RNA–Protein interactions for RNA: ENST00000497018.1

UBR4-217, Transcript of ubiquitin protein ligase E3 component n-recognin 4, humanhuman

TSL 3

Gene UBR4, Length 183 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR4-217ENST00000497018 ZNF281Q9Y2X9 895 aa2.28□□□□□ -2.04
UBR4-217ENST00000497018 TMEM98Q9Y2Y6 226 aa2.28□□□□□ -2.04
UBR4-217ENST00000497018 COQ6Q9Y2Z9 468 aa2.28□□□□□ -2.04
UBR4-217ENST00000497018 PCDHGC4Q9Y5F7 938 aa2.28□□□□□ -2.04
UBR4-217ENST00000497018 PCDHA8Q9Y5H6 950 aa2.28□□□□□ -2.04
UBR4-217ENST00000497018 MRFAP1Q9Y605 127 aa2.28□□□□□ -2.04
UBR4-217ENST00000497018 RGPD1P0DJD0 1748 aa2.28□□□□□ -2.05
UBR4-217ENST00000497018 IQGAP1P46940 1657 aa2.28□□□□□ -2.05
UBR4-217ENST00000497018 NEURL4Q96JN8 1562 aa2.27□□□□□ -2.05
UBR4-217ENST00000497018 ZMYM4Q5VZL5 1548 aa2.27□□□□□ -2.05
UBR4-217ENST00000497018 DENND4BO75064 1496 aaPredicted RBP2.27□□□□□ -2.05
UBR4-217ENST00000497018 SCAF11Q99590 1463 aaKnown RBP2.27□□□□□ -2.05
UBR4-217ENST00000497018 UACAQ9BZF9 1416 aa2.27□□□□□ -2.05
UBR4-217ENST00000497018 CEP350Q5VT06 3117 aa2.27□□□□□ -2.05
UBR4-217ENST00000497018 PRAMEF27A3QJZ7 478 aa2.27□□□□□ -2.05
UBR4-217ENST00000497018 SOBPA7XYQ1 873 aa2.27□□□□□ -2.05
UBR4-217ENST00000497018 TISP43B9A030 160 aa2.27□□□□□ -2.05
UBR4-217ENST00000497018 B9A039 149 aa2.27□□□□□ -2.05
UBR4-217ENST00000497018 TNFRSF10AO00220 468 aa2.27□□□□□ -2.05
UBR4-217ENST00000497018 GOLIM4O00461 696 aa2.27□□□□□ -2.05
UBR4-217ENST00000497018 NOP56O00567 594 aaKnown RBP2.27□□□□□ -2.05
UBR4-217ENST00000497018 DVL2O14641 736 aa2.27□□□□□ -2.05
UBR4-217ENST00000497018 BNIP3LO60238 219 aa2.27□□□□□ -2.05
UBR4-217ENST00000497018 MSCO60682 206 aa2.27□□□□□ -2.05
UBR4-217ENST00000497018 TMCC2O75069 709 aa2.27□□□□□ -2.05
UBR4-217ENST00000497018 UBXN7O94888 489 aa2.27□□□□□ -2.05
UBR4-217ENST00000497018 SLITRK5O94991 958 aa2.27□□□□□ -2.05
UBR4-217ENST00000497018 GHRHP01286 108 aa2.27□□□□□ -2.05
UBR4-217ENST00000497018 SNRPB2P08579 225 aaKnown RBP2.27□□□□□ -2.05
UBR4-217ENST00000497018 IFIT1P09914 478 aaKnown RBP2.27□□□□□ -2.05
UBR4-217ENST00000497018 HSPA1AP0DMV8 641 aaKnown RBP2.27□□□□□ -2.05
UBR4-217ENST00000497018 HSPA1BP0DMV9 641 aaKnown RBP2.27□□□□□ -2.05
UBR4-217ENST00000497018 ITGA4P13612 1032 aa2.27□□□□□ -2.05
UBR4-217ENST00000497018 TSHRP16473 764 aa2.27□□□□□ -2.05
UBR4-217ENST00000497018 SMPD1P17405 629 aa2.27□□□□□ -2.05
UBR4-217ENST00000497018 NAT1P18440 290 aa2.27□□□□□ -2.05
UBR4-217ENST00000497018 PDIA3P30101 505 aaKnown RBP2.27□□□□□ -2.05
UBR4-217ENST00000497018 GALNSP34059 522 aa2.27□□□□□ -2.05
UBR4-217ENST00000497018 CAP2P40123 477 aa2.27□□□□□ -2.05
UBR4-217ENST00000497018 YARSP54577 528 aaKnown RBP2.27□□□□□ -2.05
UBR4-217ENST00000497018 SCAND1P57086 179 aa2.27□□□□□ -2.05
UBR4-217ENST00000497018 ZNF445P59923 1031 aa2.27□□□□□ -2.05
UBR4-217ENST00000497018 ERVK-24P63145 666 aa2.27□□□□□ -2.05
UBR4-217ENST00000497018 KRT83P78385 493 aa2.27□□□□□ -2.05
UBR4-217ENST00000497018 SMAD3P84022 425 aaKnown RBP2.27□□□□□ -2.05
UBR4-217ENST00000497018 ROR1Q01973 937 aa2.27□□□□□ -2.05
UBR4-217ENST00000497018 GALNT1Q10472 559 aaPredicted RBP2.27□□□□□ -2.05
UBR4-217ENST00000497018 MOGSQ13724 837 aa2.27□□□□□ -2.05
UBR4-217ENST00000497018 BLMHQ13867 455 aa2.27□□□□□ -2.05
UBR4-217ENST00000497018 PDE1CQ14123 709 aaPredicted RBP2.27□□□□□ -2.05
UBR4-217ENST00000497018 IKBKEQ14164 716 aa2.27□□□□□ -2.05
UBR4-217ENST00000497018 SART3Q15020 963 aaKnown RBP2.27□□□□□ -2.05
UBR4-217ENST00000497018 SMAD2Q15796 467 aaKnown RBP2.27□□□□□ -2.05
UBR4-217ENST00000497018 NKG7Q16617 165 aa2.27□□□□□ -2.05
UBR4-217ENST00000497018 KIAA0753Q2KHM9 967 aa2.27□□□□□ -2.05
UBR4-217ENST00000497018 SPECC1Q5M775 1068 aa2.27□□□□□ -2.05
UBR4-217ENST00000497018 FKBP15Q5T1M5 1219 aa2.27□□□□□ -2.05
UBR4-217ENST00000497018 FAM182BQ5T319 152 aa2.27□□□□□ -2.05
UBR4-217ENST00000497018 NBPF12Q5TAG4 269 aaPredicted RBP2.27□□□□□ -2.05
UBR4-217ENST00000497018 AGAP9Q5VTM2 703 aa2.27□□□□□ -2.05
UBR4-217ENST00000497018 SPATA1Q5VX52 437 aa2.27□□□□□ -2.05
UBR4-217ENST00000497018 IZUMO3Q5VZ72 239 aa2.27□□□□□ -2.05
UBR4-217ENST00000497018 NPNTQ6UXI9 565 aa2.27□□□□□ -2.05
UBR4-217ENST00000497018 RIPOR1Q6ZS17 1223 aa2.27□□□□□ -2.05
UBR4-217ENST00000497018 HFE2Q6ZVN8 426 aa2.27□□□□□ -2.05
UBR4-217ENST00000497018 USP53Q70EK8 1073 aa2.27□□□□□ -2.05
UBR4-217ENST00000497018 PDZD4Q76G19 769 aaPredicted RBP2.27□□□□□ -2.05
UBR4-217ENST00000497018 FASTKD5Q7L8L6 764 aaKnown RBP2.27□□□□□ -2.05
UBR4-217ENST00000497018 UBE3DQ7Z6J8 389 aa2.27□□□□□ -2.05
UBR4-217ENST00000497018 DPP9Q86TI2 863 aa2.27□□□□□ -2.05
UBR4-217ENST00000497018 C11orf74Q86VG3 221 aa2.27□□□□□ -2.05
UBR4-217ENST00000497018 C12orf40Q86WS4 652 aa2.27□□□□□ -2.05
UBR4-217ENST00000497018 COL23A1Q86Y22 540 aaPredicted RBP2.27□□□□□ -2.05
UBR4-217ENST00000497018 MAP4K3Q8IVH8 894 aa2.27□□□□□ -2.05
UBR4-217ENST00000497018 CCDC144CPQ8IYA2 1237 aa2.27□□□□□ -2.05
UBR4-217ENST00000497018 PHACTR4Q8IZ21 702 aa2.27□□□□□ -2.05
UBR4-217ENST00000497018 CRACR2BQ8N4Y2 399 aaPredicted RBP2.27□□□□□ -2.05
UBR4-217ENST00000497018 LSMEM1Q8N8F7 131 aa2.27□□□□□ -2.05
UBR4-217ENST00000497018 RNF152Q8N8N0 203 aa2.27□□□□□ -2.05
UBR4-217ENST00000497018 ZNF610Q8N9Z0 462 aa2.27□□□□□ -2.05
UBR4-217ENST00000497018 SIMC1Q8NDZ2 872 aa2.27□□□□□ -2.05
UBR4-217ENST00000497018 SLC30A5Q8TAD4 765 aa2.27□□□□□ -2.05
UBR4-217ENST00000497018 SYTL5Q8TDW5 730 aaPredicted RBP2.27□□□□□ -2.05
UBR4-217ENST00000497018 CENPIQ92674 756 aaPredicted RBP2.27□□□□□ -2.05
UBR4-217ENST00000497018 RPGRQ92834 1020 aaKnown RBP2.27□□□□□ -2.05
UBR4-217ENST00000497018 COPS5Q92905 334 aa2.27□□□□□ -2.05
UBR4-217ENST00000497018 USP13Q92995 863 aaPredicted RBP2.27□□□□□ -2.05
UBR4-217ENST00000497018 ELMO3Q96BJ8 720 aa2.27□□□□□ -2.05
UBR4-217ENST00000497018 TBC1D20Q96BZ9 403 aa2.27□□□□□ -2.05
UBR4-217ENST00000497018 GMCL1Q96IK5 515 aa2.27□□□□□ -2.05
UBR4-217ENST00000497018 RSRC1Q96IZ7 334 aaKnown RBP2.27□□□□□ -2.05
UBR4-217ENST00000497018 CCDC74BQ96LY2 380 aa2.27□□□□□ -2.05
UBR4-217ENST00000497018 MAP3K14Q99558 947 aa2.27□□□□□ -2.05
UBR4-217ENST00000497018 LPIN3Q9BQK8 851 aa2.27□□□□□ -2.05
UBR4-217ENST00000497018 MCMBPQ9BTE3 642 aa2.27□□□□□ -2.05
UBR4-217ENST00000497018 PHF20Q9BVI0 1012 aa2.27□□□□□ -2.05
UBR4-217ENST00000497018 USP26Q9BXU7 913 aa2.27□□□□□ -2.05
UBR4-217ENST00000497018 ZC3H12CQ9C0D7 883 aaKnown RBP2.27□□□□□ -2.05
UBR4-217ENST00000497018 BTBD1Q9H0C5 482 aa2.27□□□□□ -2.05
UBR4-217ENST00000497018 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP2.27□□□□□ -2.05
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms