RNA–Protein interactions for RNA: ENST00000498041.1

RIF1-212, Transcript of replication timing regulatory factor 1, human

TSL 3

Gene RIF1, Length 776 nt, Biotype processed transcript, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RIF1-212	ENST00000498041	DLX2	Q07687	328 aa	Predicted RBP	4.18	□□□□□ -1.74
RIF1-212	ENST00000498041	ADAM9	Q13443	819 aa		4.18	□□□□□ -1.74
RIF1-212	ENST00000498041	ZNF460	Q14592	562 aa		4.18	□□□□□ -1.74
RIF1-212	ENST00000498041	ARHGAP44	Q17R89	818 aa		4.18	□□□□□ -1.74
RIF1-212	ENST00000498041	CFAP100	Q494V2	611 aa		4.18	□□□□□ -1.74
RIF1-212	ENST00000498041	PLEKHG4	Q58EX7	1191 aa		4.18	□□□□□ -1.74
RIF1-212	ENST00000498041	TAF7L	Q5H9L4	462 aa		4.18	□□□□□ -1.74
RIF1-212	ENST00000498041	SDE2	Q6IQ49	451 aa		4.18	□□□□□ -1.74
RIF1-212	ENST00000498041	TMC5	Q6UXY8	1006 aa		4.18	□□□□□ -1.74
RIF1-212	ENST00000498041	LIPI	Q6XZB0	460 aa		4.18	□□□□□ -1.74
RIF1-212	ENST00000498041	PROSER1	Q86XN7	944 aa		4.18	□□□□□ -1.74
RIF1-212	ENST00000498041	NIM1K	Q8IY84	436 aa		4.18	□□□□□ -1.74
RIF1-212	ENST00000498041	TP53I13	Q8NBR0	393 aa	Predicted RBP	4.18	□□□□□ -1.74
RIF1-212	ENST00000498041	SYT8	Q8NBV8	401 aa		4.18	□□□□□ -1.74
RIF1-212	ENST00000498041	ZNF526	Q8TF50	670 aa	Predicted RBP	4.18	□□□□□ -1.74
RIF1-212	ENST00000498041	WNK4	Q96J92	1243 aa		4.18	□□□□□ -1.74
RIF1-212	ENST00000498041	CLIC6	Q96NY7	704 aa		4.18	□□□□□ -1.74
RIF1-212	ENST00000498041	WRNIP1	Q96S55	665 aa		4.18	□□□□□ -1.74
RIF1-212	ENST00000498041	NTM	Q9P121	344 aa		4.18	□□□□□ -1.74
RIF1-212	ENST00000498041	CYP7B1	O75881	506 aa		4.17	□□□□□ -1.74
RIF1-212	ENST00000498041	GLRX3	O76003	335 aa	Known RBP	4.17	□□□□□ -1.74
RIF1-212	ENST00000498041	JMJD7	P0C870	316 aa		4.17	□□□□□ -1.74
RIF1-212	ENST00000498041	RPL13	P26373	211 aa	Known RBP	4.17	□□□□□ -1.74
RIF1-212	ENST00000498041	HSD3B2	P26439	372 aa		4.17	□□□□□ -1.74
RIF1-212	ENST00000498041	SARS	P49591	514 aa	Known RBP	4.17	□□□□□ -1.74
RIF1-212	ENST00000498041	MECP2	P51608	486 aa	Known RBP	4.17	□□□□□ -1.74
RIF1-212	ENST00000498041	DBP	Q10586	325 aa	Predicted RBP	4.17	□□□□□ -1.74
RIF1-212	ENST00000498041	DALRD3	Q5D0E6	543 aa	Known RBP	4.17	□□□□□ -1.74
RIF1-212	ENST00000498041	PIK3R6	Q5UE93	754 aa		4.17	□□□□□ -1.74
RIF1-212	ENST00000498041	ERICH6B	Q5W0A0	696 aa		4.17	□□□□□ -1.74
RIF1-212	ENST00000498041	CD276	Q5ZPR3	534 aa		4.17	□□□□□ -1.74
RIF1-212	ENST00000498041	CDCA2	Q69YH5	1023 aa	Predicted RBP	4.17	□□□□□ -1.74
RIF1-212	ENST00000498041	OTOP1	Q7RTM1	612 aa		4.17	□□□□□ -1.74
RIF1-212	ENST00000498041	LRRTM3	Q86VH5	581 aa		4.17	□□□□□ -1.74
RIF1-212	ENST00000498041	NOSTRIN	Q8IVI9	506 aa		4.17	□□□□□ -1.74
RIF1-212	ENST00000498041	DHX37	Q8IY37	1157 aa	Known RBP	4.17	□□□□□ -1.74
RIF1-212	ENST00000498041	CARF	Q8N187	725 aa		4.17	□□□□□ -1.74
RIF1-212	ENST00000498041	MFSD3	Q96ES6	412 aa		4.17	□□□□□ -1.74
RIF1-212	ENST00000498041	BOC	Q9BWV1	1114 aa		4.17	□□□□□ -1.74
RIF1-212	ENST00000498041	XYLT2	Q9H1B5	865 aa		4.17	□□□□□ -1.74
RIF1-212	ENST00000498041	TMPRSS5	Q9H3S3	457 aa		4.17	□□□□□ -1.74
RIF1-212	ENST00000498041	CABP5	Q9NP86	173 aa		4.17	□□□□□ -1.74
RIF1-212	ENST00000498041	DLL4	Q9NR61	685 aa		4.17	□□□□□ -1.74
RIF1-212	ENST00000498041	KCNH7	Q9NS40	1196 aa		4.17	□□□□□ -1.74
RIF1-212	ENST00000498041	RTEL1	Q9NZ71	1219 aa		4.17	□□□□□ -1.74
RIF1-212	ENST00000498041	RBPJL	Q9UBG7	517 aa		4.17	□□□□□ -1.74
RIF1-212	ENST00000498041	WASF3	Q9UPY6	502 aa		4.17	□□□□□ -1.74
RIF1-212	ENST00000498041		A0A1B0GTL3	188 aa		4.16	□□□□□ -1.74
RIF1-212	ENST00000498041	LOC107983988	A0A1B0GUW6	1196 aa	Predicted RBP	4.16	□□□□□ -1.74
RIF1-212	ENST00000498041	PRAMEF25	A6NGN4	478 aa		4.16	□□□□□ -1.74
RIF1-212	ENST00000498041	ZNF839	A8K0R7	811 aa		4.16	□□□□□ -1.74
RIF1-212	ENST00000498041	SCD	O00767	359 aa		4.16	□□□□□ -1.74
RIF1-212	ENST00000498041	HIP1R	O75146	1068 aa		4.16	□□□□□ -1.74
RIF1-212	ENST00000498041	C4BPA	P04003	597 aa	Known RBP	4.16	□□□□□ -1.74
RIF1-212	ENST00000498041	POU3F2	P20265	443 aa	Predicted RBP	4.16	□□□□□ -1.74
RIF1-212	ENST00000498041	NEK4	P51957	841 aa		4.16	□□□□□ -1.74
RIF1-212	ENST00000498041	SLURP1	P55000	103 aa		4.16	□□□□□ -1.74
RIF1-212	ENST00000498041	HERVK_113	P62684	666 aa		4.16	□□□□□ -1.74
RIF1-212	ENST00000498041	IRF9	Q00978	393 aa		4.16	□□□□□ -1.74
RIF1-212	ENST00000498041	PFKP	Q01813	784 aa		4.16	□□□□□ -1.74
RIF1-212	ENST00000498041	PRR31	Q5SQ13	230 aa		4.16	□□□□□ -1.74
RIF1-212	ENST00000498041	CPZ	Q66K79	652 aa		4.16	□□□□□ -1.74
RIF1-212	ENST00000498041	KRTAP5-3	Q6L8H2	238 aa		4.16	□□□□□ -1.74
RIF1-212	ENST00000498041	CNNM4	Q6P4Q7	775 aa		4.16	□□□□□ -1.74
RIF1-212	ENST00000498041	PKN3	Q6P5Z2	889 aa		4.16	□□□□□ -1.74
RIF1-212	ENST00000498041	SP8	Q8IXZ3	490 aa		4.16	□□□□□ -1.74
RIF1-212	ENST00000498041	ADGRG2	Q8IZP9	1017 aa		4.16	□□□□□ -1.74
RIF1-212	ENST00000498041	DTX3	Q8N9I9	347 aa		4.16	□□□□□ -1.74
RIF1-212	ENST00000498041	CHST14	Q8NCH0	376 aa		4.16	□□□□□ -1.74
RIF1-212	ENST00000498041	IGDCC4	Q8TDY8	1250 aa		4.16	□□□□□ -1.74
RIF1-212	ENST00000498041	DDX1	Q92499	740 aa	Known RBP	4.16	□□□□□ -1.74
RIF1-212	ENST00000498041	DLG3	Q92796	817 aa		4.16	□□□□□ -1.74
RIF1-212	ENST00000498041	ZSWIM3	Q96MP5	696 aa		4.16	□□□□□ -1.74
RIF1-212	ENST00000498041	ORAI3	Q9BRQ5	295 aa		4.16	□□□□□ -1.74
RIF1-212	ENST00000498041	SLK	Q9H2G2	1235 aa	Predicted RBP	4.16	□□□□□ -1.74
RIF1-212	ENST00000498041	LUC7L	Q9NQ29	371 aa	Known RBP	4.16	□□□□□ -1.74
RIF1-212	ENST00000498041	ARHGAP28	Q9P2N2	729 aa		4.16	□□□□□ -1.74
RIF1-212	ENST00000498041	CROT	Q9UKG9	612 aa		4.16	□□□□□ -1.74
RIF1-212	ENST00000498041	B3GALT1	Q9Y5Z6	326 aa		4.16	□□□□□ -1.74
RIF1-212	ENST00000498041	PTPDC1	A2A3K4	754 aa		4.15	□□□□□ -1.75
RIF1-212	ENST00000498041	CBX4	O00257	560 aa		4.15	□□□□□ -1.75
RIF1-212	ENST00000498041	TRAF5	O00463	557 aa		4.15	□□□□□ -1.75
RIF1-212	ENST00000498041	CLSTN1	O94985	981 aa		4.15	□□□□□ -1.75
RIF1-212	ENST00000498041	ZBTB48	P10074	688 aa	Predicted RBP	4.15	□□□□□ -1.75
RIF1-212	ENST00000498041	KCNC1	P48547	511 aa		4.15	□□□□□ -1.75
RIF1-212	ENST00000498041	GYS2	P54840	703 aa		4.15	□□□□□ -1.75
RIF1-212	ENST00000498041	KRTAP10-2	P60368	255 aa		4.15	□□□□□ -1.75
RIF1-212	ENST00000498041	RTP5	Q14D33	572 aa		4.15	□□□□□ -1.75
RIF1-212	ENST00000498041	SEC23A	Q15436	765 aa		4.15	□□□□□ -1.75
RIF1-212	ENST00000498041	SKIDA1	Q1XH10	827 aa		4.15	□□□□□ -1.75
RIF1-212	ENST00000498041	TM4SF20	Q53R12	229 aa		4.15	□□□□□ -1.75
RIF1-212	ENST00000498041	PRAMEF18	Q5VWM3	479 aa		4.15	□□□□□ -1.75
RIF1-212	ENST00000498041	KIF18B	Q86Y91	864 aa		4.15	□□□□□ -1.75
RIF1-212	ENST00000498041	AHI1	Q8N157	1196 aa		4.15	□□□□□ -1.75
RIF1-212	ENST00000498041	CXorf38	Q8TB03	319 aa		4.15	□□□□□ -1.75
RIF1-212	ENST00000498041	BDH2	Q9BUT1	245 aa		4.15	□□□□□ -1.75
RIF1-212	ENST00000498041	SLC39A2	Q9NP94	309 aa		4.15	□□□□□ -1.75
RIF1-212	ENST00000498041	ARHGAP20	Q9P2F6	1191 aa		4.15	□□□□□ -1.75
RIF1-212	ENST00000498041	B4GALT6	Q9UBX8	382 aa		4.15	□□□□□ -1.75
RIF1-212	ENST00000498041	SHROOM4	Q9ULL8	1493 aa		4.15	□□□□□ -1.75

Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms