0.21
USP53-209ENST00000514665 ARHGEF1Q92888 912 aaKnown RBP13.72□□□□□ -0.21
USP53-209ENST00000514665 HESX1Q9UBX0 185 aa13.72□□□□□ -0.21
USP53-209ENST00000514665 TRIM10Q9UDY6 481 aa13.72□□□□□ -0.21
USP53-209ENST00000514665 ADD3Q9UEY8 706 aaKnown RBP13.72□□□□□ -0.21
USP53-209ENST00000514665 OSTNP61366 133 aa13.72□□□□□ -0.21
USP53-209ENST00000514665 BRDTQ58F21 947 aaPredicted RBP13.72□□□□□ -0.21
USP53-209ENST00000514665 C12orf60Q5U649 245 aa13.72□□□□□ -0.21
USP53-209ENST00000514665 EFCAB13Q8IY85 973 aa13.72□□□□□ -0.21
USP53-209ENST00000514665 RNF169Q8NCN4 708 aa13.72□□□□□ -0.21
USP53-209ENST00000514665 ANAPC5Q9UJX4 755 aa13.72□□□□□ -0.21
USP53-209ENST00000514665 PLAAQ9Y263 795 aa13.72□□□□□ -0.21
USP53-209ENST00000514665 RASGRF2O14827 1237 aa13.72□□□□□ -0.21
USP53-209ENST00000514665 AKR1B1P15121 316 aa13.72□□□□□ -0.21
USP53-209ENST00000514665 ZNF211Q13398 564 aaPredicted RBP13.72□□□□□ -0.21
USP53-209ENST00000514665 C10orf76Q5T2E6 689 aa13.72□□□□□ -0.21
USP53-209ENST00000514665 SEPT14Q6ZU15 432 aa13.72□□□□□ -0.21
USP53-209ENST00000514665 TMEM179Q6ZVK1 233 aa13.72□□□□□ -0.21
USP53-209ENST00000514665 NEDD1Q8NHV4 660 aa13.72□□□□□ -0.21
USP53-209ENST00000514665 ATP2A3Q93084 1043 aa13.72□□□□□ -0.21
USP53-209ENST00000514665 NRBP2Q9NSY0 501 aa13.72□□□□□ -0.21
USP53-209ENST00000514665 AGPAT5Q9NUQ2 364 aa13.72□□□□□ -0.21
USP53-209ENST00000514665 MRPS9P82933 396 aaKnown RBP13.71□□□□□ -0.21
USP53-209ENST00000514665 STK4Q13043 487 aa13.71□□□□□ -0.21
USP53-209ENST00000514665 ZNF746Q6NUN9 644 aaPredicted RBP13.71□□□□□ -0.21
USP53-209ENST00000514665 GADL1Q6ZQY3 521 aa13.71□□□□□ -0.21
USP53-209ENST00000514665 FRMD4AQ9P2Q2 1039 aaPredicted RBP13.71□□□□□ -0.21
USP53-209ENST00000514665 CEMIPQ8WUJ3 1361 aa13.71□□□□□ -0.21
USP53-209ENST00000514665 ARHGAP42A6NI28 874 aa13.71□□□□□ -0.21
USP53-209ENST00000514665 AP5Z1O43299 807 aa13.71□□□□□ -0.21
USP53-209ENST00000514665 RPSAP08865 295 aaKnown RBP13.71□□□□□ -0.21
USP53-209ENST00000514665 FAM133BQ5BKY9 247 aaKnown RBP13.71□□□□□ -0.21
USP53-209ENST00000514665 PHF20Q9BVI0 1012 aa13.71□□□□□ -0.21
USP53-209ENST00000514665 EIF3CLB5ME19 914 aaKnown RBP13.71□□□□□ -0.22
USP53-209ENST00000514665 ZNF185O15231 689 aa13.71□□□□□ -0.22
USP53-209ENST00000514665 USP14P54578 494 aa13.71□□□□□ -0.22
USP53-209ENST00000514665 PROM2Q8N271 834 aa13.71□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms