RNA–Protein interactions for RNA: ENST00000497539.5

SNRNP200-208, Transcript of small nuclear ribonucleoprotein U5 subunit 200, humanhuman

TSL 1 (best)

Gene SNRNP200, Length 2,666 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP200-208ENST00000497539 RLFQ13129 1914 aa12.77□□□□□ -0.37
SNRNP200-208ENST00000497539 CCDC151A5D8V7 595 aa12.77□□□□□ -0.37
SNRNP200-208ENST00000497539 MSH4O15457 936 aa12.77□□□□□ -0.37
SNRNP200-208ENST00000497539 SCP2P22307 547 aa12.77□□□□□ -0.37
SNRNP200-208ENST00000497539 MYBPC2Q14324 1141 aa12.77□□□□□ -0.37
SNRNP200-208ENST00000497539 BEND6Q5SZJ8 279 aaPredicted RBP12.77□□□□□ -0.37
SNRNP200-208ENST00000497539 NIPA1Q7RTP0 329 aa12.77□□□□□ -0.37
SNRNP200-208ENST00000497539 PPFIBP1Q86W92 1011 aa12.77□□□□□ -0.37
SNRNP200-208ENST00000497539 ZC3H3Q8IXZ2 948 aaKnown RBP12.77□□□□□ -0.37
SNRNP200-208ENST00000497539 MICALL2Q8IY33 904 aa12.77□□□□□ -0.37
SNRNP200-208ENST00000497539 DDX12PQ92771 950 aa12.77□□□□□ -0.37
SNRNP200-208ENST00000497539 TRIM47Q96LD4 638 aa12.77□□□□□ -0.37
SNRNP200-208ENST00000497539 KDM4CQ9H3R0 1056 aa12.77□□□□□ -0.37
SNRNP200-208ENST00000497539 CWC15Q9P013 229 aaKnown RBP12.77□□□□□ -0.37
SNRNP200-208ENST00000497539 FAN1Q9Y2M0 1017 aa12.77□□□□□ -0.37
SNRNP200-208ENST00000497539 PCDHA2Q9Y5H9 948 aa12.77□□□□□ -0.37
SNRNP200-208ENST00000497539 ZNF536O15090 1300 aa12.77□□□□□ -0.37
SNRNP200-208ENST00000497539 TRIM49BA6NDI0 452 aa12.76□□□□□ -0.37
SNRNP200-208ENST00000497539 MAP2K7O14733 419 aa12.76□□□□□ -0.37
SNRNP200-208ENST00000497539 N4BP3O15049 544 aa12.76□□□□□ -0.37
SNRNP200-208ENST00000497539 CASP14P31944 242 aa12.76□□□□□ -0.37
SNRNP200-208ENST00000497539 CD151P48509 253 aa12.76□□□□□ -0.37
SNRNP200-208ENST00000497539 SLC12A3P55017 1021 aa12.76□□□□□ -0.37
SNRNP200-208ENST00000497539 PPP2R5CQ13362 524 aa12.76□□□□□ -0.37
SNRNP200-208ENST00000497539 ANKRD40Q6AI12 368 aa12.76□□□□□ -0.37
SNRNP200-208ENST00000497539 MIGA2Q7L4E1 593 aa12.76□□□□□ -0.37
SNRNP200-208ENST00000497539 APOBEC3FQ8IUX4 373 aaKnown RBP12.76□□□□□ -0.37
SNRNP200-208ENST00000497539 SLC35F6Q8N357 371 aa12.76□□□□□ -0.37
SNRNP200-208ENST00000497539 SEMA6BQ9H3T3 888 aa12.76□□□□□ -0.37
SNRNP200-208ENST00000497539 WDR90Q96KV7 1748 aa12.76□□□□□ -0.37
SNRNP200-208ENST00000497539 KIF5CO60282 957 aa12.76□□□□□ -0.37
SNRNP200-208ENST00000497539 MARCH6O60337 910 aa12.76□□□□□ -0.37
SNRNP200-208ENST00000497539 MED24O75448 989 aa12.76□□□□□ -0.37
SNRNP200-208ENST00000497539 FGFR1OPO95684 399 aaKnown RBP12.76□□□□□ -0.37
SNRNP200-208ENST00000497539 GYPCP04921 128 aa12.76□□□□□ -0.37
SNRNP200-208ENST00000497539 PLA2G4BP0C869 781 aa12.76□□□□□ -0.37
SNRNP200-208ENST00000497539 SPATA31C1P0DKV0 1188 aa12.76□□□□□ -0.37
SNRNP200-208ENST00000497539 FCER1AP12319 257 aa12.76□□□□□ -0.37
SNRNP200-208ENST00000497539 ZCWPW2Q504Y3 356 aa12.76□□□□□ -0.37
SNRNP200-208ENST00000497539 PRR16Q569H4 304 aa12.76□□□□□ -0.37
SNRNP200-208ENST00000497539 DCAF15Q66K64 600 aa12.76□□□□□ -0.37
SNRNP200-208ENST00000497539 MB21D1Q8N884 522 aa12.76□□□□□ -0.37
SNRNP200-208ENST00000497539 SLF1Q9BQI6 1058 aa12.76□□□□□ -0.37
SNRNP200-208ENST00000497539 GLIS2Q9BZE0 524 aaPredicted RBP12.76□□□□□ -0.37
SNRNP200-208ENST00000497539 PLEKHA4Q9H4M7 779 aa12.76□□□□□ -0.37
SNRNP200-208ENST00000497539 SUDS3Q9H7L9 328 aaPredicted RBP12.76□□□□□ -0.37
SNRNP200-208ENST00000497539 CDC23Q9UJX2 597 aa12.76□□□□□ -0.37
SNRNP200-208ENST00000497539 BCRP11274 1271 aa12.75□□□□□ -0.37
SNRNP200-208ENST00000497539 DNM2P50570 870 aa12.75□□□□□ -0.37
SNRNP200-208ENST00000497539 VSNL1P62760 191 aa12.75□□□□□ -0.37
SNRNP200-208ENST00000497539 COASYQ13057 564 aa12.75□□□□□ -0.37
SNRNP200-208ENST00000497539 FIGNQ5HY92 759 aa12.75□□□□□ -0.37
SNRNP200-208ENST00000497539 B3GNT9Q6UX72 402 aa12.75□□□□□ -0.37
SNRNP200-208ENST00000497539 LDHDQ86WU2 507 aa12.75□□□□□ -0.37
SNRNP200-208ENST00000497539 CSGALNACT2Q8N6G5 542 aa12.75□□□□□ -0.37
SNRNP200-208ENST00000497539 PRPF38AQ8NAV1 312 aaKnown RBP12.75□□□□□ -0.37
SNRNP200-208ENST00000497539 RETREG2Q8NC44 543 aa12.75□□□□□ -0.37
SNRNP200-208ENST00000497539 EXOC4Q96A65 974 aa12.75□□□□□ -0.37
SNRNP200-208ENST00000497539 C12orf42Q96LP6 360 aa12.75□□□□□ -0.37
SNRNP200-208ENST00000497539 ZNF341Q9BYN7 854 aa12.75□□□□□ -0.37
SNRNP200-208ENST00000497539 TUFT1Q9NNX1 390 aa12.75□□□□□ -0.37
SNRNP200-208ENST00000497539 BMP2KQ9NSY1 1161 aaPredicted RBP12.75□□□□□ -0.37
SNRNP200-208ENST00000497539 TAB2Q9NYJ8 693 aa12.75□□□□□ -0.37
SNRNP200-208ENST00000497539 MAGEC2Q9UBF1 373 aaPredicted RBP12.75□□□□□ -0.37
SNRNP200-208ENST00000497539 CNOT7Q9UIV1 285 aaKnown RBP12.75□□□□□ -0.37
SNRNP200-208ENST00000497539 SBF1O95248 1867 aa12.75□□□□□ -0.37
SNRNP200-208ENST00000497539 PSMD10O75832 226 aa12.75□□□□□ -0.37
SNRNP200-208ENST00000497539 EGFRP00533 1210 aa12.75□□□□□ -0.37
SNRNP200-208ENST00000497539 CYP11B2P19099 503 aa12.75□□□□□ -0.37
SNRNP200-208ENST00000497539 FXR1P51114 621 aaKnown RBP eCLIP12.75□□□□□ -0.372e-6■■■□□ 16
SNRNP200-208ENST00000497539 USP14P54578 494 aa12.75□□□□□ -0.37
SNRNP200-208ENST00000497539 BRD3Q15059 726 aa12.75□□□□□ -0.37
SNRNP200-208ENST00000497539 SYT2Q8N9I0 419 aaPredicted RBP12.75□□□□□ -0.37
SNRNP200-208ENST00000497539 CCDC102AQ96A19 550 aa12.75□□□□□ -0.37
SNRNP200-208ENST00000497539 HACL1Q9UJ83 578 aa12.75□□□□□ -0.37
SNRNP200-208ENST00000497539 ZNF541Q9H0D2 1346 aa12.75□□□□□ -0.37
SNRNP200-208ENST00000497539 RNF225M0QZC1 329 aaPredicted RBP12.75□□□□□ -0.37
SNRNP200-208ENST00000497539 FAM163BP0C2L3 166 aa12.75□□□□□ -0.37
SNRNP200-208ENST00000497539 ACTN2P35609 894 aa12.75□□□□□ -0.37
SNRNP200-208ENST00000497539 RASSF7Q02833 373 aa12.75□□□□□ -0.37
SNRNP200-208ENST00000497539 CATSPER3Q86XQ3 398 aa12.75□□□□□ -0.37
SNRNP200-208ENST00000497539 MCF2L2Q86YR7 1114 aa12.75□□□□□ -0.37
SNRNP200-208ENST00000497539 CCDC65Q8IXS2 484 aa12.75□□□□□ -0.37
SNRNP200-208ENST00000497539 SDR16C5Q8N3Y7 309 aa12.75□□□□□ -0.37
SNRNP200-208ENST00000497539 CLEC4DQ8WXI8 215 aa12.75□□□□□ -0.37
SNRNP200-208ENST00000497539 PIK3R5Q8WYR1 880 aa12.75□□□□□ -0.37
SNRNP200-208ENST00000497539 ERGIC2Q96RQ1 377 aa12.75□□□□□ -0.37
SNRNP200-208ENST00000497539 SLC38A10Q9HBR0 1119 aa12.75□□□□□ -0.37
SNRNP200-208ENST00000497539 ETAA1Q9NY74 926 aa12.75□□□□□ -0.37
SNRNP200-208ENST00000497539 KIAA1024Q9UPX6 916 aa12.75□□□□□ -0.37
SNRNP200-208ENST00000497539 MAPK8IP1Q9UQF2 711 aa12.75□□□□□ -0.37
SNRNP200-208ENST00000497539 BCS1LQ9Y276 419 aa12.75□□□□□ -0.37
SNRNP200-208ENST00000497539 SMCHD1A6NHR9 2005 aa12.74□□□□□ -0.37
SNRNP200-208ENST00000497539 POTEB3A0JP26 581 aa12.74□□□□□ -0.37
SNRNP200-208ENST00000497539 POTECB2RU33 542 aa12.74□□□□□ -0.37
SNRNP200-208ENST00000497539 ERCC3P19447 782 aa12.74□□□□□ -0.37
SNRNP200-208ENST00000497539 HOXA13P31271 388 aaPredicted RBP12.74□□□□□ -0.37
SNRNP200-208ENST00000497539 INPP5BP32019 993 aa12.74□□□□□ -0.37
SNRNP200-208ENST00000497539 ADCY2Q08462 1091 aa12.74□□□□□ -0.37
SNRNP200-208ENST00000497539 NOL9Q5SY16 702 aaKnown RBP12.74□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 49.5 ms