RNA–Protein interactions for RNA: ENST00000512946.5

LIMCH1-217, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,057 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-217ENST00000512946 LZTS3O60299 673 aaPredicted RBP12.03□□□□□ -0.48
LIMCH1-217ENST00000512946 SLCO1A2P46721 670 aa12.03□□□□□ -0.48
LIMCH1-217ENST00000512946 CAPRIN1Q14444 709 aaKnown RBP12.03□□□□□ -0.48
LIMCH1-217ENST00000512946 KHDRBS2Q5VWX1 349 aaKnown RBP12.03□□□□□ -0.48
LIMCH1-217ENST00000512946 DNAAF3Q8N9W5 541 aa12.03□□□□□ -0.48
LIMCH1-217ENST00000512946 C8orf58Q8NAV2 365 aa12.03□□□□□ -0.48
LIMCH1-217ENST00000512946 PROCA1Q8NCQ7 364 aaPredicted RBP12.03□□□□□ -0.48
LIMCH1-217ENST00000512946 TGS1Q96RS0 853 aaKnown RBP12.03□□□□□ -0.48
LIMCH1-217ENST00000512946 CCDC87Q9NVE4 849 aa12.03□□□□□ -0.48
LIMCH1-217ENST00000512946 FGD5Q6ZNL6 1462 aa12.02□□□□□ -0.48
LIMCH1-217ENST00000512946 H7C0S8 307 aa12.02□□□□□ -0.48
LIMCH1-217ENST00000512946 TJP3O95049 919 aa12.02□□□□□ -0.48
LIMCH1-217ENST00000512946 FOSP01100 380 aaPredicted RBP12.02□□□□□ -0.48
LIMCH1-217ENST00000512946 VHLP40337 213 aa12.02□□□□□ -0.48
LIMCH1-217ENST00000512946 MAGOHP61326 146 aaKnown RBP12.02□□□□□ -0.48
LIMCH1-217ENST00000512946 ALCAMQ13740 583 aa12.02□□□□□ -0.48
LIMCH1-217ENST00000512946 TFDP2Q14188 446 aa12.02□□□□□ -0.48
LIMCH1-217ENST00000512946 TBCCQ15814 346 aa12.02□□□□□ -0.48
LIMCH1-217ENST00000512946 ME3Q16798 604 aa12.02□□□□□ -0.48
LIMCH1-217ENST00000512946 PPP6R3Q5H9R7 873 aaPredicted RBP12.02□□□□□ -0.48
LIMCH1-217ENST00000512946 AFAP1Q8N556 730 aa12.02□□□□□ -0.48
LIMCH1-217ENST00000512946 KCNV2Q8TDN2 545 aa12.02□□□□□ -0.48
LIMCH1-217ENST00000512946 SGSM3Q96HU1 749 aa12.02□□□□□ -0.48
LIMCH1-217ENST00000512946 OSBPL5Q9H0X9 879 aaPredicted RBP12.02□□□□□ -0.48
LIMCH1-217ENST00000512946 NHEJ1Q9H9Q4 299 aaPredicted RBP12.02□□□□□ -0.48
LIMCH1-217ENST00000512946 FANCEQ9HB96 536 aa12.02□□□□□ -0.48
LIMCH1-217ENST00000512946 RWDD3Q9Y3V2 267 aa12.02□□□□□ -0.48
LIMCH1-217ENST00000512946 GMEB1Q9Y692 573 aa12.02□□□□□ -0.48
LIMCH1-217ENST00000512946 SUPT6HQ7KZ85 1726 aaKnown RBP12.02□□□□□ -0.48
LIMCH1-217ENST00000512946 EIF3HO15372 352 aaKnown RBP eCLIP12.02□□□□□ -0.49
LIMCH1-217ENST00000512946 SRGAP2CP0DJJ0 459 aa12.02□□□□□ -0.49
LIMCH1-217ENST00000512946 CDC27P30260 824 aa12.02□□□□□ -0.49
LIMCH1-217ENST00000512946 CHRNA3P32297 505 aa12.02□□□□□ -0.49
LIMCH1-217ENST00000512946 COPS2P61201 443 aa12.02□□□□□ -0.49
LIMCH1-217ENST00000512946 STAT4Q14765 748 aa12.02□□□□□ -0.49
LIMCH1-217ENST00000512946 PUM3Q15397 648 aaKnown RBP12.02□□□□□ -0.49
LIMCH1-217ENST00000512946 CYTH1Q15438 398 aa12.02□□□□□ -0.49
LIMCH1-217ENST00000512946 FOXP3Q9BZS1 431 aa12.02□□□□□ -0.49
LIMCH1-217ENST00000512946 TAF1DQ9H5J8 278 aaPredicted RBP12.02□□□□□ -0.49
LIMCH1-217ENST00000512946 SCN3BQ9NY72 215 aa12.02□□□□□ -0.49
LIMCH1-217ENST00000512946 ZKSCAN7Q9P0L1 754 aaPredicted RBP12.02□□□□□ -0.49
LIMCH1-217ENST00000512946 KRT14P02533 472 aa12.02□□□□□ -0.49
LIMCH1-217ENST00000512946 BRAFP15056 766 aa12.02□□□□□ -0.49
LIMCH1-217ENST00000512946 CCNE1P24864 410 aa12.02□□□□□ -0.49
LIMCH1-217ENST00000512946 LIG4P49917 911 aa12.02□□□□□ -0.49
LIMCH1-217ENST00000512946 PMS2P54278 862 aa12.02□□□□□ -0.49
LIMCH1-217ENST00000512946 USP14P54578 494 aa12.02□□□□□ -0.49
LIMCH1-217ENST00000512946 TRIM71Q2Q1W2 868 aaKnown RBP12.02□□□□□ -0.49
LIMCH1-217ENST00000512946 DEPDC1Q5TB30 811 aa12.02□□□□□ -0.49
LIMCH1-217ENST00000512946 ADAT2Q7Z6V5 191 aaKnown RBP12.02□□□□□ -0.49
LIMCH1-217ENST00000512946 ARAP1Q96P48 1450 aa12.02□□□□□ -0.49
LIMCH1-217ENST00000512946 TBC1D4O60343 1298 aa12.02□□□□□ -0.49
LIMCH1-217ENST00000512946 TOMM70O94826 608 aa12.02□□□□□ -0.49
LIMCH1-217ENST00000512946 KRT1P04264 644 aa12.02□□□□□ -0.49
LIMCH1-217ENST00000512946 CA8P35219 290 aa12.02□□□□□ -0.49
LIMCH1-217ENST00000512946 MDH1P40925 334 aaKnown RBP12.02□□□□□ -0.49
LIMCH1-217ENST00000512946 LRRC63Q05C16 580 aa12.02□□□□□ -0.49
LIMCH1-217ENST00000512946 BBS9Q3SYG4 887 aa12.02□□□□□ -0.49
LIMCH1-217ENST00000512946 NR1H4Q96RI1 486 aaPredicted RBP12.02□□□□□ -0.49
LIMCH1-217ENST00000512946 BPIFA3Q9BQP9 254 aa12.02□□□□□ -0.49
LIMCH1-217ENST00000512946 MXD3Q9BW11 206 aa12.02□□□□□ -0.49
LIMCH1-217ENST00000512946 NSMCE4AQ9NXX6 385 aa12.02□□□□□ -0.49
LIMCH1-217ENST00000512946 PCDHA12Q9UN75 941 aa12.02□□□□□ -0.49
LIMCH1-217ENST00000512946 PHF8Q9UPP1 1060 aa12.02□□□□□ -0.49
LIMCH1-217ENST00000512946 DDAH1O94760 285 aa12.01□□□□□ -0.49
LIMCH1-217ENST00000512946 CPA1P15085 419 aa12.01□□□□□ -0.49
LIMCH1-217ENST00000512946 CYP2J2P51589 502 aa12.01□□□□□ -0.49
LIMCH1-217ENST00000512946 ARMCX5Q6P1M9 558 aa12.01□□□□□ -0.49
LIMCH1-217ENST00000512946 ANKRD13CQ8N6S4 541 aa12.01□□□□□ -0.49
LIMCH1-217ENST00000512946 ADPGKQ9BRR6 497 aa12.01□□□□□ -0.49
LIMCH1-217ENST00000512946 ARIH1Q9Y4X5 557 aaPredicted RBP12.01□□□□□ -0.49
LIMCH1-217ENST00000512946 MFAP3LO75121 409 aa12.01□□□□□ -0.49
LIMCH1-217ENST00000512946 KLHL2O95198 593 aa12.01□□□□□ -0.49
LIMCH1-217ENST00000512946 KRT6AP02538 564 aa12.01□□□□□ -0.49
LIMCH1-217ENST00000512946 KRT6BP04259 564 aa12.01□□□□□ -0.49
LIMCH1-217ENST00000512946 ATP5JP18859 108 aa12.01□□□□□ -0.49
LIMCH1-217ENST00000512946 KRT6CP48668 564 aa12.01□□□□□ -0.49
LIMCH1-217ENST00000512946 NDUFA8P51970 172 aa12.01□□□□□ -0.49
LIMCH1-217ENST00000512946 EPHB1P54762 984 aa12.01□□□□□ -0.49
LIMCH1-217ENST00000512946 CUL4AQ13619 759 aa12.01□□□□□ -0.49
LIMCH1-217ENST00000512946 DARS2Q6PI48 645 aaKnown RBP12.01□□□□□ -0.49
LIMCH1-217ENST00000512946 BTNL9Q6UXG8 535 aa12.01□□□□□ -0.49
LIMCH1-217ENST00000512946 HIPK4Q8NE63 616 aa12.01□□□□□ -0.49
LIMCH1-217ENST00000512946 TTC17Q96AE7 1141 aa12.01□□□□□ -0.49
LIMCH1-217ENST00000512946 OMA1Q96E52 524 aa12.01□□□□□ -0.49
LIMCH1-217ENST00000512946 TBK1Q9UHD2 729 aa12.01□□□□□ -0.49
LIMCH1-217ENST00000512946 HECW1Q76N89 1606 aa12.01□□□□□ -0.49
LIMCH1-217ENST00000512946 ARHGEF37A1IGU5 675 aa12.01□□□□□ -0.49
LIMCH1-217ENST00000512946 FAM83GA6ND36 823 aa12.01□□□□□ -0.49
LIMCH1-217ENST00000512946 RSPH10B2B2RC85 870 aa12.01□□□□□ -0.49
LIMCH1-217ENST00000512946 NBPF26B4DH59 902 aa12.01□□□□□ -0.49
LIMCH1-217ENST00000512946 GAS7O60861 476 aa12.01□□□□□ -0.49
LIMCH1-217ENST00000512946 SUPT3HO75486 399 aa12.01□□□□□ -0.49
LIMCH1-217ENST00000512946 ZMYND10O75800 440 aa12.01□□□□□ -0.49
LIMCH1-217ENST00000512946 RSPH10BP0C881 870 aa12.01□□□□□ -0.49
LIMCH1-217ENST00000512946 HSPA2P54652 639 aa12.01□□□□□ -0.49
LIMCH1-217ENST00000512946 DHX34Q14147 1143 aaKnown RBP12.01□□□□□ -0.49
LIMCH1-217ENST00000512946 TJAP1Q5JTD0 557 aa12.01□□□□□ -0.49
LIMCH1-217ENST00000512946 AGBL2Q5U5Z8 902 aa12.01□□□□□ -0.49
LIMCH1-217ENST00000512946 OLFML2BQ68BL8 750 aa12.01□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms