RNA–Protein interactions for RNA: ENST00000498143.5

USP54-216, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best)

Gene USP54, Length 4,313 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-216ENST00000498143 CA14Q9ULX7 337 aa5.63□□□□□ -1.51
USP54-216ENST00000498143 NUP188Q5SRE5 1749 aa5.63□□□□□ -1.51
USP54-216ENST00000498143 ACACAQ13085 2346 aa5.63□□□□□ -1.51
USP54-216ENST00000498143 NSD2O96028 1365 aa5.63□□□□□ -1.51
USP54-216ENST00000498143 FAM170AA1A519 330 aa5.63□□□□□ -1.51
USP54-216ENST00000498143 KPNA6O60684 536 aa5.63□□□□□ -1.51
USP54-216ENST00000498143 ASGR1P07306 291 aa5.63□□□□□ -1.51
USP54-216ENST00000498143 RFC2P35250 354 aa5.63□□□□□ -1.51
USP54-216ENST00000498143 THPOP40225 353 aa5.63□□□□□ -1.51
USP54-216ENST00000498143 LMAN1P49257 510 aa5.63□□□□□ -1.51
USP54-216ENST00000498143 KPNA1P52294 538 aaPredicted RBP5.63□□□□□ -1.51
USP54-216ENST00000498143 MRPS35P82673 323 aaKnown RBP5.63□□□□□ -1.51
USP54-216ENST00000498143 KIAA0753Q2KHM9 967 aa5.63□□□□□ -1.51
USP54-216ENST00000498143 ZC3H12AQ5D1E8 599 aaKnown RBP5.63□□□□□ -1.51
USP54-216ENST00000498143 DDX55Q8NHQ9 600 aaKnown RBP eCLIP5.63□□□□□ -1.51
USP54-216ENST00000498143 PHF7Q9BWX1 381 aaPredicted RBP5.63□□□□□ -1.51
USP54-216ENST00000498143 GTPBP2Q9BX10 602 aaKnown RBP5.63□□□□□ -1.51
USP54-216ENST00000498143 LIMD1Q9UGP4 676 aa5.63□□□□□ -1.51
USP54-216ENST00000498143 MINPP1Q9UNW1 487 aa5.63□□□□□ -1.51
USP54-216ENST00000498143 AKAP2Q9Y2D5 859 aa5.63□□□□□ -1.51
USP54-216ENST00000498143 EPB41L3Q9Y2J2 1087 aaPredicted RBP5.63□□□□□ -1.51
USP54-216ENST00000498143 PRRC2BQ5JSZ5 2229 aaKnown RBP5.63□□□□□ -1.51
USP54-216ENST00000498143 TNRC6CQ9HCJ0 1690 aaKnown RBP5.63□□□□□ -1.51
USP54-216ENST00000498143 ARPC4-TTLL3A0A0A6YYG9 625 aa5.63□□□□□ -1.51
USP54-216ENST00000498143 SPECC1L-ADORA2AF8WAN1 911 aa5.63□□□□□ -1.51
USP54-216ENST00000498143 SLC28A2O43868 658 aa5.63□□□□□ -1.51
USP54-216ENST00000498143 CFHP08603 1231 aa5.63□□□□□ -1.51
USP54-216ENST00000498143 HDLBPQ00341 1268 aaKnown RBP5.63□□□□□ -1.51
USP54-216ENST00000498143 PLIN5Q00G26 463 aa5.63□□□□□ -1.51
USP54-216ENST00000498143 AMPD2Q01433 879 aa5.63□□□□□ -1.51
USP54-216ENST00000498143 MUM1Q2TAK8 710 aa5.63□□□□□ -1.51
USP54-216ENST00000498143 C1QTNF12Q5T7M4 302 aa5.63□□□□□ -1.51
USP54-216ENST00000498143 LRSAM1Q6UWE0 723 aa5.63□□□□□ -1.51
USP54-216ENST00000498143 OLFML1Q6UWY5 402 aa5.63□□□□□ -1.51
USP54-216ENST00000498143 SKAP1Q86WV1 359 aa5.63□□□□□ -1.51
USP54-216ENST00000498143 FOXP4Q8IVH2 680 aaPredicted RBP5.63□□□□□ -1.51
USP54-216ENST00000498143 CSGALNACT1Q8TDX6 532 aa5.63□□□□□ -1.51
USP54-216ENST00000498143 RSPH1Q8WYR4 309 aa5.63□□□□□ -1.51
USP54-216ENST00000498143 GLG1Q92896 1179 aa5.63□□□□□ -1.51
USP54-216ENST00000498143 HVCN1Q96D96 273 aa5.63□□□□□ -1.51
USP54-216ENST00000498143 MTG1Q9BT17 334 aaPredicted RBP5.63□□□□□ -1.51
USP54-216ENST00000498143 FBXL5Q9UKA1 691 aa5.63□□□□□ -1.51
USP54-216ENST00000498143 SIT1Q9Y3P8 196 aa5.63□□□□□ -1.51
USP54-216ENST00000498143 PRR23AA6NEV1 266 aa5.62□□□□□ -1.51
USP54-216ENST00000498143 MEI4A8MW99 385 aa5.62□□□□□ -1.51
USP54-216ENST00000498143 AP1G2O75843 785 aa5.62□□□□□ -1.51
USP54-216ENST00000498143 TMOD1P28289 359 aa5.62□□□□□ -1.51
USP54-216ENST00000498143 TRAPPC10P48553 1259 aa5.62□□□□□ -1.51
USP54-216ENST00000498143 KIF5AQ12840 1032 aa5.62□□□□□ -1.51
USP54-216ENST00000498143 CCL14Q16627 93 aa5.62□□□□□ -1.51
USP54-216ENST00000498143 FSCN1Q16658 493 aaKnown RBP5.62□□□□□ -1.51
USP54-216ENST00000498143 KIZQ2M2Z5 673 aa5.62□□□□□ -1.51
USP54-216ENST00000498143 GKAP1Q5VSY0 366 aaPredicted RBP5.62□□□□□ -1.51
USP54-216ENST00000498143 LMCD1Q9NZU5 365 aa5.62□□□□□ -1.51
USP54-216ENST00000498143 ZNF711Q9Y462 761 aa5.62□□□□□ -1.51
USP54-216ENST00000498143 ELP1O95163 1332 aa5.62□□□□□ -1.51
USP54-216ENST00000498143 CCDC194A0A1B0GVG4 234 aa5.62□□□□□ -1.51
USP54-216ENST00000498143 ABHD14A-ACY1A0A1B0GW23 586 aa5.62□□□□□ -1.51
USP54-216ENST00000498143 A0A1W2PQ45 241 aaPredicted RBP5.62□□□□□ -1.51
USP54-216ENST00000498143 A0A1W2PQY0 241 aa5.62□□□□□ -1.51
USP54-216ENST00000498143 NEMFO60524 1076 aa5.62□□□□□ -1.51
USP54-216ENST00000498143 CFIP05156 583 aa5.62□□□□□ -1.51
USP54-216ENST00000498143 PTPREP23469 700 aa5.62□□□□□ -1.51
USP54-216ENST00000498143 NLRP5P59047 1200 aa5.62□□□□□ -1.51
USP54-216ENST00000498143 ARPC4P59998 168 aa5.62□□□□□ -1.51
USP54-216ENST00000498143 RRP1BQ14684 758 aaKnown RBP5.62□□□□□ -1.51
USP54-216ENST00000498143 SKIDA1Q1XH10 827 aa5.62□□□□□ -1.51
USP54-216ENST00000498143 CRY2Q49AN0 593 aa5.62□□□□□ -1.51
USP54-216ENST00000498143 DSTYKQ6XUX3 929 aa5.62□□□□□ -1.51
USP54-216ENST00000498143 TMEFF1Q8IYR6 380 aa5.62□□□□□ -1.51
USP54-216ENST00000498143 BICD2Q8TD16 824 aa5.62□□□□□ -1.51
USP54-216ENST00000498143 HNRNPLLQ8WVV9 542 aaKnown RBP5.62□□□□□ -1.51
USP54-216ENST00000498143 RPAP3Q9H6T3 665 aaPredicted RBP5.62□□□□□ -1.51
USP54-216ENST00000498143 VRTNQ9H8Y1 702 aa5.62□□□□□ -1.51
USP54-216ENST00000498143 IGSF5Q9NSI5 407 aa5.62□□□□□ -1.51
USP54-216ENST00000498143 SYCE3A1L190 88 aa5.62□□□□□ -1.51
USP54-216ENST00000498143 KCNQ3O43525 872 aa5.62□□□□□ -1.51
USP54-216ENST00000498143 NTSR2O95665 410 aa5.62□□□□□ -1.51
USP54-216ENST00000498143 SERPINC1P01008 464 aa5.62□□□□□ -1.51
USP54-216ENST00000498143 CCINQ13939 588 aa5.62□□□□□ -1.51
USP54-216ENST00000498143 ANKRD1Q15327 319 aa5.62□□□□□ -1.51
USP54-216ENST00000498143 PTPN14Q15678 1187 aa5.62□□□□□ -1.51
USP54-216ENST00000498143 SGO2Q562F6 1265 aa5.62□□□□□ -1.51
USP54-216ENST00000498143 TMEM240Q5SV17 173 aa5.62□□□□□ -1.51
USP54-216ENST00000498143 PRR23CQ6ZRP0 262 aa5.62□□□□□ -1.51
USP54-216ENST00000498143 NANOGNBQ7Z5D8 188 aa5.62□□□□□ -1.51
USP54-216ENST00000498143 SH3RF1Q7Z6J0 888 aa5.62□□□□□ -1.51
USP54-216ENST00000498143 PEX5LQ8IYB4 626 aa5.62□□□□□ -1.51
USP54-216ENST00000498143 ELMOD1Q8N336 334 aa5.62□□□□□ -1.51
USP54-216ENST00000498143 SERBP1Q8NC51 408 aaKnown RBP eCLIP5.62□□□□□ -1.51
USP54-216ENST00000498143 TINF2Q9BSI4 451 aa5.62□□□□□ -1.51
USP54-216ENST00000498143 TSEN34Q9BSV6 310 aaKnown RBP5.62□□□□□ -1.51
USP54-216ENST00000498143 OSBPL5Q9H0X9 879 aaPredicted RBP5.62□□□□□ -1.51
USP54-216ENST00000498143 SYNCQ9H7C4 482 aa5.62□□□□□ -1.51
USP54-216ENST00000498143 MRGBPQ9NV56 204 aa5.62□□□□□ -1.51
USP54-216ENST00000498143 PRR12Q9ULL5 1215 aa5.62□□□□□ -1.51
USP54-216ENST00000498143 CARD8Q9Y2G2 431 aa5.62□□□□□ -1.51
USP54-216ENST00000498143 CPLX1O14810 134 aa5.62□□□□□ -1.51
USP54-216ENST00000498143 HNRNPCP07910 306 aaKnown RBP eCLIP5.62□□□□□ -1.51
USP54-216ENST00000498143 MCAMP43121 646 aa5.62□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms