RNA–Protein interactions for RNA: ENST00000511859.5

RNF4-216, Transcript of ring finger protein 4, humanhuman

TSL 1 (best) BASIC

Gene RNF4, Length 1,373 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-216ENST00000511859 PLXNA4Q9HCM2 1894 aa13.42□□□□□ -0.26
RNF4-216ENST00000511859 PER2O15055 1255 aa13.42□□□□□ -0.26
RNF4-216ENST00000511859 PARP1P09874 1014 aaKnown RBP13.42□□□□□ -0.26
RNF4-216ENST00000511859 HAND2P61296 217 aa13.42□□□□□ -0.26
RNF4-216ENST00000511859 TRAF1Q13077 416 aa13.42□□□□□ -0.26
RNF4-216ENST00000511859 MCMDC2Q4G0Z9 681 aa13.42□□□□□ -0.26
RNF4-216ENST00000511859 FBXO47Q5MNV8 452 aa13.42□□□□□ -0.26
RNF4-216ENST00000511859 CYFIP1Q7L576 1253 aa13.42□□□□□ -0.26
RNF4-216ENST00000511859 NPAS4Q8IUM7 802 aa13.42□□□□□ -0.26
RNF4-216ENST00000511859 GPKOWQ92917 476 aaPredicted RBP eCLIP13.42□□□□□ -0.26
RNF4-216ENST00000511859 EVI5LQ96CN4 794 aa13.42□□□□□ -0.26
RNF4-216ENST00000511859 ZKSCAN3Q9BRR0 538 aa13.42□□□□□ -0.26
RNF4-216ENST00000511859 S1PR5Q9H228 398 aa13.42□□□□□ -0.26
RNF4-216ENST00000511859 NR2E1Q9Y466 385 aa13.42□□□□□ -0.26
RNF4-216ENST00000511859 PCDHB12Q9Y5F1 795 aa13.42□□□□□ -0.26
RNF4-216ENST00000511859 DOCK5Q9H7D0 1870 aa13.41□□□□□ -0.26
RNF4-216ENST00000511859 SPATA31C2B4DYI2 1134 aa13.41□□□□□ -0.26
RNF4-216ENST00000511859 HOXA13P31271 388 aaPredicted RBP13.41□□□□□ -0.26
RNF4-216ENST00000511859 MTMR3Q13615 1198 aa13.41□□□□□ -0.26
RNF4-216ENST00000511859 DUSP6Q16828 381 aa13.41□□□□□ -0.26
RNF4-216ENST00000511859 FAM43BQ6ZT52 329 aaPredicted RBP13.41□□□□□ -0.26
RNF4-216ENST00000511859 RTN4RL1Q86UN2 441 aaPredicted RBP13.41□□□□□ -0.26
RNF4-216ENST00000511859 ADSSL1Q8N142 457 aa13.41□□□□□ -0.26
RNF4-216ENST00000511859 KREMEN2Q8NCW0 462 aa13.41□□□□□ -0.26
RNF4-216ENST00000511859 IL31RAQ8NI17 732 aa13.41□□□□□ -0.26
RNF4-216ENST00000511859 AAASQ9NRG9 546 aa13.41□□□□□ -0.26
RNF4-216ENST00000511859 SORCS3Q9UPU3 1222 aa13.41□□□□□ -0.26
RNF4-216ENST00000511859 PCDHA1Q9Y5I3 950 aa13.41□□□□□ -0.26
RNF4-216ENST00000511859 LOXHD1Q8IVV2 1947 aa13.41□□□□□ -0.26
RNF4-216ENST00000511859 BAZ2BQ9UIF8 2168 aaKnown RBP13.4□□□□□ -0.26
RNF4-216ENST00000511859 TRIM6-TRIM34B2RNG4 842 aa13.4□□□□□ -0.26
RNF4-216ENST00000511859 GCOM1H8Y6P7 765 aaPredicted RBP13.4□□□□□ -0.26
RNF4-216ENST00000511859 PPFIA3O75145 1194 aa13.4□□□□□ -0.26
RNF4-216ENST00000511859 POLR2MP0CAP2 368 aa13.4□□□□□ -0.26
RNF4-216ENST00000511859 CLCN5P51795 746 aa13.4□□□□□ -0.26
RNF4-216ENST00000511859 UTP14CQ5TAP6 766 aaKnown RBP13.4□□□□□ -0.26
RNF4-216ENST00000511859 IER5Q5VY09 327 aa13.4□□□□□ -0.26
RNF4-216ENST00000511859 ASTLQ6HA08 431 aaPredicted RBP13.4□□□□□ -0.26
RNF4-216ENST00000511859 TMEM105Q8N8V8 129 aa13.4□□□□□ -0.26
RNF4-216ENST00000511859 RASGRP4Q8TDF6 673 aa13.4□□□□□ -0.26
RNF4-216ENST00000511859 ZFP91Q96JP5 570 aaPredicted RBP13.4□□□□□ -0.26
RNF4-216ENST00000511859 SENP7Q9BQF6 1050 aa13.4□□□□□ -0.26
RNF4-216ENST00000511859 CDY2AQ9Y6F7 541 aa13.4□□□□□ -0.26
RNF4-216ENST00000511859 EPG5Q9HCE0 2579 aa13.4□□□□□ -0.26
RNF4-216ENST00000511859 ZBTB5O15062 677 aa13.39□□□□□ -0.27
RNF4-216ENST00000511859 FIBPO43427 364 aa13.39□□□□□ -0.27
RNF4-216ENST00000511859 HOXB8P17481 243 aaPredicted RBP13.39□□□□□ -0.27
RNF4-216ENST00000511859 MX1P20591 662 aa13.39□□□□□ -0.27
RNF4-216ENST00000511859 CD52P31358 61 aa13.39□□□□□ -0.27
RNF4-216ENST00000511859 KCNC3Q14003 757 aa13.39□□□□□ -0.27
RNF4-216ENST00000511859 PAN2Q504Q3 1202 aaKnown RBP13.39□□□□□ -0.27
RNF4-216ENST00000511859 ANKRD54Q6NXT1 300 aa13.39□□□□□ -0.27
RNF4-216ENST00000511859 RUFY4Q6ZNE9 571 aa13.39□□□□□ -0.27
RNF4-216ENST00000511859 FRMD5Q7Z6J6 570 aa13.39□□□□□ -0.27
RNF4-216ENST00000511859 TRIM50Q86XT4 487 aa13.39□□□□□ -0.27
RNF4-216ENST00000511859 GIMAP8Q8ND71 665 aaPredicted RBP13.39□□□□□ -0.27
RNF4-216ENST00000511859 VN1R2Q8NFZ6 395 aa13.39□□□□□ -0.27
RNF4-216ENST00000511859 DNAJB3Q8WWF6 145 aa13.39□□□□□ -0.27
RNF4-216ENST00000511859 MTMR8Q96EF0 704 aa13.39□□□□□ -0.27
RNF4-216ENST00000511859 INPP4AQ96PE3 977 aaPredicted RBP13.39□□□□□ -0.27
RNF4-216ENST00000511859 AGO3Q9H9G7 860 aaKnown RBP13.39□□□□□ -0.27
RNF4-216ENST00000511859 RNF216Q9NWF9 866 aaPredicted RBP13.39□□□□□ -0.27
RNF4-216ENST00000511859 SUPT16HQ9Y5B9 1047 aaKnown RBP13.39□□□□□ -0.27
RNF4-216ENST00000511859 PCDHGC5Q9Y5F6 944 aa13.39□□□□□ -0.27
RNF4-216ENST00000511859 MBLAC1A4D2B0 266 aaPredicted RBP13.38□□□□□ -0.27
RNF4-216ENST00000511859 ZNF213O14771 459 aa13.38□□□□□ -0.27
RNF4-216ENST00000511859 SCG2P13521 617 aa13.38□□□□□ -0.27
RNF4-216ENST00000511859 TECP42680 631 aa13.38□□□□□ -0.27
RNF4-216ENST00000511859 MRPS9P82933 396 aaKnown RBP13.38□□□□□ -0.27
RNF4-216ENST00000511859 RBM10P98175 930 aaKnown RBP13.38□□□□□ -0.27
RNF4-216ENST00000511859 PPFIA1Q13136 1202 aa13.38□□□□□ -0.27
RNF4-216ENST00000511859 FCHSD1Q86WN1 690 aa13.38□□□□□ -0.27
RNF4-216ENST00000511859 TBC1D10CQ8IV04 446 aa13.38□□□□□ -0.27
RNF4-216ENST00000511859 OTUD7AQ8TE49 926 aaPredicted RBP13.38□□□□□ -0.27
RNF4-216ENST00000511859 LINC01599Q8WXQ3 324 aa13.38□□□□□ -0.27
RNF4-216ENST00000511859 ZSCAN10Q96SZ4 725 aaPredicted RBP13.38□□□□□ -0.27
RNF4-216ENST00000511859 TUBE1Q9UJT0 475 aa13.38□□□□□ -0.27
RNF4-216ENST00000511859 LRFN2Q9ULH4 789 aa13.38□□□□□ -0.27
RNF4-216ENST00000511859 FNDC1Q4ZHG4 1894 aaPredicted RBP13.37□□□□□ -0.27
RNF4-216ENST00000511859 KLRF2D3W0D1 207 aa13.37□□□□□ -0.27
RNF4-216ENST00000511859 FGF18O76093 207 aa13.37□□□□□ -0.27
RNF4-216ENST00000511859 BRD1O95696 1058 aa13.37□□□□□ -0.27
RNF4-216ENST00000511859 ERVFC1P60507 584 aa13.37□□□□□ -0.27
RNF4-216ENST00000511859 MRPS6P82932 125 aaKnown RBP13.37□□□□□ -0.27
RNF4-216ENST00000511859 SPOUT1Q5T280 376 aaKnown RBP13.37□□□□□ -0.27
RNF4-216ENST00000511859 SYCE2Q6PIF2 218 aa13.37□□□□□ -0.27
RNF4-216ENST00000511859 FAM227BQ96M60 508 aa13.37□□□□□ -0.27
RNF4-216ENST00000511859 NECTIN4Q96NY8 510 aa13.37□□□□□ -0.27
RNF4-216ENST00000511859 MFSD1Q9H3U5 465 aa13.37□□□□□ -0.27
RNF4-216ENST00000511859 TMEM260Q9NX78 707 aa13.37□□□□□ -0.27
RNF4-216ENST00000511859 ERAP1Q9NZ08 941 aa13.37□□□□□ -0.27
RNF4-216ENST00000511859 PCDHB7Q9Y5E2 793 aa13.37□□□□□ -0.27
RNF4-216ENST00000511859 FRYLO94915 3013 aa13.37□□□□□ -0.27
RNF4-216ENST00000511859 CEP250Q9BV73 2442 aa13.36□□□□□ -0.27
RNF4-216ENST00000511859 A0A0D9SFI3 127 aa13.36□□□□□ -0.27
RNF4-216ENST00000511859 RRN3P2A6NIE6 340 aa13.36□□□□□ -0.27
RNF4-216ENST00000511859 M0QZ92 97 aa13.36□□□□□ -0.27
RNF4-216ENST00000511859 FSCN2O14926 492 aa13.36□□□□□ -0.27
RNF4-216ENST00000511859 PPP1R11O60927 126 aaPredicted RBP13.36□□□□□ -0.27
RNF4-216ENST00000511859 SEMA3FQ13275 785 aa13.36□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms